>input_sequence_58739
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-------------------------------------------------------------------------ATGTCCG
GCGGCGACCTGCGCAGCCTGGCGGCGGTCTCGGCCACGGTGACCGCGGCCATGTGCTACGTCCGTTTCGCGGCCGGGCGC
CTCCGCCCGGGCCTGCCCCGCCTCACCGCGTTCCTCCCGGTGCTCGCCGTCCTCCCGTTCCTCCCCTTCGCCTTCAGCGC
CATCCACCCGCGCGCCATCTCTGGGTTCTTCCTCGCCTGGCTCGCCGAGTTCAAGCTCCTCCGCCTCGCCGCCGGCAAGG
GGCCCCTCCACCCGTCCCTCCCGTTCCCCGCATTTGTCGCCGTCGCCTCCGGCCCGGTCAGGCTCCACGGCGACGGGCCC
GACAAGGCTCAAGGCACGTCGTCGGGCCTGGACCTCGCCTCCTCCGCCGTCATGGCCGCGCTGCTCGCCGTCATCGTGTC
GCTGTACTGGTACCAGGAGGCGATGAACCAGTACGTCCTGCTCACCCTCTACGCGTTCCACGTGTACCTGGCCCTGGAGC
TGGTCCTGGCGTCGGCGGCCGCGGCGGCGCGCGCGCTGCTGGGCATGGATCTGGAGCCGCAGTTCGACCGGCCGTACCTG
TCGGCGTCGCTGCGGGACTTCTGGGGCCGGCGCTGGAACCTCTCTGTCCCCGCCGTGCTCCGGCCGTGCGTGCACCGCCC
CGTGCGCGCGCGCCTGGGCACCGCCGCGGGGGTGCTGGCGACGTTCCTGGTGTCCGGGCTGGTGCACGAGCTCATGTTCT
ACTACATCACGCTGCGGCCGCCCACCGGGGAGGCGACGGCCTTCTTCACGCTGCACGGCGCGTGCGCGGTGGCGGAGGCG
TGGTGGGCGAGGCACGACGCGTGGTGGCGCCCGCCGCGGCTGGTGGCCACCCCGCTGACGCTGGCATTCGTGCTCGTGAC
GGCCTTCTGGCTCTTCTTCCCGCCGATCACGAGGCCCGGGGCCGACAAGCTGGTGATCGCCGAGTGCGAGGCGGCCGTCG
CGTTCGTGCGGGGCGCCGGGGCCTGGGCGGCTGGC----------------GGACTGAGCGCTCGTAGTACGGAGACGGC
GGGTGCGTCACGCCTGATGCGCCCGCGAAGAATGGCTCGTTGCTCAGGCGGCAATTTTTGTGTGTATTGCGCCTATGGCT
GTCGAGTTGTTATGAAAATGTACCGAAACAAATCGATAGCTTGGTTGCTCGTTTAA------------------------
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>chr2A_1_TraesCS2A01G323400
GCGAGGAGGTTCTACCCGGCCGAGGACTACCACCAGCAGTACCTGGAGAAGGGCGGCCAGTCCGCCAAGAAGCGCTGCTC
CGACCCCATCCGCTGCTATGGCTGAGCCTCAAGGTCATGGAGCACTGCCCCAGTCTCCGCCCGCCATTGCAGCTAGCTAA
GCATCGCCATTAGCATCATAAAGGACACACCATCTGCCTGCCTGACTGTTGGTGTTACAATAAATAAACCCATGCGTGCA
GCGTGTAAAGGTGAACTTGGCGCTTTTGTTTGCTCGATGATCTATGTTTATTTTGGTGTTTGCCGTGTACAAGTTTTGCA
AGCGGGCATAATCCACTACCACTAGCGTTCAGGCTTCACTCCTCTGTATGGGCGTTTGAATTTGGGGGCGAATCAGCAAT
TCACCGTACAACCCGTGGGGCCCTGGCAATGAGATGCACTTGCGCTGTGTTTTCTCCTTAACTAGAAATCCTCATTCCAT
TCATTCAAAAGGGCTAAAGCTTTGATCTCTCACCACATGACACATGTGGTGAGCAATCCAAACTATTCAAAACAAAGCTT
TAATCTCTCTCAAGAAAACTCCATTGAGGGATAATGGCTCCAGGAGGAGTTGTTGATCGCCTCAACCATCTGCTTCAATC
ACGTCGTTGGCTATGCCCCATTC----TTGTTTCAATCCACTTGGGCTGTTGGG--------TGGGCTAGCATATTACCA
CTAGCATG---------------------TTTCCCTTTGGACGTTTGGTTCTGGCGAAACCGCAACATTATAAAATGATG
ACAGCGTCACCTCAAAAAAAAATGATGACAGCGGCGGGGCAGCCAAAAGAAGAAAATAAAAATGAGCCAATTATCGTGCT
TCCATCTCCCAACTGAGCTTACACCGTTGACTCGAAGAAGACCACCACGAAATTCCCGATCTCTCGCGCGCTCCTGGATC
TTGTAAACCTCTACCAGAAGGCAGCGCGGGTAACCTCCGGTGGCCGTCGCATCTGGGCCGACGACGATCAAGAATGTCCG
GCGGCGACCTGCGCAGCCTGGCGGCGGTCTCGGCCACGGTGACCGCGGCCATGTGCTACGTCCGTTTCGCGGCCGGGCGC
CTCCGCCCGGGCCTGCCCCGCCTCACCGCGTTCCTCCCGGTGCTCGCCGTCCTCCCGTTCCTCCCCTTCGCCTTCAGCGC
CATCCACCCGCGCGCCATCTCTGGGTTCTTCCTCGCCTGGCTCGCCGAGTTCAAGCTCCTCCGCCTCGCCGCCGGCAAGG
GGCCCCTCCACCCGTCCCTCCCGTTCCCCGCATTTGTCGCCGTCGCCTCCGGCCCGGTCAGGCTCCACGGCGACGGGCCC
GACAAGGCTCAAGGCACGTCGTCGGGCCTGGACCTCGCCTCCTCCGCCGTCATGGCCGCGCTGCTCGCCGTCATCGTGTC
GCTGTACTGGTACCAGGAGGCGATGAACCAGTACGTCCTGCTCACCCTCTACGCGTTCCACGTGTACCTGGCCCTGGAGC
TGGTCCTGGCGTCGGCGGCCGCGGCGGCGCGCGCGCTGCTGGGCATGGATCTGGAGCCGCAGTTCGACCGGCCGTACCTG
TCGGCGTCGCTGCGGGACTTCTGGGGCCGGCGCTGGAACCTCTCTGTCCCCGCCGTGCTCCGGCCGTGCGTGCACCGCCC
CGTGCGCGCGCGCCTGGGCACCGCCGCGGGGGTGCTGGCGACGTTCCTGGTGTCCGGGCTGGTGCACGAGCTCATGTTCT
ACTACATCACGCTGCGGCCGCCCACCGGGGAGGCGACGGCCTTCTTCACGCTGCACGGCGCGTGCGCGGTGGCGGAGGCG
TGGTGGGCGAGGCACGACGCGTGGTGGCGCCCGCCGCGGCTGGTGGCCACCCCGCTGACGCTGGCATTCGTGCTCGTGAC
GGCCTTCTGGCTCTTCTTCCCGCCGATCACGAGGCCCGGGGCCGACAAGCTGGTGATCGCCGAGTGCGAGGCGGCCGTCG
CGTTCGTGCGGGGCGCCGGGGCCTGGGCGGCTGGC----------------GGACTGAGCGCTCGTAGTACGGAGACGGC
GGGTGCGTCACGCCTGATGCGCCCGCGAAGAATGGCTCGTTGCTCAGGCGGCAATTTTTGTGTGTATTGCGCCTATGGCT
GTCGAGTTGTTATGAAAATGTACCGAAACAAATCGATAGCTTGGTTGCTCGTTTAATTTTTACTCCCTCCGTTCTAAAAT
ACTAAAATAGATGACTCAATTTTGTACTAACTTTAGTACAAAGTTGAAATAGATGACTCAATTTTGTACTAACTTTAGTA
CAAAGTTGGGTCATCTATTTTGAAACAGAGGGAGTATATTTTTGCGGAATGGTTACTCGTTTATTACTCGCTTCTCACAC
CAATGAACTGACGATGGTTGACAGTACCAATGGCACACCCAAAATACGGAGCATCAGATCACAGCACCAGCATAGAAATG
TGCCAATCAAATTTGTTTCAAATCCATATAAATGTCCCAATCCAAATTTGCTTCAAATCCATGTATTTAAAAAGTTATTT
ATATAGCCTTCGGGTGCAGGCCATGCAGCCTCTTTCCTATCGTTCCTCGACACCAAACTGCTGCCGAATGTTCCATAACC
TGAACATGTACATACTCCTCATCTTTTCAAGTTACAGTACAGTACATTTCAAATCTCCCAACATAGGCAAACAAGCACCT
GTATGTTCCCGCGATGCAAAAACTAGGTATCACGCACTGGCGCTCAAAACACCAGTTCTCAGTCCGTCACCGCTGATCAC
CCCCC------------ACAATGAATACTTCATCTCATGGCCTCGGCCTCTTGATGTCTCTCTCGGCGCTGCGGTCATTG
CTCCTGTGCTCGTGCGCGTCCTTCCTCTTCCGGTTGTCGGGGCCAGGAGAGCGGTATTCCTGGCCATCCAGGGACAGCTC
GCCCTCTTCGGTGTTCTCCGCCTTGCGAGCCGTGTTCTGGTGATCCTCCCGGTGCGCGGGGTGGGGCCAGCTCTGCCTTC
TGTCGTGTTTTTTCTCGTCCTCGGCAGCCAACTCCACGCCATGTTCCAGCTCCCTCTCAATCAGGTCATCATCATCCATG
ACGTCCACTTTCCTACCAGCATCGCCTTTCGACTTCCTCCGTTTCTCCAGCGCAGCTTTCACCTTATCCTTATCTATCTT
TTTCATCGCATCCATCATTGATGAGGAC
>chr2D_554
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-------------------------------------------------------------------------AAAGCTT
TAATCTCTCTCAGTAAAACTCTATTGGGGGTTCATGGCTCCCC---GAGTTGTTGATCGCCTCAACCATCTGCTTCAATC
ATGACGTTGGTCATACTCCATTCTTGTTTGTTTCAATCCACTTGGGCTGTTGGGCACTTAGGTGGGCTAGCAGATTACCA
CTAGCATGGATTCTTCTGCTACTAATATGTTTCCCTTTCGACATTATATAATG---------------------------
---------------------ATGATGACA---GCGGGGCAGCCAAAAGAAGAAGAAAATCCTACTT--ATTATCGTGCT
TCCATCTGCCAAGTGAGCTCACACTGTTGACTCGAAGAAGACCACCACGAAATTCCCGATCTCGCGCGTGCTCCTGGATC
TTGTAAAGCTCTACAATAAGGCGGCGCGAGTAACCTCCGGTGGCCGTCACATCTGGGCAAACGGCCATCAAGAATGGCCG
GCGGCGACCTGCGCAGCCTGGCGGCGGTCTCGGCCGCGGTGACCGCGGCCATGTGCTACGTCCGTTTCGCCGCCGGGCGC
CTCCGCCCGGGCCTGCCCCGCCTCGCCGCGTTCCTCCCGGTGCTCGCCGCCCTCCTGTTCCTCCCCTTCGCCTTCCGCGC
CATCCACCCGCGCGCCATCTCCGGGTTCTTCCTCGCCTGGCTCGCCGAGTTCAAGCTCCTCCGCCTCGCCGCCGGGCAGG
GCCCCCTCCACCCGTCCCTCCCGTTGCCCGCCTTCGTCGCCGTCGCCTCCGGCCCCGTCAGGCTCCGCGGCGACGGGCCC
GACAAGGCTCAAGGCACGTCGTCGGGCCTGGACCTCGCCTCCTCCGCCGTCATGGCCGCGCTGCTCGCCGTCATCGTGTC
GCTGTACCGGTACCAGGAGGTGATGAACCAGTACGTCCTGCTCACACTCTACGCGTTCCACGTGTACTTGGCCCTGGAGC
TGGTCCTGGCGTCGGCGGCCGCGGCGGCGCGCGCGCTGCTGGGCATGGATCTGGAGCCGCAGTTCGACCGGCCGTACCTG
TCGGCGTCGCTGCGGGACTTCTGGGGCCGGCGCTGGAACCTGTCGGTGCCCGCCGTGCTCCGGCCGTGCGTGTACCGCCC
CGTGCGCGCGCGCCTGGGCCAGCCCGCGGGGGTGCTCGCGACGTTCCTGGTGTCCGGGCTGGTGCACGAGCTCATGTTCT
ACTACATCACGCTGCGGCCGCCCACCGGGGAGGCGACGGCATTCTTCGCGCTGCACGGCGCGTGCGCGGTGGCGGAGGCG
TGGTGGGCGAGGCACGAGGCGTGGTGGCGCCCGCCGCGGCTGGTGGCCACCCCGCTGACGCTGGCGTTCGTGCTCGTGAC
GGCCTTCTGGCTCTTCTTCCCGCCGATCACGAGGCCCGGGGCAGACAAGCTGGTGATCGCCGAGTGCGAGGCGGCCGTCG
CGTTCGTGCGGGACGCCGGGGCCTGGGCGGCCGGCTCCGTCCGGTCGGTCTGGACTGGGCGCTCGTAGTACGGAGACGGC
GGGTGCGTCACGCCTGATGCGCCCGCGAAGAATGGCTCGTTGCTCAGGCGGCAATTTTTGTGTGTATTGCGCCTGCGGCT
GTCTATTTGTTACGAAAATGTACCGAAACAAATCAATAGCCTGGTTATTAATCGCCGCCCGAGGGCAGCGATGGCCGGCG
GTGGCGTCAAGCTGACGGCCGTTCGTCGCCGTCAC---------------------------------------------
------------------TTTCAAATAGAGGGTCC--------------------CTCGTTCATTACTCGCTTCTCACAC
CAATTAACTGACGATGATTGACAGTACCAATGGCACACCCAAAATACGGAGCATCAGATCACAGCACCAGCATAGAAATG
TCCCAAACAAATTTGTTTCAAATCCATATAAATGTCCCAATCCAAAT--GCTTGGAATCCATGTATTTAAAATGCTATTT
ATATAGCCTACGGGTGCAGGCCATGCAGCCTCTTTCCTATCGTTCCTCAACACCAAACGGCTGCCGAATGTTCCATAACC
TGAACATGTACATACTCCTCATCTTTTCAAGTTACAGTACAGTACATTTCAAATCTCCCAGCATAGGCAAACAAGCACCT
GTATGTTCCCGCGATGCAAAAACTAGGTACCACGCATTGGCGCTCAAAACACCAGTTCTCAGTCCATCACCGCCGATCAC
CTTCGCCAGGGCGA-CGACAATGAATACTTCATCTCATGGCCTCAGCCTCTTGATGTCTCTCTCGGCGCTGCGGTCATTG
CTCCTGTGCTCGTGCACGTCCTTCCTCTTCCGGTTGTCGGGGCCAGGAGAGCGGTATTCCTGGCCATCCAGGGACAGCTC
GCCCTCTTCGGTGTTCTCCGCCTTGCAAGCCGTGTTCTGGTGATCCTCCCGGTGCGCGGGGTGGGGCCAGCTCTGCCTTC
TGTCGTGTTTTTTCTCGTCCTCGGCAGCCAACTCCACGCCATGTTCCAGCTCCCTCTCAATCAGGTCATCATCATCCATG
ACGTCCACTTTCCTACCAGCATCGCCTTTCGACTTCCTCCGTTTCTCCAGCGCAGCTTTCACCTTATCCTTATCTATCTT
TTTCATCGCATCCATCATTGATGAGGAC
>chr2B_788
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--------------------AATGATGACA---GCGGGGCAGCCAAAAGAAGAAGAAAAAAG-GAGCTAATTATCGTGCT
TCCATCTGCCAAGTGAGCTCACACTGTTGACTCGAAGAAGACCACCACGAAATTCCCGATCTCGCGCGTGCTCCTGCATC
TTGTAAACATCTAAAAGAAGGCGGCGCGAGTAACCTCCGGTGGCCGTCACTTCTGGGCGGACGGCCATCAAGAATGGCCG
GCGGCGACCTGCTCAGCCTGGCGGCGGTCTCGGCCGCGGTGACCGCGGCCATGTGCTACGCCCGTTTCGCGGCCGGGCGC
CTCCGCCCGGGCCTACCCCGCCTCGCCGCGTTCCTCCCGGTGCTCGCCGCCCTCCCGTTCCTCCCCTTCGCCTTCCACGC
CATCCACCCGCGCGCCATCTCCGGGTTCTTCCTCGCCTGACTCGCCGAGTTCAAGCTCCTCCGCCTCGCCGCCGGCCAGG
GCCCCCTCCACCCATCCCTCCCGTTCCCCGGATTCGTCGCAGTCGCCTCCGGCCCCGTCAGGCTCCGCGACGACGGGCCC
GACAAGGCTCAAGGCACGTCGTCGGGCCAGGACCTCGCCTCCTCCGCCGTCATGGCCGCGCTGCTCGCCGTCATCGTCTC
GCTGTACCGGTACCAGGAGCTGATGAACCAGTACGCCCTGCTCACCCTCTACGCGTTCCACGTGTACTTGGCCCTGGAGC
TGGTCCTGGCGTCGGCGGCCGCGGCGGCGCGCGCGCTGCTGGGCATGGATCTGGAGCCGCAGTTCGACCGGCCGTACCTG
TCGGCGTCGCTGCGGGATTTCTGGGGACGGCGCTGGAACCTGTCGGTGCCCGCCGTGCTCCGGCCGTGCGTGTACCGCCC
AGTGCGCGCGCGCCTGGGCCCGGCCGCGGGGGTGCTCGCGACGTTCCTGGTGTCCGGGCTGGTGCACGAGCTCATGTTCT
ACTACATCACGCTGCGGCCGCCCACCGGGGAGGCGACCGCCTTCTTCGCGCTGCACGGCGCGTGCGCGGTGGCGGAGGCG
TGGTGGGCGAGGCACGACGCGTGGTGGCGCCCGCCGCGGCTGGTGGCCACCCCGCTGACGCTGGCGTTCGTGCTCGTGAC
GGCGTTCTGGCTCTTCTTCCCGCCGATCACGAGGCCCGGGGCCGACAAGCTGGTGATCGCCGAGTGCGAGGCGGCCGTCG
CGTTCGTCCAGGACGCCGGCGCCTGGGCGGCCGGCTCCGTCCGGTCGGTCTGGACTGGGCGCTCGTAGTACGGAGACGGC
TGGTGCGTCACGCCTGATGCGCCCGCGAAGAATGGCTCGTTGCTCAGGCGGCAATTTTTGTGTGTATTGCGCCTGCGGCT
GTCGATTTGTTACGAAAATGTAAGGAAA----------------------------------------------------
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-------------------------------------------------------CTCGTTTATTACTCGCTTGTCACAC
CAATGAACTGACGATGATTGACAGTACTAATGGCACACCCAAAATACGGAGCATCAGATCACAGCACCAGCATAGAAATG
CCCCAATCAAATTTGTTTCAAATCCATATAAATGTCCCAATCCAAATTTGCTTCAAATCCATGCATTTAAAAAGTTATTT
ATATAGCATTCAGGTGCAGGCCATGTAGCCTCTTTCCTATCGTTCCTCAGCACCAAACTGCTGCCGAATGTTCCATAAC-
----CATGTACATACTCCTCATCTTTTCAAGTTAC-GTACAGTACATTTCAAATCGCCCAACATAGGCAAACAAGCACCT
GTATGTTCCCGCGATGCAAAAACTAGGTATCACGCACTGGCGCTCAAAACACCAGTTCTCAGTCTGTCACCGCTGATTGC
CCTCGCCAGGGCGACCGACAATGAATACTTCATCTCATGGCCTCGGCCTCTTGATGTCTCTCTCGGCGCTGCGGTCATTG
CTCCTGTGCTCGTGCGCGTCCTTCCTCTTCCGGTTGTCAGGGCCAGGAGAGCGGTATTCCTGGCCGTCCAGGGACAGCTC
GCCCTCTTCTGTGTTCTCCGCCTTGCGAGCCGTGTTCTGGTGATCCTCCCGATGCGCGGGGTGGGGCCAGCTCTGCCTTC
TGTCGTGTTTTTTCTCGTCCTCAGCAGCCAACTCCACGCCATGTTCCAGCTCCCTCTCAATTAGGTCATCATCATCCATG
ACTTCCACTTTCCTACCAGCATCGCCTTTCGACTTCCTCCGCTTCTCCAGCGCAGCTTTCACCTTATCCTTGTCTATCTT
TTTCATCGCATCCATCATTGATGAGGAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
------------SS-------S----S---S-S--------SSSSS----------------------------------
-S-S------SS--S-S-------------------------------------------------------S-------
--------------------------------------S---S--SSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS----------SSS---------------------S-S----S-----S------------
-------S----S------S----S--------------------------------------S----S-----------
--------------S-------S-----S-------------------S---------S----S-S----------S---
-----------------------------------S--------------------------------------------
------------------------S------------------------S-------------------------S----
---------------------S------------------------------------------------------S---
-S--------------------------------S--------------------S----------S-------------
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-------S------------S----------------------------------------------S------------
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-----------------------------------------S--S--S------------------------S-------
-------------------S-S--------------S-------------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------------------------------------------S--------------
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------------S------------------S-------------------------S----------------------
--------------------------------------------------------------------------SS----
-----S------S---------------------S-----S-----SS-SS-SSSSSSSSS-SSS-SS-SS-SSSSSSSS
SSSSSSSS-SSSSSSSSSSSS--SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---S---S------SSSSSSSSSSSSSSSSSSSSSSS-------------------------
----------------S---------------------------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
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--S-S---------------------------------------------------------------------------
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>forward_327
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-------------------------------------------------------------------TACAAGTTTTGCA
AGCGGGC-------------------------------------------------------------------------
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>reverse_1448
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-------TGGTACCAGGAGGCGATGAA-----------------------------------------------------
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>forward_893
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-------------------------------------------------------------------------TCGTGCT
TCCATCTCCCAAC-------------------------------------------------------------------
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>reverse_2058
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---------------------------------------------------------AGCGCTCGTAGTACGGAGA----
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>forward_1448
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--------------------------------------------------------------------CGTCATCGTGTC
GCTGTACT------------------------------------------------------------------------
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>reverse_2609
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------------------------------------------------GACACCAAACTGCTGCCGAA------------
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