>input_sequence_58845
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-------------------------------------------ATGGGTGAGCCACCGGTGAAGCTCATCAGCTCATTCG
GCAGTACGTTCAGCCACCGCACGGAGGTGGCCCTGAGGCTGAAGCGAGTGCCGTACGAGCTCATCGTCGAAGACCTTCAC
AACAAGAGCCAACTGTTGCTCACCCACAACCCCATCCACAAGAAGGTCCCCGTGCTCCTCCACGGCGACAGACCAGCGAT
CAGCGAGTCGCTCGTCATTATCGAGTACGTGGATGAGGCCTTCGCCGGGCGGCCCCTCCTCCCCACTGACCCCCACGCCC
GCACCACCGCCCGGTTCTGGGCTCACTTCATCGATCAAAAGGTATATGCAAAGCTGTAAACGAGCTCCATAGTTGTGTTG
AGAACTTGAGATCCGTGCGCAGAAC-TTTTTTTCTCAAGAAAAGAAATACATTTGAACTTTGCAGGCCTAGAGCACATGT
GTACTGCACTATGCAGAACTGTTT-------------------------------TTTTTATTATTATTGCTTTGAAGCA
TCAGAAATAACTTAAATGAACCCTAGTATTTTAGATATTTATGTTGCAAAAAGACCATGAAACCATTTCTGCACACTCTA
TTATTCATGTGTTCTTTGCCTGGAAAGTTTCAAGTTCAAATATTGTTTGGCTAGGAAGAAATAAAATAAATCAA----TT
CTACAGTGGTTGACCACGAACCTTGATGCAAATTTAGAAGGCCCGGATAGAAGGCATACCT--GCATAGTGGCTCAAAAA
ATCTGTATATAGTTGCTTGCAATTTTGCACAACCCACGGGCGATCTGAAAATATATGTTGATTAAATATGCAGTGCATGA
AGTCGTTGTGGGCGGCGCTCTGGATGGAACCTAGCGAGGCACAGAGACGGTCCATGGTAGAGGCAAAGGGGAGCCTCGCG
TTGCTAGAGGAGCACCTCGGGGAGAGGAGTTTCTTCGGTGGTGACTCCATCGGGCTCGTGGACATAGCAGCTAGTGTACT
GGCACACTGGCTTGGAGTCATGGAGAAGATCTCCGGAGTGACCGTGGTCACCAAAGAGGAGTTCCCGGCCCTTTGCCATT
GGTCTAGACGGTATGTAGGTGATGAGGATGTGAAGACATGCTTGCCGGAGAGGGGTGACCTCGTTGCCATGTTCTCTGGG
TGCAAGGAGATGTTTCGATCAATGGCAATGGCGATGCCACAGTAG-----------------------------------
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>chr3B_1_TraesCS3B01G539000
AGGAGCGCCAGCACCAAATGGACATGTGGTGGAGGAGCATCTTACTCTTGATTGAGAGGTCTTCGTCGAATTAAACCATG
TATGGGATGAGCCAAATGTTCACTTCTGTTTTTTAAGTTAAATTCTATACTTTCCTGAGTTTGAAATATTTCAGATTCCA
GTTGGAAATTCTGCAATCCCGGAATTTCCGGCAACATTCTGCTAATCCCAGACTAAGTTTATCTATTTAAACTAAATTTA
AGTGAACTGAATTTCCGTTAATCGTCCTTTGTTGTTCTCTACCACTGTACCACATATATATGCTGCAGAGAGTGAATTCC
AACGTGGCATGTTCAACTGGTTTAAATTTTATTAGAGACAGGACCGGATTTAATCACCACAGACCTTGTTTTAAACAGGG
TTTTACTTACGACTGGAGGAAGTATTGGTGGGGCAGAGGTAGCTTCGGTTACCGCTGATACTCATTACCGCCCAAAGTTC
TATACAAATTTGCTACAATTTGATTAATTATTTTTTGCATTCATACAAAC--TATATCGAAATGGTTTTGCAGCTATATA
ATTGTTGAACATGTGGGGGTGTGGTTAGGCTGTAGCTATAACCCTCGTCTGAACCAGATTTTGAGATCCAACATTTGGTT
CCTATCTTGACCGATTAATGTAACAAAAATGATTTCACCGCTTCCAAGGTTCGTCGATGAACGCTCACTTCAATCTAGAG
ATTCTTTCAGCCACGTACAAAAGAACTAGTATGTGGGGCCGAGGGCAAGATAAGTTTGTTTGTACTTCAAACATCAAGAT
GCAGCACTAATAAGTAATAGCTGAGTACTCTTTGTCCCATAGAGACAAAACAGACTCTATCGAAGGT-AAAAAACAATGT
CGATTTGTGCAGAGCTCAATCTTCCAGGAGAAGCATCAGTATCCTACTTAAATTTCTAGACAACACACAAGCACACACAC
CACAGAACCACGCCATTGAATAGCTCGCTTTGAAGTAAGAAGAATGGGTGAGCCACCGGTGAAGCTCATCAGCTCATTCG
GCAGTACGTTCAGCCACCGCACGGAGGTGGCCCTGAGGCTGAAGCGAGTGCCGTACGAGCTCATCGTCGAAGACCTTCAC
AACAAGAGCCAACTGTTGCTCACCCACAACCCCATCCACAAGAAGGTCCCCGTGCTCCTCCACGGCGACAGACCAGCGAT
CAGCGAGTCGCTCGTCATTATCGAGTACGTGGATGAGGCCTTCGCCGGGCGGCCCCTCCTCCCCACTGACCCCCACGCCC
GCACCACCGCCCGGTTCTGGGCTCACTTCATCGATCAAAAGGTATATGCAAAGCTGTAAACGAGCTCCATAGTTGTGTTG
AGAACTTGAGATCCGTGCGCAGAAC-TTTTTTTCTCAAGAAAAGAAATACATTTGAACTTTGCAGGCCTAGAGCACATGT
GTACTGCACTATGCAGAACTGTTT-------------------------------TTTTTATTATTATTGCTTTGAAGCA
TCAGAAATAACTTAAATGAACCCTAGTATTTTAGATATTTATGTTGCAAAAAGACCATGAAACCATTTCTGCACACTCTA
TTATTCATGTGTTCTTTGCCTGGAAAGTTTCAAGTTCAAATATTGTTTGGCTAGGAAGAAATAAAATAAATCAA----TT
CTACAGTGGTTGACCACGAACCTTGATGCAAATTTAGAAGGCCCGGATAGAAGGCATACCT--GCATAGTGGCTCAAAAA
ATCTGTATATAGTTGCTTGCAATTTTGCACAACCCACGGGCGATCTGAAAATATATGTTGATTAAATATGCAGTGCATGA
AGTCGTTGTGGGCGGCGCTCTGGATGGAACCTAGCGAGGCACAGAGACGGTCCATGGTAGAGGCAAAGGGGAGCCTCGCG
TTGCTAGAGGAGCACCTCGGGGAGAGGAGTTTCTTCGGTGGTGACTCCATCGGGCTCGTGGACATAGCAGCTAGTGTACT
GGCACACTGGCTTGGAGTCATGGAGAAGATCTCCGGAGTGACCGTGGTCACCAAAGAGGAGTTCCCGGCCCTTTGCCATT
GGTCTAGACGGTATGTAGGTGATGAGGATGTGAAGACATGCTTGCCGGAGAGGGGTGACCTCGTTGCCATGTTCTCTGGG
TGCAAGGAGATGTTTCGATCAATGGCAATGGCGATGCCACAGTAGTGAAGTGGTCCACTTTAATTCGTCTTTTGTGTTCT
TTTACCACTTTCCCGCGATCTTATCCTTTTTTTTCCTTGCATTGTAACACGCTTCTATGGTTTCTGCTAAACTGGGATTA
ATAAAGTGAGAGCTTTCTTCAGAATAATACTCTCTCCATCTCAATATACAAGGCTACTACACATTATTATATATGTCTAA
ATTTGACCATTAATTTTACCAACAAAAAGCGAGTTATATGCCACAAAAAGTATGCCATTGGATGCACATTTGAAAGAATT
TTCCGATGATATATGTTAGATGTCATATAA--------------------------------------------------
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-------------------------------------------------------------CTCATATTTTTTTGACAAA
AATAAGAAGTTCCAGTTTGATTTGAAAAACAAAGTGGTCTTGTATACAGAAATGGAGGGAGTATTGTATCACATCAGTAT
TATGACCTAGAAATAACCATTTCCAGCTGACTGCTGTCAGCGCGGTTAACCGAGAAATAACCATTTGTAGATTGATG-AT
CATAGCCGCTCTCACAAAC-TATCCATACTTCTATGTCAGCAAACAAAAAAAATCCATAGCTAACAAAAGAAAATTGAAA
TAAAGATATCCACGATCTACTACCTCCGTCCTGGTTTATTGTCCCCCTTAGTATTTTGTGCCAAATTTTGACTATGAATT
TCATTAACAAAATGTTAATGCATGTCACAAAAAATAATATCATTGAAAACTATATTTAAATATGAATCCAATGATACAAA
TTTTTATAACTTGCATTAAAATTTTATCAATTAAATCTATCGTCAAGTTTTGGCACAAACTATGAGAGGACCAATAAATC
ACGACGGACTTCGGATGCCATTGCTCGCTTGGAAACGTACACAATAGTATTACTACTTTAATTGATAGGCATGTCAAACA
AAGTCACCATCGTTTTGCTAGATTATATTATCTCTC---TTTGATCTGCCCACTGCATTCTAA-TATATTGTCTAGGTAA
ACCAAATCAGTTGTCTGACCTGCAGCTGCATCAATAACAGTG
>chr3D_1
AGGAGCGCCAGCACCAAATGGACATGTGGTGTAGGAGCATCTTACTCTTGATTGAGAGGTCTTCATCGAATTAAACCATG
TACGAGATGAGCCAAATGTTCTCTTCTGTTGTTAAAGTTAAATTCTGTACTTTCCTGAGTTTGAAATATTACAGATTTCA
GTTGGAAATTCCGCAATCCCGAAATTTCCGGCAACATTCTGCTAATCCCAGACTAAATTTATCTATTTAAAATAAATTTA
GGTGAACTGAATTTCCGTGCATCGTCCTTTGTTGTTCTCTACCACTGTACCACATATATATGCTGCAGAGAGTGAATTCC
AACGTGGCATGTTCAACTGATTTAATTTTTATCAGAGACTGGACCGGATTTAATCACCACAGACCTAGTTTTAAACAGGG
TTTTACTTACCACTAGAGGAAATATTGGTGGAACAGAGGTAGATTGGGTTACCGCTGATACTCTTTACCGCCCAAAATTC
TTTACAAATTTGCTACAATTTGATTAATTATATTTTTTATTGTTACAAACTATATATCGAAATGGTTTTGCAGCTATATA
ATTGTTGAACATGTGGGGGTGTGGTTAGGGTGTAGCTATAACCCTCGTTGGAACCAGATTTTCAGATCCAACATTTGGTT
CCTATCTTGACTGATTAATGTAACAAAAATGATTTCACCACTTCCGAGCTTCGTCGATGAACGCTCACTTCAATCTAGAG
ATTCTTTCAGCCACGTACAAAAGAACTAGTATGTGGGGCCGAGGGCAAGATAAGTTTGTTTGAACTTCAAACTTCAAGAT
GCAGGACAAATAAGTCATAGCTGAGTACTCTTGGTCCCATAGAGACAAGACAGACTCTATCGAAGCTAAAAAAACAATGT
CGAATTGTGCAGAGCTCAATCTTCCAGGAGAAGCATCAGTATCCTACTTAAATTTCCAGACAACACACAAGCACACACGC
CACAGCACCACACCATTGAAGAGCTTGCTTTCAAGCAAGAAGAATGGGTGAGTCGCCGGTGAAGCTCATCAGCTCGTTCG
GCAGTACGTTCAGCCACCGCGCGGAGGTGGCCCTGCGGCTGAAGCGGGTGCCGTACGAGCTCATTGTCGAAGACCTTCGC
AACAAGAGCCAACAGCTGCTCACTCACAACCCCATCCACAAGAAGGTCCCCGTGCTCCTCCACGGCGACAGACCACCGAT
CTGTGAGTCGCTCGTAATTATCGAGTACGTGGATGAGGCCTTCGCCGGGCGGCCACTCCTCCCCACCGACCCGCACGCCC
GCGCCACCGCCCGGTTCTGGGCTCACTTCATCGACGAAAAGGTATCTGCAAAGCTGTAAACGAGCTCCATAGTTGTGTTG
AGAACTTGAGATCCATGCCAAAACTTTTTTTCTGTCAACAAAAGGAATACATTTGAACTTTGCAGGCCTAGAGCACATGA
GTACTGCACTATGCAGAACTGTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGAAGCA
TCAAAAGTATCTTAAATGAACCCTAGTGTTTTAGATATTTATGTTACAAAAAAAACATG--ACCATTTCTGCACACGTTA
-TATTCATGTGTTGCCTGCCTGGAAAGTTTCAAGTTCAAATATTGTTTTGCTTGGAAGAAACAAAAAAATAGAAAAATTT
CTACAGTGATAGAGCAGGAACCTTGATGTAAATTTAGAAGGCCCGGATAGAAGGCATACCTCTGCATGGTGTCTCAAAAA
ATGGGTATATAATTGCGTGCAATGTTGCGGAACCCATGGGTGTTCTGAAACAATATGTTGATTAAATATGCAGTGCATGA
AGTCGTTGTGGGCGGCGCTATGGATGGAACCTAGCGAGGCACAGAGACGATCCTTGGTAGAGGCAAAGGGGAGCCTCGCG
TTGCTAGAGGAGCACCTCGGGGAGAGGAGTTTCTTCGGTGGTGACTCCATCGGGCTCGTGGACATAGCAGCTAGTGTACT
GGCACACTGGCTTGGAGTCATGGAGAAGATCTCCGAAGTGACCGTGGTCACGGACGAGGAGTTTCCGGCACTTTGCCATT
GGGCTAGACGGTATGTTAGTGATGAGGATGTGAAGACATGCTTGCCGGAGAGGGGTGAGCTCGTTGCCATGTTCTCTGGG
TGCAAGGAGATGTTTCGATCAATGGCAATGGCGCCGCCACAGCAGTGAAGTCGTCCACTTTAATTTGTCTTTTGT-TTTT
TCTACCACTTTCCCACGATCTTATCCTTTA-TTTCCTTGCATTGTAACACGCTTTTATGGTTTCTGCTAAATTGGGATTA
ATAAAGTGAGAGCTTTCTTCAGAATAATACTCCCTCCATCCCAATATACAAGGCTACTACACACTTT----TATGTCTAA
ATTTGACCATTAATTTTATCAACAAAAAGCGAGTTATATGCAACAAAAAGTATGTCATTGGATGCACATTTGAAAGAATT
TTCCGATGATATATGTTAGATGTCATATAACCAGTGAAAAAGATAGCGCACTATAGCGTCGCTAATAGCATGTTATAGCG
TTCTGAGCAATGTCTCACTAAATTAATCGATGTACAATGTTCCGCTAATAGCATGTTATAGTGCGATATAGCACGCTAAT
AGCATATCTTAAGAGACACATTATTTTGTCATAGCATGCTATTTTTTTTCATTGCATATAACTCATATTTTTTTGACCAA
AATAAGAAGTTCCAGTTTGATACGAAAAACAAAGTGGCCTTGTATACAGAAATGGAGGGCGTATTGTATCACATCAGTAT
TATAACCTAGAAATAACCATTTCCAGCTGACTGCTGTTAC--CGGTTAACCGAGAAATAACCATTCATAGATCGATGAAT
CATAGCCGCTCTTACAAAATTATTCATACTTCTATGTCAGCAAAT--AAAAAATCCATAGCTAACAAGAAAACG----AA
ATAAAAAATCCACGATCTACTTTCTATGTCAGCAACAGCATGCCGATCAAGAAACTTT----------------------
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------GACTTCGGATGCCATTGCTCGCTTGGAAACGTACACAATAGTACTACAACATTAATTGATACGCATGTCAAACA
AAGTCACCATCGTTTTGCTACATTATATTATCTCCTCCGTTTGATCTGCCCACTGCATTCTAAATATATTGTCTAGGTAA
ACCAAATCGGTTGTCTGACCTGCAGCTGCATCAATAACAGTG
>SNPs
-------------------------------S--------------------------------S---------------
--S-S----------------S--------S--S------------S-----------------------S------S--
-----------S---------S----------------------------------S--------------S--------
S-----------------SS------------------------------------------------------------
-------------------S-----S------S------S--------------------------S-------------
----------S---S------S---------SS---------S--S-----------------S------------S---
-S-----------------------------S----SS---SS-------------------------------------
-----------------------------S------------------SS------------S-----------------
-----------S---------------------------S-----S--S-------------------------------
--------------------------------------------------------------S---------S-------
----S--S-------S----------------S---------------S----------------S--------------
---S----------------------------------------------------S---------------------S-
-----S-----S--------S----S-----S---S----------------S-S--------------------S----
--------------------S--------------S----------S-----------------S-------------S-
-------------S-S-------S---------------------------------------------------S----
-S-S-----------S--------------------------------------S-----------S-----S-------
--S-------------------------------SS---------S----------------------------------
--------------S---SS-S-SS------S-S----S-----S----------------------------------S
---------------------------------------------------------S-----------SS---------
---S--S--S-----------------S-----------------S------S-S----SS---------------SS--
S------------SSS--------------------------------S---S--------S----S--SSS--------
--------S-S--S--S-----------S--------------------------------------S---S--------
--SS-------S----S------S----SS------S---S-S-------SS----------------------------
-------------------S-----------------------------S---S--------------------------
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-----------------------------------S---------------SS-S--------S-----S----------
--S-------------SS----------------------------------------S---------------------
---------------------------------SS-------S--------S-------------S---------S--S-
-S------------S--------------SS-----------------------S----------------S--------
--------------------------------S-------S----------------------S-S-SSSS---------
------------------S----------------------S------------S-------------------------
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-----------------------------------------------------------------------------S--
---------------------SS--------------S---------------------S--------------------
---S---------------------------------S-SSS-----------------------SS-----S-------
------------S-----S----S--------------------SSS--------------------S-S--SSSSSS--
SS--S-S--------------SS--SS---SSSSSSSSSSSS--SSSSS--S-SS--SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-------------------------------------------S---S--S----------S------------
--------------------S-------------SS--------------------------------------------
--------S---------------------------------
>forward_966
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------------------------------------------------------------------ACAAGCACACACAC
CACAGA--------------------------------------------------------------------------
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>reverse_1860
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-------------------CTGGATGGAACCTAGCGAGG-----------------------------------------
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>forward_1105
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---------------------------------------------GAGTGCCGTACGAGCTCATC---------------
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>reverse_3198
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-----------------------------------------------------------------------------ATC
ACGACGGACTTCGGATG---------------------------------------------------------------
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