>input_sequence_58656
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----------------------------------------------------ATGGCCAGGCGCGTGCCAGCAGCCAGCC
CGTGGGCCTTCCTCCCGTCGGATCTGCTCCTCGACATCTCCGGCCACTTGCACGACGCTGGCGACTTCGTCCG-CTTCCA
CGCCGTCTGCAAGCCATGGCG---CGACACGGCGGGGGCGACTCGCCCCATATTCCTGCCATGGG--------TTATCGC
GCCGGGAGACGATGTGG---GCATCATCCGGCAATCCACCGTCGACTTTCGAGGTATCTACTCCAAGGCCTCGAGCAACC
ATGGCTATGTTGCCATTGTGGAGCCGCCGGGCGCACCATCTAACACCACCAGGAGGAACTGGGTGGTTGCCGCAGATGGC
ACGGCAGCCTCGCTCTTCGTCGCGCATCCTGAGCCAAGACTCATCCAACTTTTCACTGGAAAGGTCACCCCCTTGCCTCC
TTTCCCACTTGAGCAGGTGATGGAGTATCCCCGCGGCATTGTTTACGCTGATGGCACCATTTTTCTGTACCAATTTAATT
ACGAACAATGCCAGGATCATCGTTTTGATAAGACGCTCGCCTTCACGGTGTCCATCCTGCGCCCAGGCAATGTGACTTGG
GAAACCATGAAGAAAAGGTTGAATGTACTTATAAGGAACTGTTGTAGCGCTGCATATCACAACGGCGAAATCCTAGTTTT
CGTGGGCGCCAACATATGGTGTTTCGTAACGCTGAATTTCGAAGCCAACGGCGACAACATGGGTGGAATGCTCGAGGAGC
CGTGGAATAGAGTTTCCACCTATGTCTTGGACTCTCGTGGCGAGCTATTGATGGCGTCCATCTGGGTGGATGAGTCATTG
CAGTGTCACGACAACCACCACCAAGTGCTATCAGTGACACTGAAAGAAGTGGAAGGCAGCAGCTGGAAGCGATGGCTAAG
GAAGGACGGCCGGAGCTTGGGTGATCGATTACTGTTTCTCGGATCTCCTGCCAGCTTTACCATGGACGCTGCACAACTAG
GCACGAGCGGCGGGTATGTCTACTTCCCCTTTAGACGCGGCATGTTCTGTTACAATCTTGCCAACGGCATGGCCAAGCGT
GTGAAGCGGCCTCGTTCTGAATGGCGCGTCGAAGACCTGTGCGTGTGGCTTCAGCCCCAGCCAGCCATTGCTCCAATCCA
GGAAATCAAAGAAAGCATCAACGGTGCGAATGAGTAA-------------------------------------------
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>chr2D_1_TraesCS2D01G009300
CAACGTATTCATGTGCGACTGAGTTGTCTGGCTATCCTGAGATCTGCCGTGTAAGGGGCCTCCCCTCACTATCTTGTATC
GTAAGTCAGGCGAGAGCCTGTTCAAGAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAACATAATTTCGAGAGCGTCCTCATGTCCCGCACCCTCTACATGGTCTCCAACCCATCG
AGCACGATCGCCAGCTTGGCCTCGTCGCCGTGGACCATGCGGAGGAGGCGATCGTTGCTCGGGCGGTGGAGAGGGCGACG
AGGTCGATACGACCAGAGGTCGTCGATGAACCGCTGGGAAACCAGATGCAACCGTTGGCCATCGTCCGTGACCTTGATCA
ATGGGAGCCCTGCCGCCGTTGCAGCCTCGGCCGTCGCTCTGAGCCTGGAAACCCCGACCTGGGCCTCCGGCATGTCCTCC
ATGGCGTTAGCTAGGGCTTGATGGTGCTAGTGGTCGTACGTATCCGGCCGGCGACTAGAAGATCGATACTTATGGCTTCC
CCAAAACCTTACGTGTGGGATGTGGACGATTAGAGCGTCTCCGGCTCGGACTTGTGGCCGATCGCCCGATCGTAACCGAT
TTTGCTTGGTTCAACT-AACTAGTCGTGACGTACACGCGTTAACATA-----------CGCGTGAGCACCTGAGTTGCAT
ATATAGCTCGAAATAGGAGATTGTAGGGCTCCGGCATATGGCAACTTCGGTCATGGCCAGGCGCGTGCCAGCAGCCAGCC
CGTGGGCCTTCCTCCCGTCGGATCTGCTCCTCGACATCTCCGGCCACTTGCACGACGCTGGCGACTTCGTCCG-CTTCCA
CGCCGTCTGCAAGCCATGGCG---CGACACGGCGGGGGCGACTCGCCCCATATTCCTGCCATGGG--------TTATCGC
GCCGGGAGACGATGTGG---GCATCATCCGGCAATCCACCGTCGACTTTCGAGGTATCTACTCCAAGGCCTCGAGCAACC
ATGGCTATGTTGCCATTGTGGAGCCGCCGGGCGCACCATCTAACACCACCAGGAGGAACTGGGTGGTTGCCGCAGATGGC
ACGGCAGCCTCGCTCTTCGTCGCGCATCCTGAGCCAAGACTCATCCAACTTTTCACTGGAAAGGTCACCCCCTTGCCTCC
TTTCCCACTTGAGCAGGTGATGGAGTATCCCCGCGGCATTGTTTACGCTGATGGCACCATTTTTCTGTACCAATTTAATT
ACGAACAATGCCAGGATCATCGTTTTGATAAGACGCTCGCCTTCACGGTGTCCATCCTGCGCCCAGGCAATGTGACTTGG
GAAACCATGAAGAAAAGGTTGAATGTACTTATAAGGAACTGTTGTAGCGCTGCATATCACAACGGCGAAATCCTAGTTTT
CGTGGGCGCCAACATATGGTGTTTCGTAACGCTGAATTTCGAAGCCAACGGCGACAACATGGGTGGAATGCTCGAGGAGC
CGTGGAATAGAGTTTCCACCTATGTCTTGGACTCTCGTGGCGAGCTATTGATGGCGTCCATCTGGGTGGATGAGTCATTG
CAGTGTCACGACAACCACCACCAAGTGCTATCAGTGACACTGAAAGAAGTGGAAGGCAGCAGCTGGAAGCGATGGCTAAG
GAAGGACGGCCGGAGCTTGGGTGATCGATTACTGTTTCTCGGATCTCCTGCCAGCTTTACCATGGACGCTGCACAACTAG
GCACGAGCGGCGGGTATGTCTACTTCCCCTTTAGACGCGGCATGTTCTGTTACAATCTTGCCAACGGCATGGCCAAGCGT
GTGAAGCGGCCTCGTTCTGAATGGCGCGTCGAAGACCTGTGCGTGTGGCTTCAGCCCCAGCCAGCCATTGCTCCAATCCA
GGAAATCAAAGAAAGCATCAACGGTGCGAATGAGTAAAGAATTGTATCTTAATTAGCTCAAGTTTTATTTGTCTAAGAAA
TAATTTGACGCCAAACGTTCCTAATTTAGTGTGGTAATCAGTTGCTCTGCTTATATGTTCCAAGCTGAAGAAGAACCGAG
TCTTCAAGCACACCTCCCTTGCGACGTCGGTGTCGTGTCATCCACAAGATACGCGCCCTCTGCCACGAGTTTGGTGTGGT
GGGTTATGGTATTCTAGCGAGAAATTATCCCATAGGAGGATGGTGGGTCTGGTTCCTTCTGGCTTGTGTGGTCTTAATCC
TTGTAATTGCAACATCTTCTCCTTACATAGACACGCAGATCTCTTGTGGGTACTCAGAAAAAGGAATTGAAGGTTCGATT
CAAAGAAATTGAGAAAAAGGTGCAGATGTTGATGATTTGTTAGAATTCCAAGTTAACATTGCCTACTAATTTGTTACCAC
AGTTGAACTCATTTCCAAAAAATACTGATATGTCAACGACTGTCTAGTCGAGTATATGTATCATCCAGCATCCATATCCC
CTACGCCATCTACACTGTTTAACAAGCAGTAGGTATATAGAAACACTTTCAGGTAACAAAAAACCTAGGCATGATCAACT
ACCTACGCCACAGGATAAA-TAATACACCCCCTAAAAATTTACACGAGCCTTAAGGTTACATAAAAAAAGAGGGTATTGT
CATACATTTACGATCAACTATTTATAATTCATATTCTTCCAATGGATCAAATAAGAGATCGGAACAATCTAATTTTTTTT
TATTGAAGAGGTAGCTAATTCAAAACTACACCTTTTAATCCGCATCGAAATCTGTAAACTTTTCTTGGATGGTGGACCGA
AGTAAAGCTCGAAAGGAAATTCAAAATGAAACCACTATTAGACAATAAGGCTATATATTATTTGATTTGGACGATCATGA
TCATTTCATCAGATAAGTCCGTATAACTCTGGCATGCACTCACGCATGCCTTTAGGGTCTCGTCTAGGGGCACTTGAG
>chr1B_751
TGGTGGT-------------------------------------------------------------------------
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--------------------------------------CGTATCCGGCCGACGATTAGA----CGATACTTATGGCTTCC
ATAAAGATTTATGTGTGGA------ACGATCGGAGCGTCTCCGGCTCGGACTCATGGAATCTAATAATCATCTTAAGCGT
CTTGCTTGGTTCATATCAACTAGTCGTGACGTACATGGGTTGTACGTACATGCGTGGCCACGCGGACACGCCAGTTGCAT
AGAACCACGGGAGTTGCAC----TAGGGCTCCGGG-------AACTTTGGCCATGGCCAGGCACGCGCAGCC-GCCAGCC
CGTGGGCCTTCCTCCCATCGGATCTGCTCCTCGACATCTCCGGATGCTTGCACGATGTCAGTGACTTCATCCGCCTTCCA
TGCTGTCTGCAAGTCACGGCGTGACGACACAGCGGGGGCGACTCGCCCCGTGTTCCTGCCCTGGGTTATCGGCTTATCGC
GCCAGGAGATGACGTGGGCGGCATCATCTGGCAATCCACCGTCGACTTTTGAGGTATCTACTCCAAGGCCTCGAGCAACC
ATGGCTATGTTGCCATCGCGGAGCCGCCGGGTGCACCACCTAACACCACCGGGAGGAACT--------------------
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>chr2A_2588
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------------------------------------------------------AACATTGCCTACTAATTTGTTACCAC
AGTTGAACTCATTTCCAAAAAATACTGGTATGTCAACGACTGTCTAGTCGAGCATATGTATCATCCATCGGCCGTATCCC
CTACGCCATGTACACTGTTTAACGAGCAATAGATATATAGAAACGCTGTCAGGTAACAAAAAACCTAAGCATGATCAACT
ACATACACCACAGGATAAAATAATACACCCCCTAAAAATTTGCCTGAATCTTAAGGTTAC--AAAAAAAAAGGGTATTCT
CATACATTTACGATCAACTATT-ATAATTCGTATTCTTCCAACGGATCAAATAAGAGATCAGAACAATCTAATATTTTTT
ATCAAAAGGGGTAGCT---TCAAAACTACACCTTTTATTCCGCATCGAAATCTGTAAACTTATCTAGGATGGTGGACCGA
AGCAAAGCTCGAAAGGAAATTAAAAAAGAAATCACTATTAAACAATAAGGCTATATATGATTTTATTTGGACGATCATGA
TCATTTCATCGGATAAGTCCGTATAACTCTGGCATGCACTCACGCAT-CCTTTAGGGTCTAGTCTAGGGGCACTTGAG
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---S----SSSS-----------------
SS---SSS---S------SSSSSSS-----SS--------------------SS---SSSS-SSSSSSSSSS-S-SSSS-
S------------SS--------------------S-S---SSSSSS------------S--S-SS---SSS--------
-S-SSSSSS-S-S-S-S-SSSSS-----------SSSSSSSS-----S--S-----------S--S--SSS-S-------
----------------S--------------------------SSS---------S-SSS-S------S-----------
S--S---------S--S-------------S------------------S-S--------S-------------------
---S-----S--S---------------S--------------------S------------------------------
----------------S-S------------S------S-----------S---------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
---------------------------S------------------------S--------------S-SS--S------
---------S-------------S----S---S-----------S--S-------------------S------------
--S---S----------------------------------S-SS--SS-----------SS-------S--------S-
----------------------S-------S-----------S-----------------S------------S------
SSSSS---S-------SSS------------------S-----------------------S---S--------------
--S------------------S----S----S--------S-----------------S----S----------------
----------S------------------------------------S------------S-----------------
>forward_735
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---------------------------------------------------------------------------CCTCC
ATGGCGTTAGCTAGG-----------------------------------------------------------------
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>reverse_2433
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--------------------------------TAGGAGGATGGTGGGTCTGG----------------------------
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