>input_sequence_58717
--------------------------------------------------------------------------------
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---------------------------------------------------------------ATGGACGTGGAGATCCA
GCGGCCGCGGGAGGTGGGCAGCTGCAGGGTGGTCAAGGTGGACAAGGAGGCCGCCTGGGAGCTCTTCACCACCCAGGCCG
CCAACGAAGGCCGCACTGTGCGTCCTCTTTCTTTCCCTCCCTCCCCCCTCTTCTTCTTCTTCCCCCAGCTCCCCT-----
--CTTCTCCTGCCACAATTTCGTGTTGATTCTCTGTTCGATTCTCCAAGG------------CCGGATTCTCCGCCTTTT
CATGCCGTGGGTCCTCAAAATCCCACATTTATAGTCGGAGATCTTGTGCCGTAATTAACCGCCTTCGCGTGTTTGAGCCC
CCCTTATTAAGCAACTAGGAGTAACTTTTTCCTGTAAACGCAATTCATGGCG----------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGTTCCATCCTCTTCTTCTGCTACC
TGCTTGTCTTTTACAGATATACAGAAAACAAAGTAGCACTGTTAATTGATGAGAAAATGCATGGCATGTGCCTGATGATT
ACTTACTGTGTT------TCAGAGTGCTGTTTTTTCATGTCGACTTCAAGGGTGACTTTGGTTACATTGATTATCCCTAC
ATGTTGTGCAGGTCGCTGCTCACTTTGGGGCATCGTGGTGCGTCACGTCCCTGTCCATGAACTACAAGTTCGAGGAGCTC
GCCCAGACCCACCCCGACATGCTCTTCCTCTTCGTCGACGTCGATGATGTCCCGGTAACCAATCATTCAC----TCCCCT
AATTATTCTCGCCACATGGCTTGTTATTGTTTATACGCTTCAAAGCATCACATCATTCTTCGACAACAAGATTTAGACTC
AACTTTCTTCAGACTGAACAGAGAGGGGCTACCTACTCA----ATCAAATGATAAATTGACTCGACGTCTTGTCAAATAT
CTC-AAAGATTATGGCATGCTCGTTTCTCAATAAACAAGAATTACCCAAGTTTGTAATCTGTTCTCAACATGTGGCCTAG
TTAAGCGGAGACGTAATGATATGTTTTGTACATATATATTTGCAGGGCGTGTCTTCCAAGTTGGGGGTGAAGGCCATGCC
CACCTTCTTCCTCATCAAGGGCAAGGAGGTGGTGAAGAAGATCGTCGGCGCCAACTCGGACGAGCTCCACAAGATGGTGG
ACGCCTCCGACGACGATTCGCTCGGCTCTGCTGTCACCGCTCTCCCTGACATAGTCATCGAAAAATAG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>chr2B_1_TraesCS2B01G505100
CTAGCGTCCATCCCGTCGCTGGAGGAGGAGCTGAGCTGGGTGACCTCCGAGCTCGCCGCGGCGCAGGCAAGAGCGAGGGA
CATCGAAGAGGAGAAGAAGAAGACGACGTCCGAACAGCTAGACAAGGCACGGCGAGAGGCGGAGCGAGCCAAGGCGAGCG
CATGGCCGACGCAGGAGGAAGTCGCCGCGGGCAGGGAAGACGCGCGAGTGGCCAGGGTCGCGGTCCAGGCTATGGAGGCG
CGGCTGGAGGCCGTGTCGCGGGAGGTGCTCGCCGCGAAGGCGTCGGCGAAGACCGCCGCGCCCAGTGCAGGAGCA-CACC
ACCGCGGCGCCCATGGACTCGCCCAGCAGGAACCGAGGCAGC-GGCATCACTGGAAGGTCGCTACCACACCGTCATGGCC
AGCAGCCACTCCTCGCCGATGTCCTAGGCCGCCGACTGGTGCGAGGGTGAAGCTCACCTGCTTCCCTCCCATGCACTGAA
AGTGTTTGTTAAAATGCC----AGAGAGAGGAGGAAGCTCGTCAGCCCTGATGGATGGGCCCCACTTGTCATAAACGTGT
TTA--AATCTTGTAAACCGGTCATTTTCCGAAAGTGATAGTTTCTTGCCACGGGTTAGTAAAAAAGTGATAGTTTTTGGC
AAAAACTTGTAAAGTGGTAGTTTCTGGACACGTTTTCATGAAATGTGGTAGTTTTTGGTTAAATACTCGCTGCAACTAGG
TCATTGGTCTAGTATAGTAGTAGTAGAAGTAGTAAAACAAATAAATACCGGAACCGGACAAAGCGAGGCGGGACCGGGCC
TGACCCGGCGCGCACCTGCAGAATATAATCCTG-----TGCGCGGTGCGGCTTATCTGATGTGAGCGCATCACCAGCG-C
GTAGTGGATTGCCACTTCCTTCCTTTGCCTCCTTGCCTTTTCTCTCTCGGGACAGACAGGCTGTGATTTCCTTCTTCTTG
TTGTTCTTCTTGTTGCCGGAG------GAGGAAGAGGAGATAGACTAGGGAGGCGGC---GGCATGGACGTGGAGATCCA
GCGGCCGCGGGAGGTGGGCAGCTGCAGGGTGGTCAAGGTGGACAAGGAGGCCGCCTGGGAGCTCTTCACCACCCAGGCCG
CCAACGAAGGCCGCACTGTGCGTCCTCTTTCTTTCCCTCCCTCCCCCCTCTTCTTCTTCTTCCCCCAGCTCCCCT-----
--CTTCTCCTGCCACAATTTCGTGTTGATTCTCTGTTCGATTCTCCAAGG------------CCGGATTCTCCGCCTTTT
CATGCCGTGGGTCCTCAAAATCCCACATTTATAGTCGGAGATCTTGTGCCGTAATTAACCGCCTTCGCGTGTTTGAGCCC
CCCTTATTAAGCAACTAGGAGTAACTTTTTCCTGTAAACGCAATTCATGGCG----------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGTTCCATCCTCTTCTTCTGCTACC
TGCTTGTCTTTTACAGATATACAGAAAACAAAGTAGCACTGTTAATTGATGAGAAAATGCATGGCATGTGCCTGATGATT
ACTTACTGTGTT------TCAGAGTGCTGTTTTTTCATGTCGACTTCAAGGGTGACTTTGGTTACATTGATTATCCCTAC
ATGTTGTGCAGGTCGCTGCTCACTTTGGGGCATCGTGGTGCGTCACGTCCCTGTCCATGAACTACAAGTTCGAGGAGCTC
GCCCAGACCCACCCCGACATGCTCTTCCTCTTCGTCGACGTCGATGATGTCCCGGTAACCAATCATTCAC----TCCCCT
AATTATTCTCGCCACATGGCTTGTTATTGTTTATACGCTTCAAAGCATCACATCATTCTTCGACAACAAGATTTAGACTC
AACTTTCTTCAGACTGAACAGAGAGGGGCTACCTACTCA----ATCAAATGATAAATTGACTCGACGTCTTGTCAAATAT
CTC-AAAGATTATGGCATGCTCGTTTCTCAATAAACAAGAATTACCCAAGTTTGTAATCTGTTCTCAACATGTGGCCTAG
TTAAGCGGAGACGTAATGATATGTTTTGTACATATATATTTGCAGGGCGTGTCTTCCAAGTTGGGGGTGAAGGCCATGCC
CACCTTCTTCCTCATCAAGGGCAAGGAGGTGGTGAAGAAGATCGTCGGCGCCAACTCGGACGAGCTCCACAAGATGGTGG
ACGCCTCCGACGACGATTCGCTCGGCTCTGCTGTCACCGCTCTCCCTGACATAGTCATCGAAAAATAGCTGTTTTG-CCG
TCTCTGAATCTTATCCGAGTGCTGTTCGCTTGGTTCCGGTGTGTGTGTGTGTGTGTGTGTGTGACTCTGAATCTCATCTG
ATCTGATCTGATGTGTGTGCCCCTT-CCCGCTAGAGGAGAGTAGGGCGTGTGACTTGGCTACTGGCTAAGC---TTAATT
GTTGTCGATTAGTATATGCGTGTGTTCTTATTTTGGGGTTGGAAAAATGATGGTTCAGTGTAACTGTTCGCACACTTGTC
CGTTAATACAGTTGTG--TGTGTGACTGTCTGACAGGTGCTTGATCTTCTTTGCTCCCTTGTTACATCTTACT-------
--------------------------------------------------------------------------------
------ACATGTGAGATGAGAATTTTCTCTGGGTTGAACTAATAAAGGCGGGG-AAACGATGTGATCTCTGCTTCATCAC
CACAAAAGTGCAGATACAAAGCCAGATGATTTGGTTATTATACTGAACTTTCCCTGATTATGCAAGTAGCTGCTACTGCT
ATCTTGTTAGCTACTCCCTCCGTCCGGAAATACTTGTCATCAAAATAAATAAAAGGGGATGTATCTAGATGTATTTTAGT
TTTAGATACATCCTTTTTTATCCATTTTGATGACAACTATTTTCGGACGGAGGGAGTACGTGGGTGGATAGGT-------
--GGATCATATT----ATCGATCTCGGTGTTGGTACAGGTGCATCTGAATCAGTAT---TTTTCTTTGGGGAGGTGCATC
TGAATCAGTAG----GCAGATTCCCACTGAACCTAACCACCTTGGAATGAACAAAACTGCAACCCTCTTGCTGGCCCAGT
G------------CATCATGTGACCAGATCTCCAGACCAGACCAGCCACATGTTGGATTCAGCTCAGTGGTGCAGCCTGC
AGATTACCCTAGTACCA---TCCAAAGTAAAAAGGGCCAACT---AGAAAGCCAAAAGAGGATACATTATTGGAGAGGAC
TTTTGTCAGTTGTGGTACACACCACACAGTGAGGACAAAATCACTATTCTGACCCTTTCAACGAACTTTGTCACAAAATG
AACTCGA
>chr4A_1
CTAGCGTCCATCCCGTCGCTGGAGGAGGAACTGAGTCGGGTGACCTCCAAGCTCGCCGCGGCGCAGGCAAGAGCGAGGGA
CAGCGAAGAGGAGAAGAAGAAGACGACGGCCGAACAGCTAGACAAGGCACGGCGAGAGACGGAGCGAGCCAAGGCGAGCG
CACGATCGATGCAGGAGGAAGTCGCCGCGGGCAGGGAAGACACGCGCGTGGCTAGGGTGGCGGTCCAGGCCAGGGAGGCG
CGGCTGAAGGCCATGTCGCGGGAGGTGCTCGCCGCGAAGGCGTCGGCGGTGACCGCCGCGGCCGGTGCAGGAGCAGCACC
ACCGCGTCGCCCATGGACTCGCCCAGCAGGAACCGAGGCAAC-GGCGTGGCTGGAAGGTCGCAAGCACACCGTCATGGCC
AGCAACAACTCCTCGCCGATGTCCTAGGCCGCCGACTGGTGCGATGGTGAAGCTCACGTGCTTCCCTCCCATGCACTGAA
AGTGTTTGTTAAAATGCCAGAGAGAGAG--GAGGAAGCTCGTTAGCCCTGACGGGAGGGCCCCACTTGTCATAAACGTGT
TTC--AATCTTCTAAACCGATCATTTTCCGAAAGTGGTTGTTTCTTACCACGAGTTAGTAAAAAAGTGATAGTTTTTGGC
ACAAATTTGTAAAGTGGTAGTTTCTAGGCACGTTTCCATGAAATGTGGTAGTTTTTGGTTAAATACTCG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>chr3A_1
CTAGCGTCCATCCCGTCGCTGGAGGAGGAACTGAGTCGGGTGACCTCCAAGCTCGCCGCGGCGCAGGCAAGAGCGAGGGA
CAGCGAAGAGGAGAAGAAGAAGACGACGGCCGAACAGCTAGACAAGGCACGGCGAGAGACGGAGCGAGCCAAGGCGAGCG
CACGATCGATGCAGGAGGAAGTCGCCGCGGGCAGGGAAGACACGCGCGTGGCTAGGGTGGCGGTCCAGGCCAGGGAGGCG
CGGCTGAAGGCCATGTCGCGGGAGGTGCTCGCCGCGAAGGCGTCGGCGGAGACCGCCGCGGCCGGTGCAGGAGCAGCACC
ACCGCGCCGCCCATGGACTCGCCCAGCAGGAACCGAGGCAGC-GGCGTGGCTGGAAGGTCGCAAGCACACCGTCATGGCC
AGCAACAACTCCTCGCCGATGTCCTAGGCCGCCGACTGGTGCCATGGTGAAACTCACGTGCTTCCCTCCCATGCACTGAA
AGTGTTTGTTAAAATGCCAGAGAGAGAGAGGAGGAAGCTCGTTAGCCCTGACGGGAGGGCCCCACTTGTCATAAACGTGT
TTC--AATCTTCTAAACCGATCATTTTCCGAAAGTGGTAGTTTCTTACCACGGGTTAGTAAAAAA-TGGTAGTTTTTGGC
ACAAATTTGTAAAGTGGTAGTTTCTAGGCACGTTTCCATGAAATGTGGTAGTTTTTGGTTAAATACTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>chr1B_4
---GCGTCCATCCTGTCGCTGGAGGAGGAGCTGAGTCGGGTGACCTCCAAATTCGCCGCGGCGCAATTAAGAGCGAGGGA
CAACGAAGAGGAGAAGAAGAAGACGACGGCCGAACAACTAGAAAAGGCACGGCGAGAACCGTTGCGAGCCAAGGCGAGCG
CACGGGCGATGCAGGAGGAAGTCGCCGCGGGCAGGGAAGACGCGCGCGTGGCCAGGGCCGCGGTTCGGGCCATGGGGGCA
CGGCTCGAAGCCGTGTCGCGGGAGGTGCTCGCCGCGAAGGCGTCAACGGAGACCGCCGCGGCCGGTGCAGGAGTAGCACC
ACCGCGCCACCCATGGACTCGCCTAGCAGGAACCGAGGCAGC-G-CGTCGCTGCAGGGTCGCAACCACACCGTCATGGCC
AACAACCACACCTCGCTGATGTCCTCGGCCGCCGACTGGTGCGATGGTGAAGCTCACCTGCTTCCCTCCCATGCACTGAA
AGTGTTTGTTAAAATGCCAGAGAGAG-GAGGAGGAACCTCGTCAGCATTGACGGATGGGCCACACTTGTCATAAACGTGT
TTA--AATCTTCTAAACCGTACATTTTCCAAAAGTGGTAGTTTCTTGCTACGGGTTGGTAAAGAA-TGATAGTTTTTCGC
ACAAATTTGTAAAGTGGTAGTTTTTGAGCACGTTTCCATAAAATGTGGTAGTTTTTGGTTAAATACTCG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>chr7A_4
---GCGTCCATCCCGTCGCTGGAGGAGGAGTTGAGCAGGGTGACCTCCGAGCTCGCCGCAACGCAGGCAAGAGCGAGGGG
CAGCGAAGAGC-GAAGAAGAAGAAGACGGCTAAACAACTAGACGAGGCACGACGAGAGGCGGAGCGAGCCAAGGCGAGTG
CACGGGCGACGCAGGAGGAAGCCACCGCGGGCAGGGAAGACACGCACGTGGCCAGGGCCGCTGTCCAGGCCATGGTGGCG
CGGCTAGAGGCGGTGTTGTGGGAGGTGCTTGCCATGAAGGTGTCGGCGGAGACCGCCGTGGTCGGTGCAGGAGCAGCACC
ACCGCGCCGCCCATGGACTCGCCCAGCAGGAACCGAGGCAGC-GGCGTCGATGCAGGGTCGCAACCACACCGTCATGGCC
AGCAACCACACCTCGCCGGTGTCCTCAGCCACCTACTAGTGCGATGGTGAAGCTCACCTGCTTCCCTCCCTTGCACTGAA
AGTGTT-GTTAAAATGCCACAGAGAGAG--GAGGAAGCTCGTCAGCCCTGAC--GAGGGGCCCATTTGTCATAAACATGT
TTA--TATCTTCTAAACTGGTCA-TTTCCCGAAGTGGTAGTTTTTTGCCACGGGTTTGTAAAAAAGTGATAGTTTTTGGC
ACAAATTTATAAAGTGGTAGTTTTTGGACACATTTTCATGAAATGTGGTAGTTTTTGATTAAATACTCG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------
>chr1B_187
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GCGAGCAGGGAAGACGCGCGCTTGGCCAGGGCCGCGGTCCAGGCCATGGAGGCG
CGGCTCGAGGCCGTGTCGCGGGAGATGCTCGCCGCGAAGGCGTCAGTGGAGACCGCCGCGGCAGGTGCAGGAGCAGCACC
ACCGCGCCGCCCATGGACTCGCCCAACAGGAACCGAGGCAGCGG-CGTCGCTGCAGGGTCGCAACCACACCGTCATGGCC
AGCAACCACACCTCGCTGATGTCCTCGGCCGCCGACTGGTGCGATGGTGAAGCTCACCTGCTTCCCTCCCATGCACTGAA
AGTATTTGTTAAAATGCCAGAGAAAG-GAGGAGGAACCTCGTCAGCCCTGACGGGTGGGCCCCACATGTCATAAACGTGT
TTATAAATCTTCTAAACCGGTCATTTTCTGAAAGTGGTAGTTTCTTGCCACGGGTTGATAAAAAA-TGATAGTTTTTTAT
ATGAATTTGTAAAGTGGTAGTTTCTGAACACGTTTTCATGAAATATGGTAGTTTTTG-TTAAATACTCTGCTG-------
--------------------------------------------------------------------------------
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-------
>chr2A_747
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAACAAATAAATATCGGAAGCGGACAAAGCGAGGCGGGACCGGGCC
GGACCCGGCGCGCAGCCGCGGAATATAATCCTGTGCGCTGCGCGGTGCGGCTTATCTGATGTGAGCGCAGCCCGTAGGCC
GTAGTGGATTGCCACTTCCTTCCTT-GCCTCCTTGCCTTTTCTCTCTCGGGACAGACAGCCTGTGATTTCCTTCTTGTTG
TTGTTGTTCTTGTTGCCGGAG------GAGG---------TAGAGGAGGGAGGCGGCGGCGGCATGGACGTGGAGATCCA
GCGGCCGCGGGAGGTGGGCAGCTGCAGGGTGGTCAAGGTGGACAAGGAGGCCGCCTGGGAGCTCTTCACCACCCAGGCCG
CCAACGAAGGCCGCACTGTGCGTCCCCGGTTCAT-CTTTCCTCCTCCTCCTCCTCCTTCTTCCCCCAACTCT--TTGCCG
CCCTTCTCTCGGCCCAATTTCTTGTT------------CATACTCCGTTCAATTCTCTGAGCCCGGATTCTCGGCGTTTT
CGCGCCGTGGATCCTCGAAATCCCGCATTTATAGCCGGAGATCTTGCGGCATAATTAACTGCCTTTGCGTG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTCCATCCTGTTCTTCTGCTGCT
CGTGTGCCTTTTACATACAG-----AAAACAAAAAATCCTGCAAATTGATGAGGAAT------GCATGGGGCTTATGATT
ACT----GTGTTCTGCACTCAAATTGCCTTTCTTTTACGTAGACTTAAAAGGTGGCTTTGGTTACAT----TATCCCTCC
ATGTTGTGCAGGTCGCCGCTCACTTTGGGGCGTCGTGGTGCGTCACGTCCCTGTCCATGAACTACAAGTTCGAGGAGCTC
GCCCAGACCCACCCAGACATGCTCTTCCTCTTCGTCGACGTCGATGATGTCCCGGTAACCAATCATTCATTCATTCCCCT
AATTATTCTCCCCTCATGGCTTATTATTGTTTATAGT---------ATCACATCATTCTTCGACAACAAGATTTAGACTC
AACTTTCTTCAGAG-AAACAGAGAGGGGCTACCTACTCACTCAATCAAATGATAAATTGACTCGACGTTTTGTCAATTAT
CTCAAAAGATTATGGCATGCTCGTTTCTCAACAAACAAGAATTACTCAGCTTTGTAGTCTATTCTGAACATGCGGCCTAG
TTAAGCTAAGATGCAACGACGTG---------TATATATATGCAGGGCGTGTCTTCCAAGCTGGGGGTGAAGGCCATGCC
CACCTTCTTCCTCATCAAGGGCAAGGAGGTGGTGAAGAAGATCGTCGGTGCCAACCCGGACGAGCTCCACAAGATGGTGG
ACGCCTCCGACGACGATTCGCTCGGCTCTGCTGTGACCACTCTCCCTGACATAGTCATCGAAAAATAGTTGTTTTG-C-G
TCTCTGAATCTTCTCCGAGTGCTGTTCGCTCGGTTCCG------GTGTGTGTGTGTGTGTGTGACTCTGAATCTTATCTG
ATCTGATCTGATGCGTGTGCCCCTTCCCCGCTAGAGGAGAGTAGGGCGTGTGACTTGGCTACTGGCTAAGGTTAATTGTT
GTTGATTAGTAGTACATGCGTGTGTGCTTGTTTTTGGGTTGAAAATATGATGGTTCAGTGT-ACTGCGCGCACACTTGCC
CGTTAATACAGTTGTGTGTGTGTGACTGTCTGACAGGTGCTTGCTCTTCTTTGCTCCC---------CTTGTT-------
--------------------------------------------------------------------------------
------ACCAGTGAGCTGAGAGTTCTCTCTGGGGTGATATTTGCGG-------------------------------CAC
CACAAAAGTGCAGATAC----CCAGATGATGTGGTTATTATACTGAACTTTCTCTGATTATTTAAGCAGCTGCTACTGCT
ATCTTGTTAGCTACTCCCTCCGTTTTGAATTACTTGCCACAGGTAT----------GGATGTATCTAGATGTATTTTAGT
TTTAGATCGGCGAG-----------------------TAATTTGGAACGGAGGGAGTATGTGCCAATGTGGGTGGGTAGG
TAGGATCATATTATCGATCGATCTCGGTGTTGGTACAAGTGCATCTGAATCAGTAT---TTTTTTTAGG---GGTGCGAC
TGAATCAGTAGGCAGGCAGATTCCCACCGAACCAAACCACCTTGGAATGAACAAAACTGCAAGCCTGTTGCTGGCCCAGC
G------------CATCATGTGACCAGATCTCCAGACCAGACGAGCCACATGTCGGATTCAGCTCAGTGGTGCAGCCTGC
AGATACTCTAGTACTATCATTCCAAAGTAAAAGGGCTTATATTAGAGAAAGCCAAAAGAGGATACATTATTGGAGAGACT
TTTTAT-AACTGTGGTACACACCACACAGTGA------------------------------------------------
-------
>chr2D_776
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CGAGGCGGGACCGGGCC
GGACCCGGCGCGCACCCGCAGAATATAATCCTG-----TGCGCGGAGCGGCTTATCTGATGTGAGCGCAGC-------CC
GTAGTGGATTGCCACTTCCTTCCTT-GCCT--------TTTCTCTCTCGGGGCAGACAGGCTGTGATTTTCTTCTTGT--
-TGTTGTTCTCCTTGCCGGAGAAGGAGGAGGAAGAGGAGATAGACTAGGGAGGCGGC---GGCATGGACGCGGAGATCCA
GCGGCCGCGGGAGGTGGGCAGCTGCAGGGTGGTCAAGGTGGACAAGGAGGCCGCCTGGGACCTCTTCACCACCCAGGCCG
CCAACGAAGGCCGCACTGTGCGTCCTCTTC---T-CCTCTCCCCCCCCTCTTCTTCTTCTTCTTCTTCTTCT--T-----
--CTTCTTCTGGTACAATTTCGTGTT------------GATTCTCCAAGG------------CCGGATTCTCCGCGTCTT
CATGCCGTGGATCCTCGAAATCCCACATTTGTAGCCGGAGATCTTCCGCCGTAATTAACCGCCTTTGCGTGTTTGAGCCC
CCCTTATTAAGCAACTAGGAGAAACTTTTTCCTGTCCGGCTTGCCTGCTTCTTCATGCTCCCATCCGTGCTCTCACTTCA
TCCTATAGCTGCACTTCATCCTATAGCTGTCTTTTTTTCTTTTACCTTTTTAATCTAATCATCTCCCCCTAATTTTAAGT
TTAAGGGGATGGGCACGGATGGGCACACGCGCGAGGAGCTGGCAAGTCTCGTCCATGTTCCATCCTCTTCTTCTGCTGCC
TGCTTGTCTTTTACAG--ATGCAGAAAAAAAAATAGTACTGTTAATTGATGAGAAAATGCATGGCATGGGCCTGATGATT
ACTTATTGTGTTCTGGACTCAGAGTGCCGTTTTTTCATGTCGACTTCACGGGTGACTTTGGTTACAT----TATCCCTCC
ATGTTGTGCAGGTCGCTGCTCACTTTGGGGCGTCTTGGTGCGTCACGTCCCTGTCCATGAACTACAAGTTCGAGGAGCTC
GCCCAGACCCACCCCGACATGCTCTTCCTCTTCGTCGACGTCGATGATGTCCCGGTAACCAGTCATTCATTCATTCCCCT
AATTATTCTCGCATCATGGCTTATTATTGTTTATATGCTTCAAAACATCCCATCATTCTTCCACAACAAGATTTAGACTA
AACTTTCTTCAGACTAAACAGAGAG-------------------------------------------------------
--------------------------------------------------------------------------------
----------ACGCCATGATATGTTT------------TATGCAGGGCGTGTCTTCCAAGCTGGGGGTGAAGGCCATGCC
CACCTTCTTCCTCATCAAGGGCAAGGAGGTGGTGAAGAAGATCGTCGGCGCCAACTCGGACGAGCTCCACAAGATGGTGG
ACGCCTCCGACGACGATTCGCTCGGCTCCGCTGTCACCACTCTCCCTGACATAGTCATCGAAAAATAGCCGTTTTGCC-G
TCTCTGAATCTTCTCCGAGTGCTGTTCGCTTGGTTCCG--------------GTGTGTGTGTGACTCTGAATCTTATCTG
ATCTGATCTGATGTGTGTGCCCCTT-CCCGCTAGAGGAGAGTAGGGCGTGTGACTTGGCTGCTGGTTAAGGTTATTAATT
GTTGTCGATTAGTGCATGCGTGTGTTCTTGTTTTTGGGTTGAAAATATGATGGTTCAGTGT-ACTGTTCTCACACTTGCC
CGTTAATACAGTTGTGTGTGTG--ACTGTCTGACAGGTACTTGCTCTTCTTTGCTTCC---------ATTGTTACATCTT
ACTCCCTCTGTAAACTAATATAAGAGCGTTTAGATTACTATTTTAATGATGTAAACGCTCTTATATTAGTTTGCAGAGGG
AGTACTACATGTGAGATGAGAGTTCTCTCTGGGGTGAACTAATAAAGGGGGTAAAAACGATGTTATCTCTGCTGCATCTC
CACAAAAGTGCAGATACAAAGCCAGATGATT--------ATACTGCACTTTCACTGATTATGCAATTAGCTGCTACTGCT
ATCTTGTTAGCTA-------------------------------------------------------------------
------------------------------------------------------------------TGTGGGTGGGTAGG
TAGTATCATATA----ATGGATCTCGTTGTTGGCACAGGTGCATCTGAATCAGTATAATTTTTTTCAAG---GGTGCATC
TGAATCAGTAG----GCAGATTCCCACTGAACCTAACCACCTTGGAATGAACAAATCTGCAAGCCTGTTATTGGACCAGT
GCATCTCTGATGCCATCATGTGACCAGATCCCCAGACCAG-----CCACGTGTTGGATTCAGCTCCGTGCTGCGGCCAGC
GGGTACTCAAT----CA---TCCAAAGTAAAAAGGCTTAT-T---AGAAAACCAAAAGAGGATGCATTATTGGAGAGACT
TTTTATCAACTGTGCTACACACCACACAGTGA------------------------------------------------
-------
>SNPs
------------------------------------S-------------------------------------------
--S-------------------------S---------------------------------------------------
--S--S----------------------------------------S-----------------------S---------
------------------------------------------------S-----------S--S----------------
------S---------------------------------------S--S------------S-----------------
----S---------------------------------------S-----------------------------------
---------------------------------------------------S----------------------------
-----------S------------------------S-------------------------------------------
-S---S---------------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----S--------------------------
S---------------S----------------------------------------------------S-S-SSSS---
-------------------------S--------------------------------------------------S---
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------SSS-S--------------------------------S---SSS------
-----------S--------------SSSSSSSSSSSS-------------------------------------S----
----------S-----S-----------------S-----------S------------------S--------------
---------------------S-------------SSSSSSSSSSSSSSS-S----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------S--S-------S---S---S-------------------------------S-----------
-----S---------------------S---------------------------------------SSSS-------S-
-------------------------------S------------------------------------------------
---------------------------------------------------------------------S----------
-------------S--------S------------S--------S-----------------------------------
---------------S----------------------------------------------------S-------S---
-------------------------------S-------------S--SS------S---S----S------S-------
------SS-----S------------SSSSSS-------S--------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------S---------------------------------------S-
------------S-------------------------SSSSSS------------------------------S-----
----------------------------------------------------------------------S---------
--------------S--------------S----S------S---S---------------S----------------S-
-------------------------------------------S--------------SSSSSSSSS---SS--------
--------------------------------------------------------------------------------
---------------------S--S--------S--------------S--SS----------S---------S------
----------------------------------------------------S---------------------------
-----------------------SSS---S------S--SSSSS--SSSSSSSSSS------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S-S------------S---SSSSSS-S----------
---------------------------------------------------------------S--S--SSS--------
--------------------------------------------------------------S---S-------------
------------------------------------------S-------------------------------------
----SSS-SSSSSSS--------------------SSS-SS------------------------------------SSS
----S---SS----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_727
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------CGCTGCAACTAGG
TCATTGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_2153
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TGGCCTAG
TTAAGCGGAGAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_1192
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CTTCTTCTTCCCCCAGCTCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------
>reverse_3184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------CTTTGGGGAGGTGCATC
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
