>input_sequence_58489
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-------------------------------------------------------------ATGGCCGTGGTGGTGCAGT
TTCTGGTTAGAAAGTTCGTTGATAGCCTTGCGGAGGAGGGAGACGCGGAGCTCCCTTTCAGCTCCCACTTCTACGACATG
AGGGCCGGGTTGGAGAAGGCAGCCACTTCTTCCACCAACACCGATGAGCTCCGAGAGTGCATGTACGAACTCAATAACCT
GCTCTCGCAGTGCCGCATGCTCACCAACCGGCCAATCACGCGGAGCTGCTACTTCTCCCCCTCCGAAGCGTGGCTTTCCA
ACAAGGTCAAGCAGCGGGTGATCGCCGTGAAGCGCAGAGTCCTGCAATGTGTCCAGAACGACGACCCCAACGGCGATGCT
ACAGCCTCGCCGGAGGAGAATGCCACCACCGCTGGGTTCAGCCGGTGGAGTACTTCTTGGGTTGAGCAGAGCAGGGTCTA
CGGGTTCGACCAACAGCTCGCGGAGCTAGAGTCCAGGGCGTTCGGGAACAGCAGCCCCGGACGACTTACCGGCGTCGGCA
TCGTCGGCATGGGCGGCATCGGGAAGACTGCACTCGCGCAGCTCGTGTTCAACAGCCCGTTGGCCAGGCGCCGCTTCTTC
CCCAGGATCTGGGTGTGCCTGTCGCGCACCTCTTGCATTGGCAAGGATGTGCGCAAGGAAGTCTTGCAAAGCATACTTAT
GGCCCTCGGACTCGAAGAGGAGTTCATATTGGCCATTGATAGCCTGGGAGACCTGGAGTTAGCTGTCCATGAGCAGCTCA
AGGGGAAGCGGTACCTCATAGTATTCGATGATGTCTGGAACATCGACGACTGGTACGCCAACGTTGCAGGCCATGCAAAT
GCCTTGTCGAGGGGCGAACAATTGCCGAACGGCCTTGTGCTCGGGTTGCCCAAAGAGAGAGGTGGAGTTGTGGTCGTTAC
CAGCCGGCAGGAGCAGGCAGCAGAGATGATGGTGGGGAAGGGTAGTGTGTACCGTGTGCAGCCACTGGCCGACAGAGAGA
GCGCCTGGGCGATCTTTATGGATGCACTGAATAAGGAAAGACAGCCAATCGATCTCGCAGCTATTAACGACCTGAAAGAG
GAAATTCTTCAGACCTGTGGTGGGCTACCGTCAATGGCCAAGGCAATGGCAGACATCTTCGCAAAAAGTCTAACGTTACC
AGCATCAACTTCTAGCCAGGAACTTAAGCTTGAGTAG-------------------------------------------
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---------------------------------------------------
>chr3D_1_TraesCS3D01G322300
GCACGCTGAGCAAGGCGGAGACGTTGCGCTTCCGGATGCCGGCGGAGAAGAGGAGGAACACCTGCAGCGCAAGGCTGGTG
AGCACAAGCACGCGGATTTCCCACTCGTTCCACACAGTGAGTAGGCCTCCCATGGAGTGTGTGCTCATGCCGTTCCCCTC
CATCTCTGCCTTCCACTCCGGCGGCTGGCACTTCTCCAGGATCATCATATCCTAATGCTCGTGGGGAGACTTGGCTCCTG
GTCTTCCATGGGGTCAACCTCACGCGTCATTGGTTTTCTTAATGATTTC-AATGGGACATTACGCGTC--TGGAAGAAGA
AACAAGAGCCA------------------AAGGGCCGTCACTGTCTTGGTCTCTGCGCTCTGCGCCTCATGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTATCCCTTTATTATCCTGTGAATCCATCAATCAACTACTGAA
AAATCCTCCATCAAACTACCTTCTTACGAGCAATTTCTGACCGGAAAAGCCGAAGGGGTCGATGGCCGTGGTGGTGCAGT
TTCTGGTTAGAAAGTTCGTTGATAGCCTTGCGGAGGAGGGAGACGCGGAGCTCCCTTTCAGCTCCCACTTCTACGACATG
AGGGCCGGGTTGGAGAAGGCAGCCACTTCTTCCACCAACACCGATGAGCTCCGAGAGTGCATGTACGAACTCAATAACCT
GCTCTCGCAGTGCCGCATGCTCACCAACCGGCCAATCACGCGGAGCTGCTACTTCTCCCCCTCCGAAGCGTGGCTTTCCA
ACAAGGTCAAGCAGCGGGTGATCGCCGTGAAGCGCAGAGTCCTGCAATGTGTCCAGAACGACGACCCCAACGGCGATGCT
ACAGCCTCGCCGGAGGAGAATGCCACCACCGCTGGGTTCAGCCGGTGGAGTACTTCTTGGGTTGAGCAGAGCAGGGTCTA
CGGGTTCGACCAACAGCTCGCGGAGCTAGAGTCCAGGGCGTTCGGGAACAGCAGCCCCGGACGACTTACCGGCGTCGGCA
TCGTCGGCATGGGCGGCATCGGGAAGACTGCACTCGCGCAGCTCGTGTTCAACAGCCCGTTGGCCAGGCGCCGCTTCTTC
CCCAGGATCTGGGTGTGCCTGTCGCGCACCTCTTGCATTGGCAAGGATGTGCGCAAGGAAGTCTTGCAAAGCATACTTAT
GGCCCTCGGACTCGAAGAGGAGTTCATATTGGCCATTGATAGCCTGGGAGACCTGGAGTTAGCTGTCCATGAGCAGCTCA
AGGGGAAGCGGTACCTCATAGTATTCGATGATGTCTGGAACATCGACGACTGGTACGCCAACGTTGCAGGCCATGCAAAT
GCCTTGTCGAGGGGCGAACAATTGCCGAACGGCCTTGTGCTCGGGTTGCCCAAAGAGAGAGGTGGAGTTGTGGTCGTTAC
CAGCCGGCAGGAGCAGGCAGCAGAGATGATGGTGGGGAAGGGTAGTGTGTACCGTGTGCAGCCACTGGCCGACAGAGAGA
GCGCCTGGGCGATCTTTATGGATGCACTGAATAAGGAAAGACAGCCAATCGATCTCGCAGCTATTAACGACCTGAAAGAG
GAAATTCTTCAGACCTGTGGTGGGCTACCGTCAATGGCCAAGGCAATGGCAGACATCTTCGCAAAAAGTCTAACGTTACC
AGCATCAACTTCTAGCCAGGAACTTAAGCTTGAGTAGTGGAAATGTAAGGC-----AGGCAATATGCCTGTCATGGACCA
AAAAGACACTACATAACAACTGTATACGAATTTTATGGATTTATCACATGAAAGTTATGGCATAAATTCTTATGAATGGC
TGTGAGAAGAAGATCTACACGCATGCTCCCATTTCTCCCTGCAAAATAAGTTTGAACCCCGCGTAGAATTGAATGTTCAG
TGCTTCCGGTTTCCTCATAAACAAAAAGTGCAGGTGTCAGACCTTTATGGCTTTCACAAATATATTATGACAAAAATTCA
AGACAAACATACATTTTGTAGAAAGTTAAAAAGGCTAGTAAATTTTCACTTGAAGGCCGTAACAAACTTCTGCATGACGC
CGTGAAATAACATGTGTGAGAGAGACTGACCATAACTTGCACAACTTTGGTAGAGACTCTGATCAAACTTGCTTTCCATT
AATACATCACTCTTTCCTGACAATGCGCTCACATGAAAAAGCCTGAAAAGAAGAATGATTCGGGAAATCAGTGAAAATGG
ATGAATTACTATTTGTGTTCCTACATCATAAGTTCATAACCATAGGCCACAGATTTGTTTGATGAAGCTCAAATTTATCA
ACATTGTGTAGCTGATAAGCTGTACAACATATGCAATCAAATAATTAAGACAACAAATGGATAACCTGGCTTCGTGCATC
T-----------TC-TTTTTTTCCTTTGTATTTTTGTTTCAACATTGAGGGCAGAAATTGACTTATTACATATG----TA
ATAATGAGAACTCACTTTATTTGGTGCTTTGCTCTACTCTCTGGTTTCCTGGGTATCGTAGTTCATCCACACTCCATCCT
TGTCACAAGGGAAAGATTCTATGTTGCTACATCTGAATACCTCCAGGAAGGTCAGGTTTGGAAACATCTCATTCACCTGG
GTCCATTCTA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------GTACCAAGTCATTCAAGAACTTCAAACGCAATATCTC
AATGTTCCACTGCTCAGACATGCGCTTCTCTCCAAAAGTGCGCAGCATTCC
>chr3B_1
GCACGCTGAGCAAGGCGGAGACGTTGCGCTTCCGGATGCCGGCAGAGAAGAGGAGGAACACCTGCAGCGCGAGGCTGGTG
AGCACAAGCACGCGGATTTCCCACTCGTTCCACACAGTGAGTAGGCTTCCCATGGAGTGTGTGTTCATGCCGCTCCCCTC
CATCTCTGCCTTCCACTCCGGCGGCTGGCACTTCTCCAGGATCAACATATCCTAATGCTCGTGGGGAGACTTGGCTCCTG
GTCTTCCATGGGGTCAACCTCACGCGTCATTGGTTTTCTTAATGATTTC-AATGGGACATGTACGCGTCTTGGAACAAGA
AACAAGAGCCAAAGTTGGCACTAAAAGTTAAGGGCCGTCACTGTCTTGGTCTCTGCGC--CTCATGGTTCAGTTAGCTCC
CCCCC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------TCTTTATCCCTTCATTATCCTGTGAATCCATCAATCAACTACTGAA
AAATCCTCCATCAAACTACCTTCTTACGAGCAATTTCTGACCGGAAAAGCCGAAGGGGTCAATGGCCGTGGTGGTGCAGT
TTCTGGTTAGAAAGTTCGTTGATAGCCTGGCGGAGGAGGGAGCCGCGGAGCTCCCTTTCAGCTCCCACTTCTACGACATG
AGGGCCGGGTTGGAGAAGGCAGCCATTTCTTCCACCAACGCCGATGAGCTCCGAGAGTGCATGTACGAGCTCAATAACCT
GCTCTCGCAGTGCCGCATGCTCAACAACCGGCCAATCCCGCGGAGCTGCTGCTTCTCCCCCTCTGAAGCATGGCTTTCCA
ACAAGGTCAAGCAGCGGGTGATCGCCATGAAGCGCAGAGTCCTGCAATGTGTCCATAACGATGACCCCAACGGCGATGCA
GCAGCCTTGCCGGAGGAGAATGCCACCACTGCTGGGTTCAGTCGGTGGAGTACTTCTTGGGTTGAGCAGAGCAGGATCTA
CGGGTTCGACCAACAGCTCGCGGAGCTAGAGTCCAGGGCGTTCAGGGACAGAAGCCCCGGACGACTTACAGGCGTCGGCA
TCGTCGGCATGGGCGGCATCGGGAAGACTGCACTCGCGCAGCTCGTGTTCAACAGCCCGCTGGCCAGGCGCCGCTTCTTC
CCCAGGATCTGGGTGTGCCTGTCGCGCACCTCTTGCATTGGCAAGGATGTGCGCAAGGAAGTCTTGCAGAGCATACTTAT
GGCCCTCGGACTCGAAGAGGAGTTAATATTGGCCATTGATAGCCTGGGAGACATGGAGTTAGCTGTCCATGAGCAGCTCA
AGGGGAAGCGGTACCTCATAGTATTCGACGATGTCTGGAACGTCGACGACTGGTACGCCGACATTGCAGGCCATGAAAAT
GCCTTGTCGAGGGGCGAACAATTGCAAAATGGCCTTGTGCTCGCGTTGCCCAAAGAGAGAGGTGGAATTGTGATCGTTAC
CAGCCGTCAAGAGCAGGCAGCAGAGATGATGGTGGGGAAGGGTAGTGTGTACCGTGTGAAGCCCCTGGCCGACAGAGAGA
GCGCCTGGGCGATCTTTATGGATGCTCTGAACAAGGAAAGACAGCCGATCGATCTCGCAGCTATTAACAACCTGAAAGAG
GAAATTCTTCAGACCTGTGGTGGGCTACCGTCAATGGCCAAGGCGATGGCAGACATCTTCGCAAAAAGTCTAACGTTACC
AGCATCAACTTCTAGCCAGGAACTTAAGCTTGAGTAGTGGAAATGTAAAGTAGAGTAAGCAATATGCCTATCATAGACCA
AAAAGACACCACATAGCAATTGTATATGAATTTTATGGATTTGCCACATGAAAGTTATGGCACAAATTCTTATGAATGGC
TGTGAGAAGAAGATGGCATGTAT-----CCATTTCTCCCTGCATAATAAGTTTGAACCCCGCATAGAATTGAATGTGCAG
TGCTTCCGGTTTCCTCATAAACAAAAAGTGGACGTGTCAAACCTTTATGGCTTTCACAAATATATTGTGACAA-AATTCA
AGACAAACATACATTTTGTAGAATGTTAAAAAGGCTAGTAAATTTTCACTTGAAGGCCGTAACAAACTTCTGCATGATGC
TTTGAAATAGCATGTGTGAGGGAGACTGACCATAACTTGCACAACTTCGGTAGAGACTCTAATCAAACTTGCTTTCCATT
AATGTATCACTCTCTCCTGACAATGCGCTCACATGAAAAAGCCTGAAAAGGATAATGACTCGGGAAATCAGTGAAAATGG
ATGAATTACTATTTGTGTTCCTACATCACAAGTTCATAACCATAGGCCACAGATTTGTTTGATGAAGCTCAAATTTATCA
ACATTGTGTAGCTGATAAGCTGTACAACATATGCAATCAAATAATTAAGACAACAAATGGATAACCTGGCTTCGTGCATC
TCCATTTTCCCCTC-TTTTTTTCCTTTGTATTTTTGTTTCAACATTGATGGCGGAAATTGACTTATTACATATGTAAATA
ATAATGAGAACTCACTTGATTTGGTGCTTTGTTCTACTCTCTGGTTTCCTGGGTGTCACAGTTCATCCACACTCCATCCT
TGTCACAAGGGAAAGATTCTATGTTGCTGCATCTGAATACCTCCAGGAAGGTCAGGTTCGGAAACATCTCATTCACCTGG
GTCCATTCTA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------GTACCAAGTCATTCAAGAACTTCAAACGCATTATCTC
AATGTTCCACTGCTCGGACATGCTCTTCTCTCCAAAAGTGCGCAGCATTCC
>chr3A_1
GCACGCTGAGCAAGGCGGAGACGTTGCGCTTCCGGATGCCGGCGGAGAAGAGGAGGAACACCTGCAGCGCGAGGCTGGTG
AGCACAAGCACGCGGATTTCCCACTCGTTCCACACAGTGAACAGGCCTCCCATGGATTGTGTGCTCATGCCGTTCCCCTC
CATCTCTGCCTTCCACTCCGGCGGCTGGCACTTCTCCAGGATCATCGTATCCTTATGCTCGTGGGGAGACTTGGCTCCTG
GTCTTCCATGGGGTCAACCTCAGGCGTCATTGGTTTTCTTAATGATTTCAAATGGGACATGTACGCGTCTTGGAAGAAGA
AACAAG--------TTGGCACTATAAGTTAAGGGCCGTCACTGTCTTGGTCTCTGCGCCCCTCATGGTTCAGTTAGCTCC
CCCC----------------------------------------------------------------------------
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----------------------------------TCTTTATCCCTTGATTATCCTGTGAATCCATCAATCAACAACTGAA
AAATCCTCCATCAAACTACCTTCTTACGAGCAATTTCTGACCGGAAAAGCCGAAGGGGTCGATGGCCATGGTGGCGCAGT
TTCTGGTTAGAAAGTTCGTTGATAGCATGGCGGAGGAGGGAGCCGCGGAGCTCCCTTTCAGCTCCCACTTCTACGACATG
AGGGCCGGGTTGGAGAAGGCAGCCATTTCTTCCACCAACGCCGATGAGCTCCGAGAGTGCATGTACGAACTCAATAGCCT
GCTCTCGCAGTGCCGCGTGCTCACCAACCGGCCAAACACGCGGAGCTGCTTCTTCTCCCCCTCCGAAGCGTGGCTTTCCA
ACAAGGTCAAGCAGCGGGTGATCGCCGTGAAGCGCAGAGTCCTGCAATGTGTCCAGAACGACGACCCCAACGGCGATGCT
GCAGCATTGCAGCAGGAGAGCACCACCACCGCCGGGTTCAGCCGCTGGACTACTTCCTGGGTTGAGGAGAGCAGGATCTA
CGGATTCGACCAACAGCTCGCGGAGCTAGAGTCCAGGGCGTTCGGGGACAGCAGCCCCGGACGACTTACAGGCGTCGGCA
TCGTCGGCATGGGCGGCATCGGGAAGACTGCGCTCGCGCAGCTCGTGTTCAACAGCCCGATGGCCAGGCGCCGCTTCTTC
CCCAGGATCTGGGTGTGCCTGTCGCGCACCTCTTGCATTGGCAAGGACGTGCGCAATGAAGTCTTGCAGAGCATACTTAT
GGCCCTCGGACTTGAAGAGGAGTTCATACTGGCCATTGATAGCCTGGGAGACCTGGAGGTAGCTGTCCATGAGCAGCTCA
AGGGGAAGCGGTACCTCATAGTATTCGACGATGTCTGGAACGTCGACGACTGGTACGCCGACATCGCAGGCCATGAAAAT
GCCTTGTCGAGGGGCGAACAATTGCAAAATGGCCTTATGCTTGGGTTGCCCAAAGAGAGAGGTGGAGTTGTGGTCGTTAC
CAGCCGGCAGGAGCAGGCAGCAGAGATGATGGTGAGGAAGGGTAGTGTGTACCGTGTGGAGCCGCTGGCCGACAGAGAGA
GCGCCTGGGCGATCTTTATGGATGCTCTGAACAAGGAAAGACAGCG--TCGATCTCGCAGCTATTAACAACCTGAAAGAG
GAAATTCTTCAGACCTGTGGTGGGCTACCGTCAATGGCCAAGGCAATGGCAGACATCTTCGCAAAAAGTCTAACGTTAGC
ACCATCAACTTCTAGCCAGGAACTTAAGCTTGAGTAGTGGAAATGTAA-----AGTAGGCAATATGCCTGTCATGGACCA
AAAGAAAACTACATAGCAACTGTATATGAATTTTATGGATTTGTCACATGAAAGTTATGGCATAAATTCTTATGAATGGC
TGTGAGAAGAAGATCTACAGGCATGTA-CCATTTCTCCCTGCAAAATAAGTTTGAACCCA-CGTAGAATTGAATGTTCAG
TGCTTCTGGTTTCCTCATAAACAAAATGTGCAGGTGTCAGACCTTTATGGCTTTCACAAATATATTGTGACAAAAATTCA
AGACAAACATACATTGTGCAGAAAGTTAAAAAGGCTGGTAAATTTTCACTTGAAGGCCGTAACAAACTTCTGCATGACGC
CGTGAAATAACATGTGTGAGAGAGACTGACCATAACTTGCACAACTTTGGTAGAGACTCTGATCAAACTTGCTTTCCAAT
A---TATCACTCTCTCCTGACAATGCGCTCACATGAAAAAGCCTGAAAAGAAGAATGAC-----AAATCAGTAAAAATGG
ATGAATTACTA-TTGTGTTCCTACATCATAAGTTCATAACCATAGGCCACATATTTGTTTGATGAAGCTCAAATTTATCA
ACATTCTGTAGCTGATAAGCTGTACAACATATGCAATCAAATAATTAAGACAACAAATGGATAACCTGGCTTTGTGCATC
TCCTTTTTCCACTCTTTTTTTTCCTTTGTATTTTTGTTTCAACATTGAGGGCGGAAATTGACTTATTACATATG----TA
ATAATGAGAACTCACTTGATTTGGTGCTTTGTTCTACTCTCTGGTTTCCTGGGTGTCGTAGTTCATCCACACTCCATCCT
TGTCACAAGGAAAAGATTCTATGTTGCTACATCTGAATACCTCCAGGAAGGTCAGGTTTGGAAACATCTCATTCACCTGG
GTCCATTCTACTCCCTCCATCACACTTTAAAGGGCGTATCTCCAAAACCAATTTTTTTCACAATTAGAGGGAAATAGGGC
GCAGGTCATTAATTAGCCCGCTGAAATTACTCCTTCCGCTTGGTGCGCATGCATGGTGTGAACTGAAACTTTAGGTGGAG
GTGTGAATCGGTTTTGTTTGCATGCATGGCTGTGCGAGGCCTTTTATTGGACGGGGAGATTACTATGCGTTTGTTTAGCG
ATTAATTAGGCACATATCCTTAACTACCGCAGCTCCAGCGCATCATTTATTCCTGCCAATCGCTAGCGACCTTGGGCCCA
GAGAGATGTGAGGTACGCCCTTTAAACTGTGATGGAGGGAGTAGTACCAAGTCATTCAAGAACTTTAAACGCAATATCTC
AATGTTCCACTGCTCGGACATGCTCTTCTCTCCAAAAGTGCTCAGCATTCC
>SNPs
----------------------------------------------------------------------S---------
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------------------------------------------------------------SSSSSSSS------------
----------------------------------------------------------S-SS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------------------------------
--------------------------------------------------------------------------------
----------------------------S-------------S-------------------------------------
-------------------------S-------------S----------------------------------------
--------------------------------------------------S-----------------------------
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S------S-------------------------------------------------------------------S----
----------------------------------------------S----------------------S----------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------S------------S-----------------S--S------------S----
-------------------------SS--S--------------------------------------------------
----------------------------------------------------------S----S----------------
-------------------------S-----S--------------S---------------------S-----------
--------------------------------------------------------------------------------
------------------------------------------------S-S-----------------------------
---------------S----------S---------------S-------------------------------------
-------------------S-----SSS----------------------------------------------------
------------------------------------------------------------------S-------------
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---SS--------S--------------------------------------------S---------------------
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----------------------------------------------------S---------------------------
-----------------S-------------S----------------------S-------------------------
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---------------S-------S---------------------------
>forward_382
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------------------------------------------GTCTTGGTCTCTGCGCTCTG------------------
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---------------------------------------------------
>reverse_1436
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---------------------------------------------------------------------------GTCTA
CGGGTTCGACCAACA-----------------------------------------------------------------
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---------------------------------------------------
>forward_1160
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--------------------AGCCACTTCTTCCACCAACA----------------------------------------
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---------------------------------------------------
>reverse_2654
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-------------TTCCTGACAATGCGCTCACA-----------------------------------------------
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---------------------------------------------------
