>input_sequence_58802
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------------ATGGACGGCCTCCACACGGAGCTGGCGCTGGGGCTGATCGGGTGCGGCCATGGCGACCTCCAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGTGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAAGGGCAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACACATATGTGAGTACTCCTATCCTACCTAGTGAGGC-----TTCCAGTGCCGCCGTCTTTTGTCTT
CTGGT-GTCCTAGCAAGGA---------GTGGTCTGTAAATGGTACTTGCTTGTACGAAGGGTACTCTAAGCTTGCACGT
GCACTGTACA----CTTGCTTGAAGAAATGTCT--------GCTTGATTTGCTTATTAGATGGAATTCTTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCGTTCCTGCGCGGCCAGACGCACCTGCTGCCGCGCATC
GTGCGCCGC---AA---GAAGCGCGGCGAGGCCGGTGCTGGCGCCTCGTGCTCGTCTGCAGTCGGCGGCGGCGAGCAGCA
CCAGCACGTGGTGGCCAATATGGGAGACCAAGTGGAGGAGGAAGAGGATGAGGAGGGAAGGGAGGCGCTGCTCGAGGAGG
TTCAGAGGCTGCGGCAGGAGCAGACGGCCATCGGGGAGCAGCTGGCGAAGATGAGCCGGCGACTGCAGGCGACAGAGCGG
CGGCCTGACCGGCTCATGTCCTTCCTCTCCAAGCTCGCCGAGGATCCCAACGCCACCTCCCTCCACCTTCTCGAACAAGC
AGCCGAGAAGAAGCGCCAGCGCATGCAGTGCCCTTCCCGTGATTTTACTTCCTTTCCCGTCGCACTTCCTCTTCATCCCG
CGCCTTCACCGCCGCCGCCGCCGCTATTGGCGCTCGGCGACCCGACCATGGGCGGGGTCAGAGTCTGGCAATGGGCGGAG
CCGAT---GCCACTGGCGCTCACAACCTTCGAGCAGCCCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CG------------G------------CCGGAGCGGCAGCAGCATGGGCATAACTGACGGTGGGACCGCGGTGGAGACCC
CCTTCCCGTTCTGCCTACTGGGCCAGTGTTTCTTCTAA------------------------------------------
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>chr3A_1_TraesCS3A01G229000
CTTTAATTGATCAATCCCGTAAAGAGCAGGGGGGTGGGCCCGGCCCATATTTTGTTACGAGCAAGCATAGTCGTCCATAT
CTGCCGCGTTATCATTTGATACTGTCTTTTTTTTGCGAGTATCATTTGA--TATTGTCCACCCGGGTTGCTTTGATTGGT
CGAGGATTAATATATACGATGGATTAGCTAATTAATCCGCCGTACGTACGTGCAGCATTGACACGTAAGTGAGCATCTTG
CGAGGACCAAACACCG------TTTCACCCCTTTCCGGTGGGGTTTCGCCGGCCGGTGGCACGCTCGCACGGACTAAACC
TAGTCCATGAATGAGCCCAACC--TTACATTTTTCTAGTACAAGCTGGTGTTTGTACTACCTTCTCAGTCAGTGTACAGT
CGATCGAAGCGACCGATCACAACACCAGCACAGTGCGAGAGGAGCAAGTGGACGGACAACCATTAAGCTGCTAGCCCCTA
CTCCACGGCCAGATCGAGAGGAGCAAGCTTGAGAGAGACCACACCGGATGG-----------------------------
---------ATGATCGAGGCAGTTGGGTTTTGATGCGATC-------------TCCTGCTCATTGTCCGCACTGTTGGAG
CACGCTCCGGTCCAAAAGGCGGCACGGTTTTAATCACATA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TATCACCGGAAATCTCAGGCGATGGCGACGCCAGGAA
GGCTGGGGATCGATCGACATGCTGCTAGTCCGTGTGAAGGA--------TCGACACACGACACTTGTCCCGTTTTCCGAG
CGCCAGAGACGTCTATATATATAGATTAACCCCGAACAGGTAAGCTCATCACATGGGTTATTTGTTTAGCCATGTCCTCC
TGTCACGCACGCTGCCCATAATTAGTAACCATAGCCTAATTGGGCGGCGCCCGGCCCCTCTCTGCAAGCAACCACACCTG
CCTGCCTGCCTGC---CT-------------------TTTGAGGGACTTTGACGTGTGCGGGTGAGTT-AGAGTAGAGGG
AGCGAACTCCCAGTGCCTGAGGCAAGTACGCAGGA-------------------------------GGTACATAGATAGG
AG------CAGGATGGACGGCCTCCACACGGAGCTGGCGCTGGGGCTGATCGGGTGCGGCCATGGCGACCTCCAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGTGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAAGGGCAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACACATATGTGAGTACTCCTATCCTACCTAGTGAGGC-----TTCCAGTGCCGCCGTCTTTTGTCTT
CTGGT-GTCCTAGCAAGGA---------GTGGTCTGTAAATGGTACTTGCTTGTACGAAGGGTACTCTAAGCTTGCACGT
GCACTGTACA----CTTGCTTGAAGAAATGTCT--------GCTTGATTTGCTTATTAGATGGAATTCTTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCGTTCCTGCGCGGCCAGACGCACCTGCTGCCGCGCATC
GTGCGCCGC---AA---GAAGCGCGGCGAGGCCGGTGCTGGCGCCTCGTGCTCGTCTGCAGTCGGCGGCGGCGAGCAGCA
CCAGCACGTGGTGGCCAATATGGGAGACCAAGTGGAGGAGGAAGAGGATGAGGAGGGAAGGGAGGCGCTGCTCGAGGAGG
TTCAGAGGCTGCGGCAGGAGCAGACGGCCATCGGGGAGCAGCTGGCGAAGATGAGCCGGCGACTGCAGGCGACAGAGCGG
CGGCCTGACCGGCTCATGTCCTTCCTCTCCAAGCTCGCCGAGGATCCCAACGCCACCTCCCTCCACCTTCTCGAACAAGC
AGCCGAGAAGAAGCGCCAGCGCATGCAGTGCCCTTCCCGTGATTTTACTTCCTTTCCCGTCGCACTTCCTCTTCATCCCG
CGCCTTCACCGCCGCCGCCGCCGCTATTGGCGCTCGGCGACCCGACCATGGGCGGGGTCAGAGTCTGGCAATGGGCGGAG
CCGAT---GCCACTGGCGCTCACAACCTTCGAGCAGCCCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CG------------G------------CCGGAGCGGCAGCAGCATGGGCATAACTGACGGTGGGACCGCGGTGGAGACCC
CCTTCCCGTTCTGCCTACTGGGCCAGTGTTTCTTCTAAACACGGCGCGCGCATCGTGCATGCACATGCAC---TACCTTC
TTCTACTTACTAATTTAGCAA------TTAGCAATCATTTGTACACACCTACAAAAAACAATGTTATATTAGCTCTGCTA
TACTCATTCAGTAATACCAGCATCGGTACGTGCTCTGAATATTCTTAGGCC---ACTAGGCGCTGTCGACCGGCC-AAAA
TTCGGTCAGTCGCCGCGCGGCCGTTAGATTAGGCCAGCCCATGCTCTTAGCCGGACTTGCATACCGCGGACGCGCGTCCG
AGCACACCCGCCGACAATGATCGGGCACTTCATGTATTCGCGCCTCCACGCCGTTGTATCTCACATTCCCTTTATTATAC
TCCCTCCATTCCTTGATATAAGGTGTCTAGATTTTTAAGAAAAAAACCAAAATATAAGATGTATTGCGTTGCAACACTCG
TTTGGATATTTTTTTAGAATTTGATTACATTTCCTTATATCGGGCAAGCTCCTCTATTTTCTCATGTCAATTACTCAGGT
GTAATGTCACCCAAAACTTGTGAAATTTTTCCTCCATGTGTGTTCTTTAATTTCCATGCCAAAAACTATACATCCTATAT
TTAGGAACAGAGGGAGTATCATAGTTTTAAATAGCCGGCTATAGCTTCGCTATAGCCCGCTATAACCTTTTTAGCAGGGT
GCTGCTAAATGGTCGCCTTCACAAATAGCCCGTTATAACCCGCTTTAGCCCACTATAGCTGATTTGGAGGTCCGTCGTTA
TTTCCCATAGCCCGCTATTTAAAACATTGTTTACATTCATACTCCCTCCGTTCCAAAATATAGCGCGTCCTCGGTTTCCG
TGCTTCAACTTTGACCATTAGTTTAATCAACAAGACCGACTGCGGCGGGCGAAAAAATTATACCAATGAATTCGTATTCA
AAAAAAGTTTTTAATTATATAATTTTTGATCCCGCCGCAGTCGGTCTCGTGGTTTAAATTTATGGTCAAAGTTGAACCTC
GAAAAGCGTGG
>chr3D_120
--------------------------------------------------------------------------------
---------------------------------------TATCATTTGA--TACTGTCCACTCGGGTTGCTTTGATTGGC
CGAGGATTAATATATACGATGGATTAGCTAATTAATCCGCCAAACGTACGTGCACCGGTGACACGTAAGGGAGCATCTTG
CCAGGTCCAAACGCCGCGCGCCTTTCACCCCTTTCCGGTGGGGTTTCGCCGGCCGGTGGCACGCTCGCACGGACTAAATC
GGGTCCATGAATGAGCCCCGACCTTTACATTTTTCTAGTACAAGCTAGCGTTTGTACTACCTTCTCAGTCAGTGTACAGT
CGATCGAGGCGAGCGATCACATTACCAGCACAGTGCGAGAGGAGCAAGTGGACGGACAACCATTAAGCTGCTAGCCCCTA
CTCCGCGGCCAGATCCAGAGGAGCAAGCTTGAGAGAGACCACACCGGATGATCGAGGCAGTTCCTTTTC-----------
--AAAAAACATGATCGAGGCAGTTGGGTTTTGATGCGATCGGGACGGCGCGTCTCCTGCTCATTGTCCGCACTGTTGGAG
CACGCTCCGGTCCAAAAGGCGGCACGGTTTTAATCACATA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TATCACCGGAAATCTCACGCGATGGCGACGCCAGGAA
GGCTGGGGATCGATCGACATGCTGCTAGTCTGTGTGAAGGA--------TCGACAC-------TTGTCCCGTTCTCCGAG
CGTCAGAGACGCCTATATATATAGATTAACCCGGAACAGGTAAGCTCATCACATGGGTTATTAGTTTAGCCATGTCCTCC
TGTCACGCACGCTGCCCATAACTAGTAACCCTAGCCTAATTGGGCGGCGCCCGGCCCCTCTCTGCAAGCAACCACACCTG
CCTGCCTGCCTGC---CT-------------------TTTGAGGGATTTTGACGTCCGCGAGTGAGTT-GGAGTAGAGGG
AGCGAACT-CAAGTGCCAGAGGCAAGTACGCAGGA-------------------------------GGTACATAGATAGG
AA-----T-AGGATGGACGGCCTCCACACGGAGCTGGCGCTGGGGCTGATCGGGTGCGGCCATGGCGACCTCCAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGTGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAAGGGCAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACACATATGTGAGTATTCCTATCCTACCTAGTGAGGC-----TTCCAGTGCCGCCGTCTTTCGTCTT
CTGGT-GTCCTAGTAAGGA-----------------------GTACTTGCTTGTACGAAGGGTACTCTAAGCTTGCACGT
GCACTGTACA----CTTGCTTGAAGAAATGTCT--------GCTTGATTTGCTTATTAGATGGAATCCTTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCGTTCCTCCGCGGGCAGACGCACCTGCTGCCGCGCATC
GTGCGCCGC---AA---GAAGCGCGGCGAGGCCGGTGTTGGCGCCTCCTGCTCGTCTGTTGTCGGCGGTGGTGAGCAGCA
TCAGCACGTGGTGGCCAACATGGGAGACGAAGTGGAGGAGGAAGAGGATGAGGAGGGAAGGGAGGCGCTGCTCGAGGAGG
TTCAGAGGCTGCGGCAGGAGCAGACGGCCATCGGGGAGCAGCTGGCGAAGATGAGCCGGCGACTGCAGGCGACAGAGCGG
CGGCCTGACCGGCTCATGTCCTTCCTCTCCAAGCTCGCCGAGGATCCCAACGCCACCTCCCTCCACCTTCTAGAACAAGC
AGTCGAGAAGAAGCGCCAGCGCATGCAGTGCCCTTCCCGTGATTTTACTTCCTTTCCCATCGCACTTCCTCTTCAGCCCG
CACCTTCACCGCCGCCGCCACCGCTATTGGCGCTCGGCGACGCGGCCATGGGCGGGGTCAGAGTCTGGCAATGGGCGGAG
CCGAT---GCCACTGACGGT------------GCGGCCCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CG------------G------------CCGGAGCGGCAGCGGCATGGGCATAACTGACGGTGGGACCGCGGTGGAGACCC
CCTTCCCGTTCTGCCTACTGGGCCAGTGTTTCTTCTAAACACGGCGCGCGCATCGTGCAGGCACATGCGC---TACCTTC
TTCTACTTACTAATTTAGCAA------TTAGCAATCATTTGTACACACCTACAAAAAACAATGTTATATTAGCTCTGCTA
TACTCATTCAGTA---------------CGTGCTCTGATTATTC------------------------------------
---GGTCAGTCGCGGCGCGGCCGTTAGATTAGGCCAGCCCATGCTCTT--------------------------------
--------------------------------------------------------------------------------
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-----------
>chr3B_120
--------------------------------------------------------------------------------
---------------------------------------TATCATTTGAGATACTGTCCACTCGGGTTGCTTTGATTGGC
CGAGGATTAATA-ATACGATGGATTAGCTAATTAATCCGCCAAACGTACGTGCACCGGTGACACGTAAGTGAGCATCTTG
CAAGGTCCAAACGCCGCGCGCCTTTCACCCCTTTCCGGTGGGGTTTCGCCGGCCGGTGGCACGCTCGCACGGACTAAATC
GGGTCCATGAATGAGCCCCGACCTTTACATTTTTCTAGGACAAGCTAGTATTTGTACTACCGTCTCAGTCAGTGTACAGT
CGATCGAGGCGACCGATCACATTACCAGCACAGTGCGAGAGGAGCAAGTGGAC----AACCATTAAGCTGCTAGCCCCTA
CTCCGCGGCCAGATCGAGAGGAGCAAGCTTGAGAGAGACCACACGGGATGATCGAGGCAGTTCCTTTTCGTCGAAAGGAA
AAAAAAAACATGATCAAGGCAGTTGGGCTTTGATGCCATCGGGACGGCGCGTCTCCTGCTCATTGTCCGCACTGTTGGAG
CACGCTCTAGTCCAAAAGGCGGCACGGTTTTAATCACATATACTCCCTCCTTTCTGGTTTATAGGGTTTATCTTAAAATT
TTAGTTTTCCATTTTATAAGGCTTAATTTGGCTGTTCCCATCACATGTTCAGATTTCAAGGTGCATTAAATCATTGCATG
CAAGTATTAAGAGAAAATTGACCAATGCATGTATTTTATGCATGCATGTATTGCAATTAGTGCATTGATAAACATAATTT
TTTGAGGAAAACTAGAGTATTAATTAGGTGCTTTTGTAAACTACAAAAAATATTCCATCACTCACCATCTACCTTGGTTG
GTGAGATTTTTGAATTAAGCCCTATAAACCAGAAAGGAGGGAGTATCACCGGAAATCTCATGCGATGGCGACGCCAAGAA
GGCTGGGGATCGATCGACATGCTGCTAGTCTGTGTGAAGGATCAGCAACTCGACAC-------TTGTCCCGTTCTCCGAG
CGCCAGAGACGCCTATATATATAGATTAACCCTGAACAGGTAAGCTCATCACATGTGTTATTAGTTTAGCCATGTCCTCC
TGTCACGCACGCTGCCCATAATTAGTAACCCTAGCCTAATTGGGCGGCGCCCGGCCCCTCTCTGCAAGCAACCACACCTG
CCTGCCTGCCTGC---CTGCCTGCCTGCCTTTCGAGTTTTGAGGGATTTTGACGTCTGCGAGTGGGTT-AGAGTAGAGG-
---GAACCCCCAGTCCCTGAGGCAAGTACGCAGGA-------------------------------GGTACATAGATAGG
AA-----TCAGGATGGACGGCCTCCACACGGAGCTGGCGCTGGGGCTGATCGGGTGCGGCCACGGCGACCTCCAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGTGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAAGGGCAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACACATATGTGAGTACTCCTATCCTACCTAGTGAGGC-----TTCCGGTGCCGCCGTCTTCTGTCTT
CTGGGGGTCCTAGTAAGCA---------GTGGTTTGTAAATGGTACTTGCTTGTACGAAGGGTACTCTAAGCTTGCACGT
GC-----------------TTGAAGAAATGTCT--------GCTTGATTTGCTTATTAGATGGAATTGTTGTGTAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCGTTCCTCCGCGGGCAGACGCACCTGCTGCCGCGCATC
GTGCGCCGC---AA---GAAGCGTGGCGAGGCCGGTGTTGGCGCCTCCTGCTCGTCTGCAGTCGGCGGCGGCGAGCAGCA
ACAGCACGTGGTGGCCAATATGGGAGACCAAGGGGAGGAGGAAGAGGATGAGGAGGGGAGGGAGGCGCTGCTCGACGAGG
TTCAGAGGCTGCGGCAGGAGCAGACGGCCATCGGGGAGCAGCTGGCGCAGATGAGCCGGCGACTGCAGGCGACGGAGCGG
CGGCCTGACCGGCTCATGTCCTTCCTCTCCAGGCTCGCCGAGGATCCCAACGCCACCTCCCTCCACCTTCTCGAACAAGC
AGCCGAGAAGAAGCGCCAGCGCATGCAGTGCCCTTCCCGTGATTTTACTTCCTTTCCCATCGCACTTCCTCTTCAGCCCG
CACCTTCACCGCCGCCGCCACCGCTATTGGCGCTCGGCGACGCGGCCATGGGCGGGGTCAGAGTCTGGCAATGGGCGGAG
CCGAT---GCCACTGAAACTCACAACCGTCGAGCAGCCCTCCGGGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CG------------G------------CCGGAGCGGCAGCGGCATGGGCATAACTGACGGTGGGACCGCGGTGGAGACCC
CCTTCCCGTTCTGCCTACTGGGCCAGTGTTTCTTCTAAACACGGCGCGCGCATCGTGCAGGCACATGCGC---TACCTTC
TTCTACTTACTAATTTAGCAA------TTAGCAATCATTTGTACACACCTACAAAAAACAATGCTATATTAGCTCTGCTA
TACTCATTCAGTAATACCAGCATCGGTACGTGCTCTGATTATTCTTAGGCCACTACTAGACGCCGTCGACCGGCCCAAAA
TTCGGTCAGTCGCCGCGCGGCCGTTAGATTAGGCCAGTTCATGCT-----------------------------------
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>chr3A_846
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-------------------------------------AATTGGCCAGCGCCCGGCCCCTCTCTGCGAGCAATCCA-----
CCTGTCTGCCTGC---CT-------------------TTTGAGGGATTTTGACGTCCGGGAGTGAGAT-ATAGTAGAGG-
---GAACTCCCAGTGTCTGAGATCCGCCGGGCGGTCCTGGTGGAGAGAAGTAGCTAGGCAGC---TGGTACATAGGATAT
AGCTAGCT-AGGATGGACGGCCTCCACAAGGAGCTCGCGCTGGGGCTGAT------------CGGCGAGCTCCAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGAGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAGGGACAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCATGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
ATCCGCCAGCTCAACTCATACGTGAGTAT-----------CCTTTCTC--------------------------------
----------------------------------------------------------------------------ACGT
GCACTGTACATACACTTGCTTGAAAGAAATATCTGCTAGCAGCTTAATTTGCTAC---GGTGAGGTTGTTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAATCGTTCCTGCGCGGCCAGATGTACCTTCTGTCGCGCATC
GTGCGCCACAAGAA---GAAGCGCGGCGAGACC------------TCTTGCTCGTCTCTAGTCGGCGGCGGCGAG-----
-CAGCACGTGATGGCCAATATACGATAGGAAGTGGAGGAGGAAGAGGACGACGAGGGGAGGGAGGCGCTGCTCGAGGAGG
TTCGGAGACTGCGGCATGAGCAGACGGCTATCGGGGAGCAGCTGGCGCAGATGGCCCGGCGACTACAGGCGACGGAGCGG
CGGAGTGACCGGCTCATGCCCTTAATTGCCCGGCTCGACGAGGATCCCAGGGCCACCTCCCTCCACCTTCTCCAACAGGC
GGCCGAGAAGAAGCTCCAGCGCATGCACTTGCCTTCCCGTGATTTTGCTTCCTTTCCCATTGCACCCCCGCTTCAC----
--------TCGGCGCCTTCACCGCTCTTGGCTCTCGGCGACACGGCCATGAGCGGAGCTAGAGTCTGGCAGTGGGCAGAG
CCGATGTCGCCACTGAAACTCACAACCTTCGAGCAGCCCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGC
CG------------G------------C------GGCAGCGGCATGGGACTAACTGACAGTGGGACCGCGGTGGAGACCC
CCTTCCCGTTCTGCCTACTTGGTCAGTGTTTCTTCTAAACATGGCGCGTA----GTGCATGCACATGCAATAGTACCTTC
TTCTGCTTAGTAATTTAGCAA------T----------------------------------------------------
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-----------
>chr3D_846
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-------------------------------------AATTGGCCAGCGCCCGGCCCCTCTCTGCGAGCAATCCA-----
CCTGTCTGCCTGCCTTCT-------------------TTTGAGGGATTTTGACGTCCGGAGGTGAGTT-AGAGTAGAGG-
---GAGCTCCCAGTGTCTGAGATCCGCCGCGCGGTCCTGGTGGAGAGAACTAGCTAGGCAGCAGGTAGTACATAGGATAT
AGC----T-AGGATGGACGGCCTCCACACGGAGCTCGCGCTGGGGCTGAC------------CGGCGAGCTCCAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGCTGGTGAGCGACCCCAGGACGGACGCGCTCGTCAGGTGGGGGAGGGACAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACTCTTACGTGAGTAC-----------CCTTTCTCC-------------------------------
---------------------------------------------------------------------AGCTTGCACGT
GCACTGTACATACACTTGCTTGAAAGAAATATCTGCTAGTAGCTTAATTTGCTAC---GGTGAGGTTGTTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCATTCCTGCGCGGCCAGACGCATCTTCTGCCGCGCATC
GTGCGCCGC---AA---GAAGCGTGGCGAGGCC------------TCTTGCTCGGCTCTAGTCGGCAGCGGCGAG-----
-CAGCACGTGATGGCCAATATAGGAGCGGAAGTGGAGGAGGAAGAGGACGACGAGGGGAGGGAGGCGCTGCTCGAGGAGG
TTCGGAGGCTGCGGCAGGAGCAGACGGCTATCGGGGAGCAGCTGGCGCAGATGGCCAGGCGACTGCAGGCCACGGAGCGG
CGGAGTGACCGGCTCATGCCCTTACTTGCCCGGCTCGACGAGGATCCCAGGGCCACCTCCCTCCACCTTCTCCAACAGGC
GGCCGAGAAGAAGCGCCAGCACACGCAGTTGCGTTCCCGTGATTTTGCTTCCTCTCGCATTGCACCACCGCTTCAA----
--------CCGGCACCTTCACCGCTATTGGCTCCCGGGGACGTGGCCATGGGCGGAGCTATAGTCTGGCAATGGGTGGAG
CCGATGTCGC------------CAACCTTCGAGCAGACCTCCCTGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CC------------G------------C------GGCAGCGGCATGGGCCTAACTGACAGTGGGACCGCGGTGGAGACCC
CCTTCCCGTTCTGCCTACTTGGTCAGTGTTTCTTCTAAACACGGCGCGTA----GTGCATGCACATGCAATAGTACCTTC
TTCTACTTAGTAATTTAGCAA------T----------------------------------------------------
--------------------------------------------------------------------------------
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-----------
>chr3B_846
--------------------------------------------------------------------------------
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-------------------------------------AATTGGCCAGCGCCCGGCCCCTCTCTGCGAGCAATCCA-----
CCTGTCTGCCTGC---CT-------------------TTTGAGGGATTTTGACGTCCGGGAGTGAGATAAGAGTAGAGG-
---GAACTCCCAGTGTCTGAGGTCCGCCGCGCGGTCGTGGTGGGGAGAAGTGG-------GCAGCTGGTACATAGGATAT
AGC----T-AGGATGGACGGCCTCCACACGGAGCTCGCGCTGGGGCTGAT------------CGGCGAGCTCGAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGTGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAGGGACAACAACA
GCTTCCTCGTCACCGACGTCGCCGGGTTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTGTCCAGCTTC
GTCCGCCAGCTCAACTCATACGTGAGTAC-----------CCTTCCTCC-------------------------------
---------------------------------------------------------------------AGCTTGCACGT
GCACTGTGCATACACTTGCTTGAAAGAACTGTCTGCTAGCT--TTAATTTGCTAC---GATGAGATCGTTGTGCAGGGTT
TCCGGAAGGTACACCCGGACCGATGGGAGTTCGCGCACGAGTCATTCCTGCGCGGTCAGACGCACCTTCTGCCGCGCATC
GTGCGCCGC---AA---GAAGCGCGGCGAGGCC------------TCTTCCTCGGCTCTAGTCGGCAGCGGCGAG-----
-CAGTACGTGGTGGCCAATATCGGGGAGGAAGTGGAGGAGGAAGAGGACGACGAGGGGAGGGAGGCCCTGCTCGAGGAGG
TTCGGAGGCTGCGGCAGGAGCAGACGGCTGTCGGGGAGCAGCTGGCGCAGATGGCTCGGCGACTGCAGGCGACGGAGCGG
CGGAGTGACCGGCTCATGCCCTTACTTGCCCGGCTCGACGAGGATCCCAGGGCCACCTCCCTCCACCTTCTCCAACAGGC
GGCCGAGAAGAAGCGCCAGCACACGCAGTTGCATTCCCGTGATTTTGCTTCCTTTCCCATTGCACCCCCGCTTCAC----
--------CCGGCGCCTTCGCCGCTATT---------------GGCCATGGGCGGAGCCAGAGTCGGGCAATGGGCCGAG
CCGATG---CCACTGAAACTCACAACCTTCAAGCAGACCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CG------------G------------C------GGCAGCGGCATGGGCCTAACTGACAGTGGGACCGCAGAGGAGACCC
CCTTCCCGTTCTGCCTACTTGGTCAGTGTTTCTTCTAAACACGGCGCGTA----GTGCATGCACATGCAATAGTACCTTC
TTCTGCTTAGTAATTTTGCAA------T----------------------------------------------------
--------------------------------------------------------------------------------
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-----------
>chr3A_949
--------------------------------------------------------------------------------
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---GAGCTCCCAGTGTCTGAGGTCCGCCGCCCGGT-------------------------------AGTACATAGGATAT
AG-----T-AGGATGGACGGCCTTCACACGGAGCTCGCGCTGGGGCTGAT------------CGGCGAGCTCGACACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGAGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAGGGACAGCAACA
GCTTCGTCGTCACCGACGTCGCCGGCTTCTCGGAGCTCCTCCTCCCATGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACTCTTACGTGAGTAC-----------CTACTGAGGCTTCCTTC------------------GGCCT
TTCTT-GTCCTAGTAATACTAGTGATCCGTAGTCTGTTAATGGTACTCGA---------------TCTAGGCTTGCACGT
GCACCGTACT----CTTGC-----GAAATGTCT--------GCTTAATTTGCTAT---GATGAGATTGCTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCATTCCTGCGCGGCCAGACGCACCTTCTGCCGCTCATC
GTGCGCCGC---AAGAAGAAGCGCGGCGAGACC------------TCTTGCTCGTCTCTAGTCGGCGGCGGCGAG-----
-CAGCACGTGATGGCCAATATAGGAGAGGAAGTGGAGGAGGAAGAGGACGACGAGGGGAGGGAGGCGCTGCTCGAGGAGG
TTCGGAGGCTGCGGCAGGAGCAGACAGCTATCGGGGAGCAGCTGGCGCAGATGGCCCGGCGACTGCAGGCGACGGAGCGG
CGGAGTGACCGGCTCATGCCCTTCCTCGCCAGGCTCGACGAGGATCCCAACGCCACCTCCCTCCACCTTCTCCAACAGGC
AGCCGAGAAGAAGCTCCAGCGCATGCAGTTGCCTTCCCGTGATTTTGCTTCCTTTCCCATTGCACCCCCGCTTCAC----
--------CCGGCGCCTTCACCGCTCTTGGCTCTCGGCGACGCGGCCATGGACGGAGCCAGAGTCGGGCAGTGGGCGGAG
CCGAT---GCCACTGAAACTCCCAGCCTTCGAGGAGCCCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CGGCGGCAGGGACAG------------C------GGCAGCGGCATGGGCATAACTGACAGTGGGACCGCCGTGGAGATCC
CCTTCCCGTTCTGCCTACTTGGCCAGTGTTTCTTCTAAACATGGCGCATA----GTGCATGCACATGCACTAG---CTTC
TTGTACTTAGTGTACT--CTTACTAATTTAGCAATCATTTGTACACAACTA-----------------------------
--------------------------------------------------------------------------------
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-----------
>chr3A_949
--------------------------------------------------------------------------------
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---GAGCTCCCAGTGTCTGAGGTCCGCCGCCCGGT-------------------------------AGTACATAGGATAT
AG-----T-AGGATGGACGGCCTTCACACGGAGCTCGCGCTGGGGCTGAT------------CGGCGAGCTCGACACGGC
GCCGTTCGTGGCCAAGACGTACCAGATGGTGAGCGACCCTAGGACGGACGCGCTCGTCAGGTGGGGGAGGGACAGCAACA
GCTTCGTCGTCACCGACGTCGCCGGCTTCTCGGAGCTCCTCCTCCCATGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACTCTTACGTGAGTAC-----------CTACTGAGGCTTCCTTC------------------GGCCT
TTCTT-GTCCTAGTAATACTAGTGATCCGTAGTCTGTTAATGGTACTCGA---------------TCTAGGCTTGCACGT
GCACCGTACT----CTTGC-----GAAATGTCT--------GCTTAATTTGCTAT---GATGAGATTGCTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCATTCCTGCGCGGCCAGACGCACCTTCTGCCGCTCATC
GTGCGCCGC---AAGAAGAAGCGCGGCGAGACC------------TCTTGCTCGTCTCTAGTCGGCGGCGGCGAG-----
-CAGCACGTGATGGCCAATATAGGAGAGGAAGTGGAGGAGGAAGAGGACGACGAGGGGAGGGAGGCGCTGCTCGAGGAGG
TTCGGAGGCTGCGGCAGGAGCAGACAGCTATCGGGGAGCAGCTGGCGCAGATGGCCCGGCGACTGCAGGCGACGGAGCGG
CGGAGTGACCGGCTCATGCCCTTCCTCGCCAGGCTCGACGAGGATCCCAACGCCACCTCCCTCCACCTTCTCCAACAGGC
AGCCGAGAAGAAGCTCCAGCGCATGCAGTTGCCTTCCCGTGATTTTGCTTCCTTTCCCATTGCACCCCCGCTTCAC----
--------CCGGCGCCTTCACCGCTCTTGGCTCTCGGCGACGCGGCCATGGACGGAGCCAGAGTCGGGCAGTGGGCGGAG
CCGAT---GCCACTGAAACTCCCAGCCTTCGAGGAGCCCTCCGCGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CGGCGGCAGGGACAG------------C------GGCAGCGGCATGGGCATAACTGACAGTGGGACCGCCGTGGAGATCC
CCTTCCCGTTCTGCCTACTTGGCCAGTGTTTCTTCTAAACATGGCGCATA----GTGCATGCACATGCACTAG---CTTC
TTGTACTTAGTGTACT--CTTACTAATTTTGCAATCATTTGTACACAACTA-----------------------------
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>chr3D_984
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---------------------------------------------------------------------ACATAGGATAT
AGC----T-AGGATGGACGGCCTCCACACGGAGCTCGCGCTGGGGCTGAT------------CGGCGAGCTCGAGACGGC
GCCGTTCGTGGCCAAGACGTACCAGCTGGTGAGCGACCCTAGGACGGACGCGTTTGTCAGGTGGGGGAGGGACAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGCAGCTCCTCCTCCCATGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACTCTTACGTGAGTAA-----------CTAGTGAGGCTTCCTTTCCCGTGCCGCCTTCCTTTGGCCT
TTGTT-GTCCTAGTAATACTAGTGATCCGTAGTCTGTTAATGGTACTCGA---------------CCTAGGCTTGCACGT
GCACTGTACT----CTTGC-----GAAATGTCT--------GCTTAATTTGTTAC---GATGAGATTGCTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCGTTCCTGAGCGGCCAGAAGCACCTTCTGCCGCGCATC
GTGCGCCGC---AAGAAGAAGCGCGGCGAGGCC------------TCTTGCTCGTCTCTCGTCGGCGGCGGCGAG-----
-CAGCACGTGGTGGCCAATATAGGAGAGGAAGTGGAGGAGGAAGAGGACGACGAGGGGAGGGAGGCGCTGCTCGAGGAGG
TTCGGAGGCTGCGGCAGGAGCAGACGGCTATTGGGGAGCAGCTGGCGCGGATGAGCCGGCGACTGCAGGCGACGGAGCTG
CGGAGTGACCAGCTCATGCCCTTACTTGCCCGGCTCGACGAGGATCCCAACGCCACCTCCCTCCACCTTCTTCAACAGGC
AGCCGAGAAGAAGCTCCAGCGCATGCAGTTGCCTTCCCGTGATTTTGCTTCCTTTCCCATTGTACCCCCGCTTCAC----
--------CCGGCGCCTTCACCGCTATTGGCTCTCGGCGACACGGCCATGGGCGGAGCCAGAGTCGGGCAATGGGCGGAG
TCGAT---GCCACTGAAACTCCCAACCTTCGAGGAGCCCTCTGCGAGCTCCGGGGTGCAGCAGGTACCGGAGTTCGAGGG
CG------------GCGGCAGGGATAGC------GGCAGCGGCATGGGCATAACTAACAGTGGGACCGCAGTGGAGATCC
CCTTCCCGTTCTGCCTGCTTGGCCAGTGTTTCTTCTAAACATGGCGCATA----GTGCATGCAC------TAG---CTTC
TTGTACTTAGTGTAC----TTACTAATTTAGCAATCATTTGTACACA---------------------------------
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>chr3B_1070
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-CCGTTCGTGGCCAAGACGTACCAGCTGGTGAGCGACCCTAGGACGGACGCGCTCGTTAGGTGGGGGAGGGACAACAACA
GCTTCCTCGTCACCGACGTCGCCGGCTTCTCGGAGCTCCTCCTCCCATGCTTCTTCAAGCACGGCAACTTCTCCAGCTTC
GTCCGCCAGCTCAACTCTTACGTGAGTAC-----------CTAGTGAGGCATCCTTTCCCGTGCCGCCTTCCTTTGGCCT
TTGTT-GTCCTAGTAATACTAGTGATCCGTAGTCTGTTAATGGTACTCGA---------------TCTAGGCTTGCACGT
GCACTGTACT----CTTGC-----GAAATGTCT--------GCTTAATGTGCTAC---GATGAGATTGCTGTGCAGGGCT
TCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAGTCATTCCTTCGCGGCCAGACGCACCTTCTGCCGCGCATC
GTGCGCCGC---AAGAAGAAGCGCGGCGAGACC------------TCTTGCTCGTCTCTAGTCGGCGGCGGCGAG-----
-CAGCATGTGATGGCCAATATAGGAGAGGAAGTGGAGGAGGGAGAGGACGACGAGGGGAGGGAGGCGCTGCTCGAGGAGG
TTCGGAGGCTGCGGCAGGAGCAAACGGCTATTGGGGAGCAGCTGGCGCGGATGAGCCGGCGACTGCAGGCGACGAAGCGG
CTGAGTGACCGGCTCATGCCCTTCCTCGCCCGGCTCGACGAGGATCCCAACGCCACCTCCCTCCACCTGCTCCAACAGGC
AGCCGAGAAGAAGCTGCAGCGCATGAAGTTGCCTTCCCGTGATTTTGCTTCCTTTCCCATTGCACCCCCGCTTCAC----
--------CTGGCGCCTTCACCGCTATTGGCTCTCGGCGACGAAGCCATGTGCGGCGCCAGAGTCGGGCAATGGGCGGAG
CCGAT---GCCACTGAAACTCCCAACCTTGGAGGAGCCCTCCACGAGCTCCGGGGTGCAGCAGGTGCCGGAGTTCGAGGG
CG------------GCGGCAGGGACAGC------GGCAGCGGCACGGGCATAACTGACAGTGGGACCGCAGTGGAGATCC
CCTTCCCGTTCTGCCTACTTGGCCAGTGTTTCTTCTAAACATGGCGCATA----GTGCATGCACATGCACTAG---CTTC
TTGTACTTAGTGTACAGCCTTGCTAATTTAGCAATCATTTGTACACA---------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-------S-----------------S
-----------------------------------------SS-----------S-SS----------------------
-S---S------S-----------------------------------------------------------------S-
SS----------------SSS-------------------------S---------------------------------
-------S-------------SS---------------------------------------------------------
----S---------------------------------------------S-----------------------------
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------------------------------------------------------------S-------------------
------------------------------S-------------------------SSSSSSS----------S------
-----------S--------------------S-----------------------------S-----------------
------------------------------S-------------------------------------------------
----------------------------------------------S--------S------------------------
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-------------S------------------------------------------------------------------
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-------------------------------------S---------S--------------------------------
S-------------------------------------------------------------------------------
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----------------------------------------------------------S----------------S----
-S---------------------------------------S--S-----------------------------------
---------------S----------------------------------------------------------------
----------------------------------------S---------------------------------------
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--------------------------------------S--------------------S---S----------------
------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_1097
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-------------------------------------CCGTGTGAAGGATCGACACA-----------------------
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>reverse_3005
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--------------------------------------------TCCACGCCGTTGTATCTCAC----------------
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