>input_sequence_58758
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-------------------------------------------ATGCTCCACCTTCAGATGCACCCTCTCCCGCTGCCCC
GCGCCGCCCCCCACCCTACCACGGCCACGCTCTCCTACTCTCTCCACCGCCGCCTCGCTCTCTCCGC------CTCCGCC
TCCACCACCCCATTCTCAACCGAGGAGTACCTCGTCGCCACCTGCGGTCTCACCCGAGCCCAGGCGCTCAAGGCGTCCAA
GAAGCTCTGCCACCTCAAGTCCGCCTCCAACCCAGACGCCGTGCTCGCCCTCCTCTCCGGCGTCGGCCTCTCCCGCCCGG
ACATCGCCGCCGTCGTCGCCGCCGACCCGCTGCTCCTCCGGTCCAGGGTGGACAACGTCGCCCCCCGCCTCTCTGCCCTC
CGCGACCGCCTCGGCCTCTCTGCGCCCGAGATCGCCAGCTTCCTCCTGGTGGGCGCCACGGCCCTCCGCTCCTGCGACAT
CACGCCCAAGCTCGAGTTCTGGATCCCCTTCTTTGGCTCCTTGGGCAAGCTCCTCCAGACCATGAAGAGGAACAGGTCCA
TCCTGACCACCGATCTGGAGAAGGTCGCCAAGCCCAACATTGCGCTGCTGGAGCAGTGCGGGCTAAGTGTTTGTGATATT
GTCAAGCTGTCGACGCCCTGTTCTAGGCTGCTAGTGTTCAACCCAGAGCGGGTGAAGGCGTTTGTGCTGCGCGCCAAGAA
GCTTGGCGTGCCCCGCTCCTCGTATATATTCAAGTACGCGGTGGGTGTCGCGTGTTCTATCACGGAAGACAAGGTCGCCG
CAAGGATGGAGTTCTTGAGGAGCACTCTTGGTTGCTCCATGGACAAGGTGCGTGTTGCGGTTCGCAACAAGCCACACATT
CTAGGAATATCCGAGGAGAAACTCCGTCTCAAGATAGAGTTCATGGTCGATGAGGTTGGTTTGGATCCAGACTACATTGT
TGAGAGGCCCATGCTGTTTACCTACAGCCTGGAGAAGCGGATGAAACCCCGGTATTATGTCGCAAAGATCCTGCAGGCTA
AGGGACTGATGAAGAAAAGTGTCGGCTTCCGGCGAGTAGTTGGCTATGGTGAGGATAATTTCATTCCAACATACATCGAC
AGTCATCAGAACAATGTTCCTGGGCTTGCAAATGCTTATGCAGCAGCTTGTGCTGGGGAAATGCTACTGATGTCCAGCTT
TGAATGCAGACATTGA----------------------------------------------------------------
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>chr4D_1_TraesCS4D01G100800
GGGATTCGTGCCTCCGTGTATGCCGATGATGATGCTGTTTTTTGTGCCCCTTATAAGGAGGATGTCCAATTCCTGTCAAC
CATGTCAGCTTCCTTTGGTGAGTCCACAGGCTTGTCCACTGACTACGCCAAGAGTATTGTTGCGGCCATGAGATGTGCCA
ATGTGGACCTCGATGATATTCTTCAGTCCTTCCTGGCCTGTGGTTCCTCCTTCCCTATCCGCTACCATGGTCTCCCTCTC
GCCATTAAGAGAATTAAGAGGATTCACTTATAGCTCCTAGAGGACAAGGCTGCTGGCAAATTGGTGCCTTGGAAAGGCAA
GCATGTTGCTATCTCGGGTCTGGAGCCGAGCACGGGTCCCGCCGGCCGCGCGTCACTGTTGCACGTCTTGCCCTGCGTCA
TGCAGTGATTGTCGTCGTGGGCTACAGTGGCGAGCCGCGCTAACGTCAGTCGCCTCGGTCAGCGGACACGGCAGCACTGT
AGCCACGCTCTCCTGTTGTGGAAGGGTTGTCTTGTCATACGGATGGATGGGACGGCCGCTGACCCATTGCCAGCCGGCAA
GTGGCCAGCCGCTGGCCCGTATCGGGAAGCCGGATGGAGGGCCAGTCGGACTGAGGGGCGCCAGCTGGGTCCCGGTGCTT
ATCCGGGGGTCATCCCCCCGACAGGTTTTGTTTGTGCAGAGAGGATTAGAGAAAGAGGCCCGTGAACATCGTGTAACTGG
TCCATCTAGCAATTTCGAGGGACAACAAGTTAGTGTATCCCTAGTATAATTATTTACTCTACTTTTGTTTCTTCTACGGA
AATAGTGTGTGCTTGTTCTGGATTACATTTTTCGGACTTGTGAATTTTGGTTGCATTTGGTCATCTGCGAGTTCGCGAGC
ACGATAGCGCTCCCGGATTGAAAGCTCTATCTTTGTCTTGATACCGAGCATAGGAGCAGCAAAACCATTTCAGTCCGCCA
GCCAACCAACGGCGACTTGCCGGC---CGCCGCCGCCGCCGCCATGCTCCACCTTCAGATGCACCCTCTCCCGCTGCCCC
GCGCCGCCCCCCACCCTACCACGGCCACGCTCTCCTACTCTCTCCACCGCCGCCTCGCTCTCTCCGC------CTCCGCC
TCCACCACCCCATTCTCAACCGAGGAGTACCTCGTCGCCACCTGCGGTCTCACCCGAGCCCAGGCGCTCAAGGCGTCCAA
GAAGCTCTGCCACCTCAAGTCCGCCTCCAACCCAGACGCCGTGCTCGCCCTCCTCTCCGGCGTCGGCCTCTCCCGCCCGG
ACATCGCCGCCGTCGTCGCCGCCGACCCGCTGCTCCTCCGGTCCAGGGTGGACAACGTCGCCCCCCGCCTCTCTGCCCTC
CGCGACCGCCTCGGCCTCTCTGCGCCCGAGATCGCCAGCTTCCTCCTGGTGGGCGCCACGGCCCTCCGCTCCTGCGACAT
CACGCCCAAGCTCGAGTTCTGGATCCCCTTCTTTGGCTCCTTGGGCAAGCTCCTCCAGACCATGAAGAGGAACAGGTCCA
TCCTGACCACCGATCTGGAGAAGGTCGCCAAGCCCAACATTGCGCTGCTGGAGCAGTGCGGGCTAAGTGTTTGTGATATT
GTCAAGCTGTCGACGCCCTGTTCTAGGCTGCTAGTGTTCAACCCAGAGCGGGTGAAGGCGTTTGTGCTGCGCGCCAAGAA
GCTTGGCGTGCCCCGCTCCTCGTATATATTCAAGTACGCGGTGGGTGTCGCGTGTTCTATCACGGAAGACAAGGTCGCCG
CAAGGATGGAGTTCTTGAGGAGCACTCTTGGTTGCTCCATGGACAAGGTGCGTGTTGCGGTTCGCAACAAGCCACACATT
CTAGGAATATCCGAGGAGAAACTCCGTCTCAAGATAGAGTTCATGGTCGATGAGGTTGGTTTGGATCCAGACTACATTGT
TGAGAGGCCCATGCTGTTTACCTACAGCCTGGAGAAGCGGATGAAACCCCGGTATTATGTCGCAAAGATCCTGCAGGCTA
AGGGACTGATGAAGAAAAGTGTCGGCTTCCGGCGAGTAGTTGGCTATGGTGAGGATAATTTCATTCCAACATACATCGAC
AGTCATCAGAACAATGTTCCTGGGCTTGCAAATGCTTATGCAGCAGCTTGTGCTGGGGAAATGCTACTGATGTCCAGCTT
TGAATGCAGACATTGAAGGTTCATCATATATCTTAGGCTCATAACTAGCATGGAACATTGAGCCCTAATACACATTAGTG
AGTACTCATTCATGGTAATGCCTTTTCAAAGCATGATTGTAGCTCAAGAAATCATGATTTTAGCCGCAGAACTATGGCAA
TCTGATTGCTCGTGATGCTATCCATGTTTCAGTTGTGAATTTCTGTGAAGCAACTTTATTGTCTCAGTTTTGCTGCCCTA
CAACTAATGTATCATAGCTTCCTGTAATTGAGAAAGTGATGTTTTCACAGCTACATATTCGCTCCCTTGTGCCTTAGACA
TTCTGTTGCAGCTTTCAGGTTTCAACTGACTTTTGTGTTTGCTTATAGGGGTAATTAAGTTCACACTTCTGTTGCATAGT
CAAATCATTTTTTGCTAAATATGCACGTTTGTTATTGTAGTTCAAATGGTACGGAGGGGGTACTAAATTTTGATTTTGAT
GACATGGACAAATTCACCTGAGAAATGGAATTTTGCATCGAAACCTCATGTTAATCTTTTGTGTATAGTTAATCGTTAAA
CAGCAATCCAAAAACTATGCTTGTTAAAAGACTGATGTAGTGATAGAATTTTCAAAGGTTTGGATCTTTTTTTTTGAGGG
GTAGGTTTGGATCTCATAGGTGCCGATGTTCATGTTGACAATGACCTGGGACATGGTCGCCAAAACGGTACTTTTTTTCA
TGTAAAGTGGAGCATACCCTGTCAAGTCTGGCAACTTCAATCACCAGCGCAGTATTTCGTTTATTTTGGACCGACGTAAA
CCCACAGGTACAAATCACCCGAATTCAACCAATCAAACAGGGCATGTGAATGACATGGATAACTTTGCGGAAAAAAAAAC
ATGTTCAAATTCTATTGCTTTTGACCACACTTGCCCCGTTGAAGTAATCAAATGGTTTCACCATTTATTTACTCCTTTCT
TTTATCTCTTAGCTACATTAAATTTTCCCCAGGAAACCTGAACGAAAAAACTTTGC
>chr4B_829
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----------------------------TTTTCGTACTAGTGAATTTTGGTTGCATTTGGTCATCTGCGAGTTCGCGAGC
ACGATAGCGCTCCCCGATTGAAA-----------------------------------------CCATTTCAGTCCGCCA
GCCAACCAGCAGCAACTTGCCGGCCGCCGCCGCCGCCGCCGCCATGCTCCAGCTCCAGATGCACCCTCTCCCGCTGCCCC
GCGCAGCCCCCCACCCTACCACGGCCACGCTCTCCTACTCTCTCCACCGCCGCCTCGCTCTCTCCGCCTCCGCCTCCGCC
TCCACCACCCCATTCTCAACCGAGGAGTACCTCATCGCCACCTGCGGTCTCACCCGAGCCCAGGCGCTCAAGGCGTCCAA
GAAGCTCCGCCACCTCAAGTCCGCCTCCAACCCAGACGCCGTGCTCGCCCTCCTCTCCGGCGTCGGCCTCTCCCGCCCGG
ACATCGCCGCCGTCGTCGCCGCGGACCCGCTGCTCCTCCGCTCCAGGGTGGACAACGTCGGCCCCCGCCTCACGGCCCTC
CGCGACCGCCTCGGCCTCTCCGAGCCCGAGATCGCCAGCTTCCTCCTGGTGGGCGCCACGGCCCTCCGGTCATGCGACAT
CACGCCCAAGCTCGAGTTCTGGATCCCCTTCTTCGGCTCCTTCAGCAAGCTCCTCCAGACCATGAAGAGGAACAGGTCCA
TCCTGACCACCGATCTGGAGAAGGTGGCCAAGCCCAACATAGCGCTGCTGGAGCAGTGCGGGCTAAGTGTTTGTGATATT
GTCAAGCTGTCGACGCCCTGTTCTAGGCTGCTAGTGTTCAACCCAGAGCGGGTGAAGGCGTTTGTGCTGCGCGCCGAGAA
GCTTGGCGTGCCCCGCTCCTCGTATATATTCAAGTACGCGGTGGCTGTCGCGTGTTCTATCACGGAAGACAAGGTCGCCG
CGAGGATGGAGTTCTTGAGGAGCACTCTTGGTTGCTCCATGGACAAGGTGCGTGTTGCGGTTCGGAACAAGCCGCACATT
CTAGGAATATCAGAGGATAAACTCCGTCTCAAGATAGAGTTCATGGTCAATGAGGTTGGTTTGGACCCAGAGTACATTGT
CAAGAGACCCATGCTGTTTACCTACAGCCTGGAGAAGCGGATGAAACCCCGGTATTATGTCGCAAAGATCCTGCAGGCTA
AGGGACTGATGAAGAAAAGTGTCGGCTTCCGGCGATTAGTTGGCTATGGTGAGGATAACTTCATTGCAACATACATCGAC
AGTCATAAGGACACTGTTCCTGGGCTTGTAGATGCTTATGCAGCAGCTCGTGCTGGGGAGATGCTTCTGATGTCCAGCTT
TGAATGCAGACATTGAAGGTTCATCATATATCTTAGGCTCATAGCTAGCATGGAACATTGTGCCCTGATACACATTAGTG
AGTACTCATTCGTGGTAATGCCTTTTCAAAGCATGATTGTAGCTCAAGAAATCATGATTTTAGCCGCAGAACTATGGCAA
TCTGATTGCTCGTGATGCTATCTATGTTTCAGTTGTGAATTTCTGTGAAGCAACTTGATTGTCTCAGTTTTGCTGCCCTA
CAACTAATGTATCATAGCTTCCTGTAATTGAGAAAGTGATGTTTTCGCAGCTACATATTCGCTCCCTTGTGCCTTAGACA
TCCTGTTGCAGCTTTCAGGTTTCAACTGACTTTTGTGTTTGTTTATAGGGGT-ATTAAGTTCACATTTCTGTTGCATAGT
CAAATCATTTTTGGCTAAATATGCACGTTTGTTATTGTATTTCAAATGGAGCGGAGGGAGTATTAAATTTTGATTTTGAT
GAAATGGACAAATTCACCTGAGAAATGGAACTTTGCATCAAAACTCATGTT---TCTTTTATGTATAGTTAATCGTTAAA
CAACAATCCAAAAACTAT-CTTGTTAAAAGACTGATGTGGTGATAGAATTTTCAAAGGT---------------------
------TTGGATCTCATAGGTGCCGATGTTCATGTTGACAATGACCTCGGAC-TGGTCGCCAAAACGGTACATTTTTTCA
TGTAAAATGGAGCATACCCTGTCAAGTCTGGCAACTTCAATCACCAGCGCAGTATTTCGTTTATTTTGGACCAACGTAAA
CCCACAGGTACAAATCACCCGAATTCAACCAATCAAACAGGGCATGTGAACGATATGGATAACTTTGTGGGAAAAAAAAC
ATGTTCAAATTCTATTGCTTTTGACCACACTTGCCCCGTTGAAGTAATCAAATGGTTTCACCATTTATTTACTCATTTTT
TGTATCTCTTAGCTACATTAAATTTTCCCCAGGAAACTTGAACGAAAAAACTTTGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S-----------------------------------------
--------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--------S-S--S-------------------------------------S--S-------------------------
----S---------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-------S------------------------------------------------------------------------
----------------------S-----------------S-------------------S----------S-S------
--------------------S-S---------------------------------------------S--S--------
---------------------------------S--------SS------------------------------------
-------------------------S--------------S---------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------S-----------------------------------
-S--------------------------------------------------------------S--------S------
-----------S-----S------------------------------S----------------S-----S--------
SS----S-------------------------------------------------------------------------
-----------------------------------S----------------------S------S--------------
------S--S---S--------------S-S-----------------S----------S-----S--------------
-------------------------------------------S----------------S-----S-------------
-----------S--------------------------------------------------------------------
----------------------S---------------------------------S-----------------------
----------------------------------------------S---------------------------------
-S---------------------------------------S----------S------------S--------------
------------S--------------------------S---------SS-------S---S-----------------
--S---------------------------S--------S----SSSSSS-SSS------S-------------------
--S---------------S-------------------S--------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------------------------------------S----S------------------S--------
------S-----------------------------------------------------------------S-------
--------------------------------------------------S--S-------------S--S---------
--------------------------------------------------------------------------S---S-
-S-----------------------------------S------------------
>forward_247
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-------------------------------------------------------------------TGGTCTCCCTCTC
GCCATTA-------------------------------------------------------------------------
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>reverse_2090
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---------AACAATGTTCCTGGGCTTGC---------------------------------------------------
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>forward_329
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---------------------------------------------------------------------TGGAAAGGCAA
GCATGTTGC-----------------------------------------------------------------------
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>reverse_2129
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------------------------------------------------TGTGCTGGGGAAATGCTACT------------
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>forward_504
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----ACGCTCTCCTGTTGTGGAAG--------------------------------------------------------
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>reverse_2482
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-TCTGTTGCAGCTTTCAGGTT-----------------------------------------------------------
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