>input_sequence_58454
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--------------------------------------------------------------------ATGCATCTCTCC
ACTGACTCTACCAAGCAGTCGCCGACATTCGCCCCTCCTAGTGACCCTATGGCGCATCTCCTCCATGAGAAAAGGTGAGT
GCCCCTGATTTTTCTTACCTTCTCCCTGAGATCCAACTTCCCCAATTTCAGTTTTGTTTATTGATGATTCACTTCTTCTC
TTTAATTTTAGGAACCCTAAATCCAAATTGGCTGAGGGGATTTCTGACTCGATTCTGAGCCGCCTCGCTTCCTCGTCGGT
GCTACCGCTCGATGATGAGGACCTTCTCCAGGAGATCCTCCTCCACCTCCCTCCACAACCATCCTCCCTCCCGCGCGCCT
CGCTTGTTTGCCCATGCCGGCGTAACATCCTTTCCAACCACAAGTTTCTCCGCCGCTTTCGCAAGCATCACCGGAAACCA
CCTCTGCTTGGCTTCTTTGCAAGGTGTTTAATCAGTAAAGCGACCGTCTTCACTTCTGTCCTTAACTCGCCTGACTGCAT
CCCTGCTGGTCGCTTTCTCGTGCCACACAGCCACAACCCGTTCAAGGAGT---------TGCGCTTCATGGGATGCCGCC
ATGGCCTCGCTGTCCTATTCGAAATGTCACTACATTCCCCCATGCCAACGGGTTTGATTGTGTGGGATCCACTCAATGGT
CAACAACACAACCATTTGACAATGCCATCAGGGCTCAATGGTGACAAATGGGAGTGTTGGAATGCCACTGTGTTGTGCAC
TAATGTCGAAGATGGTCATGTGCACGGTGATTGCTTCTCGAGCCC-GTTCAAATTGGTCTTGATCTTCAACAGAGACACA
GATGCTTCAACCTGCGTCTACGAATCGATATCTGGTGTATGGGGAGATATTGTCTCCGTGGAAACCAA-GA-AAGTAATT
TCTCCCTTGAGACCCAGCATTCTGATTGGAAATGTACTTTACTGGTTGCTTGTTGGAGGTGAAGTCCTTGTGCATGATTT
TGAAAGGCAGAGTCTTGGTCTGATTGAGAAGCCAGCAGACACACATAATGGACATGTCGAGCTTTCTTATCATCTCTTAC
GGATAGAGGATAATGGACTTGGTATGGCCATTGT-GTCAGAACTTACAATTAAATTATGGGAGAGGAAATCCAACTGTGA
TGGTGTTG--------------CTGAAGAAAATTGCTCCACTGGATG-GGTTGTTTCCGCAGACAATGCCTAG-------
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--------------------------------------------------------------------
>chr3A_1_TraesCS3A01G075300
TGTTCTTTCAGCTATGATGACAGATATGAAAGAAAATTGGAGCCAATGTAAGCATGAACATGTGAGGCAATACCTGTCAG
AATGAGGATATAGTGAAGCAAATCACCCCAGAGCAAGGTCGTCGGTCATATGAAATTCAGTGGGAGCATCATAGAAAGGA
AAAAAGGACACCCAAGTTGGAGACGGTTTCCTTAAGTCAGAATATTCATGCTTGTCTCGTGAGCAACAAAATCTCGAGGA
TGAGATTTCTTTAAG-GGGGGAGGTTTGTAACACCCTGGATTTTGGCTCTTTCTTTTTCTTTTGATTTTCTGTGGATTTT
GCTTTGGATTTCTTTTTCTGTGGCTCTGTAGTCTGAAAACCGGAGAAGATGACCTCTTCTTCCTTTCCAGAGTGGTTTGT
CATTCTCGAAACCATCCCAAGATCATGTCATTTCCCATCTTGTAGGTCAACACAAGGCCAGTCGACAATGGGGAGGGGAG
GCGTCCTGAAGGACAGTAGTATTGGGCGGTGCACCATTGCTACCCGAGTTGCCTAGGAGGCACACATGACTAAATCAGTT
TATGTGCATCAAAGCAAAGGTATGGTAGGATGTACCAACAAATATATTTACAAATCAAAAAATCAACTCTCGTTCCAACC
AGATTCAGCCAGAGCTATCTCTCTCCATTATCTACCACATA-----------TCAGCCATTTGTAGAAACAATGTTCCTC
ACATTAGAATTTTAAAATAAAACAATGGATAAGAAAGGAAGGCATTGCTAAGCTAATAAATTTCAATTTAATG-CGCATG
CTTCATGGCGCAACATGGCGTATAGTCGAAATAAAACCTCCACCGGATTAGGTCACTCCCACACACTAATCCACTAGTTC
TATCTCAAAAAGTTTGGCCTACTAAAAAAGGTGTATTCGCAATATGCCGATATTTTGGTATCATCTCTCTC---------
-----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-CCCTCCCCCTCCCTCTTAGCGCATGCATCTCTCC
ACTGACTCTACCAAGCAGTCGCCGACATTCGCCCCTCCTAGTGACCCTATGGCGCATCTCCTCCATGAGAAAAGGTGAGT
GCCCCTGATTTTTCTTACCTTCTCCCTGAGATCCAACTTCCCCAATTTCAGTTTTGTTTATTGATGATTCACTTCTTCTC
TTTAATTTTAGGAACCCTAAATCCAAATTGGCTGAGGGGATTTCTGACTCGATTCTGAGCCGCCTCGCTTCCTCGTCGGT
GCTACCGCTCGATGATGAGGACCTTCTCCAGGAGATCCTCCTCCACCTCCCTCCACAACCATCCTCCCTCCCGCGCGCCT
CGCTTGTTTGCCCATGCCGGCGTAACATCCTTTCCAACCACAAGTTTCTCCGCCGCTTTCGCAAGCATCACCGGAAACCA
CCTCTGCTTGGCTTCTTTGCAAGGTGTTTAATCAGTAAAGCGACCGTCTTCACTTCTGTCCTTAACTCGCCTGACTGCAT
CCCTGCTGGTCGCTTTCTCGTGCCACACAGCCACAACCCGTTCAAGGAGT---------TGCGCTTCATGGGATGCCGCC
ATGGCCTCGCTGTCCTATTCGAAATGTCACTACATTCCCCCATGCCAACGGGTTTGATTGTGTGGGATCCACTCAATGGT
CAACAACACAACCATTTGACAATGCCATCAGGGCTCAATGGTGACAAATGGGAGTGTTGGAATGCCACTGTGTTGTGCAC
TAATGTCGAAGATGGTCATGTGCACGGTGATTGCTTCTCGAGCCC-GTTCAAATTGGTCTTGATCTTCAACAGAGACACA
GATGCTTCAACCTGCGTCTACGAATCGATATCTGGTGTATGGGGAGATATTGTCTCCGTGGAAACCAA-GA-AAGTAATT
TCTCCCTTGAGACCCAGCATTCTGATTGGAAATGTACTTTACTGGTTGCTTGTTGGAGGTGAAGTCCTTGTGCATGATTT
TGAAAGGCAGAGTCTTGGTCTGATTGAGAAGCCAGCAGACACACATAATGGACATGTCGAGCTTTCTTATCATCTCTTAC
GGATAGAGGATAATGGACTTGGTATGGCCATTGT-GTCAGAACTTACAATTAAATTATGGGAGAGGAAATCCAACTGTGA
TGGTGTTG--------------CTGAAGAAAATTGCTCCACTGGATG-GGTTGTTTCCGCAGACAATGCCTAGTGGTCAC
ATGTGGATATTTTTGGTGGGGTATGATGAGGAAGCAAATGTGATTGTTCTGTCTACTATGAGTGGCATGTTCATGCTCCA
ACTTGATTCTATGCAAATCAAAGATATTTCTATGAGAATTAATCTACGTCACTCAGTCATTTATCCCTATAGAAATTTCT
ATAC----GGTAATACCTCACTATCTACATTGCACAAACTACAGTAATACAATTAATTTTTATTCGTTGACATTCATTCT
AGTTACTTTTAGTT----------------------------------------------------------TCTTAGTC
TGTGTGGTGATCTTATGGTGATGTAATTTCTTATACTCGGCAACACTTGAACTAGAA-AAGGGGAAGAACCATAACTATT
GTTGTCTCTTAGTTGATCTTTTCGCATGACTTTTCTAGCAGTTGGAAACTAGTTGATCCC--------------------
-------TAATTTCTAAAATAGTA-TTACGGTAGGTACATTTGGAAGTTTAAAGCCTGATATCTTTTTCATTCAACATTT
TTCTTCACAGATATATCTTGATAGTAATAATCAATTCAAATATCATTTAGTTTTTTCATC-AAAAACAATATGTCATTTT
CTTAATATGTGTATTATGTTTTGGCCCATTGGATATATCTAGTACATGTTCTCACAAGAATAATTCTGGATTACTATTTT
TTTT--G---AACATGTAAATAGTCTTTACATATCTTGAAAAAGTATTATTATTGTTGTTTCTTGATATTAATCCCCTCT
CACTTAGAGCAAACCATATTAGTGAATTTGAATAGGTGAGGAGAAGGGTACCCAGGCGAGGAC--TACTACAACTACACA
TATGGTGAATTGCGGAATATG---------------ACCTAGAAGGCACATGT-GGGGGCTGGAATTAATGGGCATCATA
TAATCTAAAGCTTTGTATTTCCTGAATACTTGTATGACCATCTATCTAGTATGGCTAGCTGGAGCTCAAGTGCTAAGAGA
TGTAATAATAAATAAAGTTGTGAATCCTACTTAAGACTTCTAGCCCAATGTGGCATCTTATTCTAGTT
>chr3D_8
TCAGCTAATAC-------GACAGATATGAAAGAAAATTGGAGCCAATGTAAGCTTGAACATGTGAGGTAATACCTGTCAA
AATGAGGATATAGTGAAGCAAATCACTCCAGAGCAAGGCAGTCAGTCATATGAAATTCAGTGGGAACATCATAGAAAGGA
AAAAAGGACACCCGAGTTGGAGACGGTTTCCTTAAGTCAGAATATTGATGCTTGTTCCCTGAGCAACAAAATCTCGAGGA
CGAGATTTCTTTAAGAGGGGAAGGTTTGTAACACCCTGGATTTTGGCCCTTTCTTTTTCTTTTGATTTTCTGTGGATTTT
GTTTTGGATTTCTTTTTCTGTGGCTATGTAGTCTGGAAACCTGAGAAGATGACCTCTTCTTCCTTTCCAGAGTGGTTTGT
CATCCTCAAAACCATCCCAAGATCATGTCATTTCCCATCTTGCGGGTCATCACCAGGCCAGTCGACGACGGGGAGGGGAG
GCATCCTGAAGGACAGTAGTTTTGGGCGGTGCACCATTGCAG-CCGAGTCACCTAGGAGGCACACAGGACTAAATCAGTT
TATGTGCATCAAAGCAAAGGAATGGTAGGATGTACCAACAAATATATTTACAAATCGAAAAATCAACTCTCGTTCCAACC
AGATTTAGCCAGAGCGATCTCTCTCCATTATCTACCACATAAAAA--TGTATTCAACCATTTGTATAAACAATGTTCCTC
ACATTAGAATTTTAAAATAAAACAATGGATAAGAAAGGAAGGCATTGTTAAGCTAATAAATTTCAGTTTAATG-CACATG
CTTCATGGGGCAACAGGGCGTATAGTCGAAATAAAACCTCCACCGGATCAGGTCACTCCCACACACTAATCGACTAGTTG
TATCTCAAAAAGTTTGACCTACTAAAAAAGGCGTATTCACAATATGCCGATATTTCGGTATTATCTCTCTCTCTCTCACC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCTCCCCCTTCCTCCCAGCGCGTGCATCTCTCC
ACTGACTCTACCAAGCAGCCGCCGACATTCGCCCCTCCTAGTGACCCTATGGCGCAGCTCCTCCATGAGAAAAGGTGAGT
GCCCCTGGTTTTTCCTAGCTTCTCCCTGAGATCCAACTTCCCCAATTTCAGTTTTATTTATTGATGATTCACTTCTTCTC
TTTAATTTTAGGAACCCTAGATCCAAATTGGCTGAGGGGATTTCTGACTCGATTCTGAGCCGCCTCGCTTCCTCGTCGGT
GCTACCGCTCGATGATGAGGACCTTCTCCAGGAGATCCTCCTCCGCCTCCCTCCACAACCATCCTCCCTCCCGCGCGCCT
CCCTTGTCTGCCCGTGCTGGCGTAACATCCTTTCCAACCACAAGTTCCTCTGCCGCTTTCGCAAGCATCACCAGAAACCA
CCTCTGCTTGGCTTCTTTGCAAGGTGTTTAATCAGTAAAGCGACCGTCTTCACTTCTGTCCTTGACTCGCCTGACTGCAT
CCATGCTGGTCGCTTTCTCGTGCCGCACAGCCACAACCCGTTCAAGGAGT---------TGCGCTTCATGGGATGCCGCC
ATGGCCTCGCCGTCCTACTCGAAATGTCACTACATTCCCCCATGCCAACGGGTTTGATTGTGTGGGATCCACTCAATGGT
CAACAACACAACCATTTGACAATGCCACCCGGGCTCAATGGTGACAAATGGAAGTGTTGGAATGCCACTGTGTTGTGCAC
TAATGTCGAAGATGGGCATGTGCATGGTGATTGCTTCTCGAGCCC-GTTCAAATTAGTCTTGATCTTCAACAGAGACACA
GATGCTTCAACTTGCGTCTACGAATCAATATCTGGTGTATGGGGAGATATTGTCTCTGTGGTGACCAA-GA-AAGTAATT
TCTGCCCTGAGACCCAGCATTCTGATTGGAAATGTACTTTACTGGTTGCTTGTTGGAGGTGAAGTCCTTGTGCATGATTT
TGAAAGGCAGAGTCTTGGTCTGATTGAGAAGCCAGCAGACACACATAATGGACATGTCGAGCTTTCTTATCATCTCTTAC
GGATAGAGGATAATGGACTTGGTATGGCCATTGT-GTCAGAACTTACAATTAAATTATGGGAGAGGAAATCCAACTATGA
TGGTGTTGTTGGATGGGTGTTGCTGAAGAAAATTGCTCCACTGGATG-GGTTGTTTCCGCAGACAATGCCTAGTGGTCAC
ATGTGGATATTTTTGGTGGGGTATGATGAGGAAGCAAATGTGATTGTTCTGTCTACGATGAGTGGCATGTTCATGCTCCA
ACTTGATTCTATGCAAATCAGAGATTTTTCTATGAGAATTAATCTACGTCACTCAGTCATTTATCCCTATAGAAATTTCT
ATAC----GGTAATACCTCACTATCTACATTGCACAAACTACAGTAATCCAATTAATTTTTATTCGTTGACATTCATTCT
AGTTACTTTTAGTT----------------------------------------------------------TCTTAGTC
TGTGTGGTGATCTTATGGTGATGTAATTTCTTATACTCGGCAAGACTTGAACTAGAA-AAGGGGAAGAACCATAACTATT
GTTGTCTCTTAGTTGATCTTTTCGCATGAGTTTTCTAGCAGTTGGAAACTAGTTGATCTC--------------------
-------TAATTTCTGAAATAGTA-TTACGATAGGTGCATTTGGAAGTTTAAAGCCTGATGTCTTTTTCATTCAACATTT
TTCTTCACAGATATATCTTGATAGTAATAATCAATTCAAATATCATGTAGTTTTTTCATC-AAAAATAATGTGTCATTTC
CTTAATATGTGTATTATGTTTTGGCCCATTGGATATATCTAGTACATGTTCTCGCAAGAATAATTCTGGATTACTATTT-
-TTT--T---AACATGTAAATAGTCTTTACATATCTTGAAAAAGTATTATTATTGTTGTTTCTTGATATTAATCCCCTCT
CACTTAGAGCAAACCATATTAGTGAATTTGAATAGGTGAGGAGAAGGGTACCCAGGCGAGGACTATACTACAACTACACA
TATGGTGAATTGCGGAATATGAGAATGATATATATGACCTAGAAGGCACATATGGGGGGCTGGAATTAATGAACATCATA
TAATCTAAAGCTATGTATTTCCTGAATACTTGTATGACCATCTATCTAGTATGGCTAGCTGGAGCTCAAGTGCTAAGAGA
TGTAATAATAAATAAAGTTGTGAATCCTACTTAAGACTTCTAGCTCAATGTGGCATGTTATTCTAGTT
>chr3B_650
--------------------------------------------------------------------------------
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----------AGAGCTATCTCTCTCCATTATCTACCACATAAAAAAATGTATTCAACCATTTGTATAAACAATGTTGCTG
GCATTA-AAATTTAAAAAAAAACAATGGATAAGAAAGGAAGGCATTGCTAAGCAAATAAATTTCAGTTTAATGGCACATG
CTTCATGGCACAACGGGCCGTATAGTCGAAATAAAACCTCCACTGGATCAGGTCACTCCCACACACTGATCGACTAGTTG
TATCTCAAAAGGTGTGACCTACTAAAAAAGGCATATTCGCAAGATGCCAGTTTTTCAGTATCA-----------------
-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCGTGTGCAT-----------------------------------C
TCTAACTCTACCAAGCATCCGCCCACATTCGCCCCTCCTAGTGACCCTATGGCGCAGCTCCTCCATGAGAAACGGTGAGT
GCCCCTGATTTTTCCTAGCTTCTCCCTGAGATCCAACTTCCCCAATTTCAGTTTTATTTATTGATGATTCACTTCTTCTC
TTTAATTTTAGGAACCCTAGATCCAAATTGGCTGAGGGGATTTCTGGCTCAATTATGAGCCGCCTCGCTTCCTCACCGGT
GCTACCGCTCGATGATGAGGACCTTCTCCAAGAGATCCTCATCCGCCTCTCTCCACAACCATCCTCCCTCCCGCGCGCCT
CCCTTGTCTGCCCGTGCTGGCGCAGCATCCTCTCCAACCACAAGTTCCTCTGTCGCTTTCGCAAGCATCACAGGAAACCA
CCTCTGCTTGGCTTCTTCGCAAGGTGTTTAATCACTAAAACGACCGTCTTCACTTCCGTCCTTGACTCGCCTGACCGCAT
CCCTGCTGGTCACTTTCTCGTGCCGCACAGCCACAACCCATCCAAGCGGT---------TGCGCTTCATGGGATGCCGCC
ATGGCCTCGCCGTCCTATTTGAAATGTCACTCAATTCCCCCATGCCAACAGGTTTGATTGTGTGGGATCCACTCACTGGT
CAACAACACAACCATTTGACAATGCCACCAGGGCTCAATGGAGACAAATGGAAGTGTTGGAATAGCACTGTGTTGTGCAC
TAATGTCGAAGATGGGCATGTGCACGGTGATTGCTTCTCGAACCC-ATTCAAATTTGTCTTGATCTTCAACAGAGACACA
GATGCTTCAGCATGCGTCTATGAATCAACATCTGGTGTATGGGGAGATATTGTCTCTGTGGTGACCAA-GA-AAGTAATT
TCTCCCCTGAGACCCAGCATCCTGATTGGAAATGTACTTTACTGGTTGCTTGTTGGAGGTGAAGTCCTTGTGCATGATTT
TGAAAGGCAGAGTCTTGGTATGATTGAGAAGCCAGCAGACACACATAATGGACATGCCGAGTTTTCTTATCATCTCTTAC
GGACAGAGGATAATGGACTTGGTCTCGCCATTGT-GTCTAATTTTACAATCAAATTATGGGAGAGGAAATCCAACCGTGA
TGGTGTTGTTGGCTGGGAGTTTTTGAAGAAAGTTGCTCCATTGGATG-GGTTGTTTCCGGAGCCGATGCTTAGTGGTCAC
ATGTGGATACTTTTGGTGGGGTATGATGAGGACACAAATGTGATTGTTCTGTCTACGATGACTAGCACGTTCATGCTCCA
ACTTGATTCTATGCAAATCAGAGATATTTCTGTAAGAACTAATCTACGTCACCCAGTCATTTATCCCTATAGAAATTTCT
ATACTGCAGGTAATACCTCACTATCTACATTGCACAAACTACAGTAATCCAAATAATTTTTATTTTTTGACATTCATTCT
AGTTACTTTTAGTTCGTGTTCCTTGGTCAAGTATGGACTA-GATATATAAGAATA--CATTTCTTGTCCGTTTCTTAGTC
TGTGTGGTAATCTTATGGTGATGTAATTTCTTATACTGGGCAACACTTGGACTAGAA-AAGGGGAAGAACCATAACTATT
GGTGTCTCTCAGTTGATCTTTTTGCATGGGTTTTCTAGCTGTTGGAAACTGGTAACGACCACACTAAGAGAATATTGTGA
AACCATCTTATTTCTGAAATAGTA-TTACGATAGGTGCATTTGGAAGTTTA-----------------CATTCAACATTT
TTCTTCACAGATATATCTTGATAGTAATAATCAATTCAAATATCATGTAGTCGGTTTATA-AAAAATG--ATGTCATTTT
CTTAATATGTGTATTATGTTTTGACCCATTGGATATTTCTTGTACATGCTCTCACAAGAATAATTCTGGATTACTATATT
TTTTCTG---AACATGTAAATAGTCTTTACATCTCTTGGAAAAGTATTATTGTTGTTGTTTCTTGATATTAATCCCCTCT
CACTTAGAGCAATCCATATTGGTGAATTTGAATAGGTGAGGAGAAGGGTACCCAGCCGAGGAC--TACTACAACTACACA
TATGGTGAATTGCGGAATATGACAATGATATATGTGACCTAGAAGGCACATGT-GGGGGCTGGAATTAATGAACATCATA
TAATCTAAAGCTATGTATTTCCTGAATGCTTGTATGACCATCTATCTAGTATGGCTAGCTGGAGCTCAAGTGCTAAGAGA
TGTAATAATCGATAAAGTTGTGAATCCTACTTAAGACTTCTAGCCCAATGTGGCATGTTATTCTA---
>chr3B_1136
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-------------------------------------------AATTTCAAATTGGTTTATTGAGAATTCACTTCCGCTC
TTTGATTTTAGGAATCCTAGATCTAGATCGGTTGAGGGGATTTATGAATCAATTATGAGCCGTCTCCATTCCTTGCCGGT
GATACCACTTGATGACGAGGACCTCCTTTGCC----------------CCCTCCGCAACCATCCTCCCTCCCGCACACCT
TCCTTGTATGCCCACGCTAACGCAACATCCTCTTCGACTCCAAGTTCATATGCCGCTTCCACAAGCACCACTAGAAACCA
CCTATGCTTGGCTTCTTTGCAAGGTGTTTACTCATCGATGTGACCATCTTCACT-CCACCCTTGACTCGCTTGACGGAAT
CCCTGGTACCCGCTTCCTTGTGCCGCACAGCCACAACAGGTACAAGCAGT---------TGCGCTTCCAAGGTTGTTGCC
ATGGTCTCGCCGTCCTAGTCAAAATATCACCACATGCCCCCACGCCAGCGGGTTTGGTTGTGTGGGATCCCCTCACTGGC
AAACAACACAATCATGTGGCTATTCCATCGGTGCTCAATGATGACAAATGGAAATGTTGGAATGTTGTGGTGTTGTGCAC
CAACACCGAAGATGGACATGTGCACGGTGATTGCTTCTCGAGCCCCATTCAAATTGGTCTTGGTCTTCAATAGAGACTCA
AACGCTTCCGCTGGCGTCTACGAATCAACATCTGGTTTATGGGGAGGTATTGTCGCAGTGGTTACTAT-GGGAA-TAATT
TCTTCCATAAGAGCTAACATCCTGATTGGAAATGCACTTTACTGGTTGTTTTGTGGAGGTGACGTCCTTGTGCATGATTT
TGAAAGGCAGAGTCTTGGTGTGATTGAGAAGTTAATAGACACACAAAATGTACATATTGAGTATTCTTATAAGCTCTTAA
TCATAGAAGATAATGGACTTGGTCTCACCATTTT-GTCAAAACATACAATCCAATTATGGGAGAGAAAGTCCAATTGTGA
TGGTTTTGTTCGATGGATGATGTTGAAGAAAATTGCTCCACTAAAGG-GGATGTTTCGGCAGATAGTGCCTCATGATGCT
ATGGGGTTATCTTTGTTGGGGTATGATGAGGACACAAATGTGATTGTTCTGTCTACATCGATTGGCAGATTCATGCTCCA
ACTTGATTCTATGCAAATAAGAGATATTTCTATAAGAGCTAAGATATGTTACCCATTTATTTGTCCCTACACGAATTTGT
ATGTCGCAGGTAATACCTCACTATCTACATTGCACAAACTACAATAATCCATTTAGTTTTCATTTGTTAACATTCATTCC
AATTACT-------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3A_1343
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----------CCCATGCTGACCCAACATCCTCTACGACTCCAAGTTCCTATGCCGCTTCCACAAGCACCACTAGAAACCA
CCTATGATTGGCTTCTTTGCAAGGTGTTTAATCACCGATGTGACCATCTTCACTCCCACCTTTGACTCGCTTGACTACAT
CCCTAGTACTCACTTCCCCATGCCGCACAGCCAAAACATCCCTAGTACTTGCTTCCCCGTGTGTTTCCAAGGTTGATGCC
ATGGCCTCGCCATCCTAGTCAAAATATCACCACATGCCCCCACGTCAACGGATTTGGTTGTGTGGGATCCCCTCACTAGC
AAACAACACAATCATGTGGCTATTCCATCGGTGCTCAATGAAGACAAATGGAAATGTTGGAATGTTGCGGTGTTGTGCAC
TAACTTCGAAGATGGACATGTGCATGGTGATTGCTTCTCGAGCCC-ATTCAAATTGGTCTTGCTCTTCAATAGAGACTCA
AACGCTTTCGCTTGCGTCTACGAATCAACATCTGGTGTATGGGGAGGTATTGTTGCAGTGGTGACTAT-GA-AA-TAATT
CCTTCCATAAGAGCCAGCATCCTAATTGGAAATTCACTTTACTGTTTGTTTTGTGGAGGTGATGTCCTTGTGCATGATTT
TTAAAGGCAGAGTCTTGGTGTGATTGATAAGCTAATAGACACACATAATGTCCATGTTGAACATTCTTATAAGCTCTTAC
GCATATAAGATAATGGACTTGTTCT-GCCATTTT-GTCAAAACATACAACCCAATTATGGGAGAGAAATTCCAATTGTGA
TGCTTTTGTTCGATGGATGATGTTCAAGAAAATTGCTCCACTAGAGG-GGATGTTTCGGCAGATAGTGCCTCATGATGCT
ATGGGGATATCTTGGTTGAGATATGATGAGGGCAAAAATGTGATTGTTCTGTCTACATTGATTGGGATGGCCATGGTCCA
ACTTGATTCTATGCAAATCAGAGATATTTCTATAAGAGCTAATATATGTTACCCATTTATTTATCCCTACAAAAATTTAT
ATGTTGTAGGTAATACCTCACTATCTACATTGCACAAACTACAATAATCCATTTAGTTTTCATTTGTTAACACTCATTCC
AGTTACTTCTAGT-------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3B_1455
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------------------------------------------ACAGTCTGCACTTCTGTCCTTGACTCACCTGACCGCAT
CCCTGCCGCCCGCTTC-TCATGCCGCACAACTCCAACCCCAACAAGAAAT---------TGCGCTTCATGGGCTGCCGTC
ATGG--------TCATATTCGAAATTTTGCTACATGCCACCATGCCAACGGGTTTGATTGTGTGGGATCCACTCACCGGT
GAACAATACAACCATTTGACAATTCCAGCGAGGCTCAAGGGCGACAAATGAAAGTGTTGGAATGCCACTGTGTTGTGCAC
TAATGTCGAAGATGGGCATGTGCATGGTGATTGCTTCTTAGACCC-----------------------------------
-----------------------------------------GAGAGATATTGTCTCTGTGGTGACCAA-GG-AAGTAATT
CTATCCCTGAGATCCAGCATCCTTGTTGAAAATGTACTTTACTGGTTGTTTGTTGGAGGTGACGTCCTTATGCATGATTT
TGAAAGGCAGAGTTTTGGTCTAATTGAGAAGCTAGTAGACACAGCTAAGTGCCATGTCGAGTTTTCTTATCAACTCTTAC
GGATAGAGGATAATGGACTTGGTCTCACCGTTGTGGTCAATACTAACAATCAAATTATGGCAGAGGAAATCCAACTGTGA
TGGTGTTATTGGATGGGTGTTGTTGAAGAAAATTTCTCCATTGGACG-GGTTGTTTCCGCAAACAATGCCCGGAGATCAC
ATGTGGATACTTCTGGTGGGGTATGATGAGGACACAAATATGATTGTTATGTCTATGATGAGTGGCATTTTCATGCTCCA
ACTTGATTCTATGCAAATCAGACACATTTCTATAAGAACTAATGTACGTTACCCAGTCATTTATCCATACAGGAATTTCT
ATACTCCGAGTAATATCTCACCATCTAGATTGTACAAACTACAATAATCCAATTAAATTTTATTTGTTAACATTCATTCT
AGTTACTTTTAGTTCCTGTTCCTTGGTTAAGGATGGACTA-GATACAAAAAAAATTGCATTTCTTGTTCATTTCTTAGTA
TGTGTGGTGATCATATGGTGATGTAATTTCTTATACTAGGCTACACTTTAACTAG-A-AAGGGGAAGAACCATAACAATT
GTTTTCTCTCA-TTGATCTTTCCGCATGAGTTTTCTAGCAACTGGAAACTGGTAACGATCACACTAAGATAGTATAGTGA
AACCATATAATATCTAAAATAGTATTTACGATAGGTGCATTGGGAAGATTAAAGCATGTTGTCTTTCTCATTCACTATTT
TTCTTCACAGATATATCTTGATAGTAATCATCAATTTGAATATCATGTATTTTTCAATGAAAATAGTACTATGTCATTTT
CTTAATATTTGTATTACATTTTGGCCCATTCAATATATCTAGTACATGCTCTCACAAGAATAATTATGGATTACTATTT-
-TTT--TCTGAACATGTAAATCGTCTCTCTCATGAAGACA----TATTATTATTGTTGTTTCTTGATATTAATCCCCTCT
CAGTTAGAGCAAACCATATCAGTGAATTTGAATAGGTGAACAGAAGGGAGCCCAAGCCAGGAC--TGCTACAACTACACA
TATGTTGAATTGCGGAATATGAGAATGATATATATGACCTAGAAGGCACATGT-GGGAGATGGAATGAACGAATATCATA
TAATCCAAAGCTATGTAATTCCTGAATACTTTTATCACCATATATCTAGTATAGCTAGCTGAAACTCAATTGCTAAGAGA
TGTAATAATTGACAAAGCGGTGAATCCTACATAAGACTTTTAGCCCATTATGGCAAATTATT------
>chr3A_1696
--------------------------------------------------------------------------------
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----------------------------------------------------AGTGTTGG-ATGCCATTGTGTTGCGCAC
TAATGTTGAAGATGGGCCTGTGCATGGTGATTGCTTCTCGAACCC-GTTCAAACTGGTCTTGATCTTCAACACAGATACC
GAAGCTTCAGCTTGCGTCTATGAATCAACATCTAGTGTATGG----------TCTCTATGGTGACCAAGGA-AT-TAATT
TCATCCCTAAGACCCAACATCCTGGTTGGAAACGTACTTTACTGGTTGTTTGTTGGAGGTGACGTTCTTGTGCATGATTT
TGAAAGAC--AGTTTTGATGTGATTGAGAAGCCAACATGCACACCTAAGTGTCATGTCAAGTTTTCTTATCATCTCTTAC
ATATAGAGGGTAATTGACTTGGTCTTGTTGTTGTGTCAATTCG-TACAATCAAATTATGAGAGAGGAAATCCAACTGTGA
TGGTGTTGTTGGATGGGTGTTGCTGAAGAAAATTTCTCCACCGGGCAAGGTTGTTTCCGCAAATAATGCATGGCGATCAC
ATGTGGATATTTCTGGTGGGGTATGATGAGGACACAAATATGATTGTTTTGTCTTTGATGAGTGGCATGTTCATGCTCCG
ACTTGATTCTATGCAAATCAGAGATATTTCTATAAAAAATAATCTATGTTACCCAGCCATTTATCCCTACAGAAATTCCT
ATACTCCAGATAATATATCACTATCTAGATTGCACAAACTAAAATAATCCAATTAATTTTTATTTGTTAACATTCATTCT
AGTTACCTTTAGTTCGTGTTCCTTTGTTAAGGATGGACTAAGATATATAAAAATA--CATTTCTTCTTCATTTCTTAGTA
TGTGTGGTGATCTTATGGTGATGTAATTTCTTATACCGGGCTACACTTTATTAACTAGAAGGGGAAGAACCATAACTATA
GTTATCTCTCA-TTGATCTTTCCGCATGAGTTTTCTAGCAACCGGAAACTGGTAACGACCACACTGAGAGAATGTAATGA
AAACATATAATATCTGAAATATTATTTACAATAGGTGCATTGGGAAGATTAAAGCCCGTTGTCCTTTTCATTCACTATTT
TTCTTCACAGATATATCTTGATAGTAATCATCAATTCAAATATCATGTAGTTCTTTT-----------------------
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--------------------------------------------------------------------
>SNPs
-SSS--SSS-SSSSSSSS-----------------------------------S-------------S-----------S
--------------------------S-----------SS---S---------------------S--------------
-------------S--------------------------------S--------SS-S---------------------
S-------------------S--------------------------S--------------------------------
-S-----------------------S---------S-----S--------------------------------------
---S---S----------------------------------SS-----S---S------------S-S-----------
--S-----------------S-------------------SSS------SS---------------S-------------
--------------------S-----------------------------------S-----------------------
-----S-------------------------------------------------S---------S--------------
-----------------------------------------------------------------S---------S----
---------------S--------------------------------S----------------------S-------S
----------------S--------------S-----------------------S------------------------
--------------------------------------------------------S----SS-----S-----------
------------------S-------------------------------------S-----------------------
--------------S--S--------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------S-----------------------------------
-S-----S---------S----------------------------S---S-----------------------------
---------------------------------------------------------------S----------------
------------------------S-------------------------------------------------------
----------S---------------------------------------------------------------------
---------------------------------------------------S----------------------------
---------------S----------------------------------------------------------------
-----------S--------------S-----------------------------S----SS-----------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------S-----------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
------------------------------S-----S-----------------------S-------------------
----------------------------------------------S-------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------SS-------
------------S-------------------------------------------------------------------
--------------------------------------------------------S-----------
>forward_469
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ACACAAGGCCAGTCGACAAT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1776
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCATGTGCACGGTGATTGCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>forward_816
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CATG
CTTCATGGCGCAACAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1927
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TTGAGACCCAGCATTCTGATTG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>forward_1097
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CTAGTGACCCTATGGCGCAT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_2757
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACATTTGGAAGTTTAAAGCCTGAT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
