>input_sequence_58449
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--------------------------------------------------------AGTGAGTTCCC-----TCTTGCGC
CTTTTTCCAGTTCCCCCGTCTTACGTTTTTCTTTCAGTTGTTCGTTCCAAAATAGGTGCCGAGCTCACCTAAATT-----
---GTACTTCTAGGAAATGTGATCTGATTTTTAACTATTATTACATTCAGTGAGCAAGCGAGGCCGCACTACTGGTCTGG
TGGCACGAACCACCGTGGTGGACTCTGCATTGCTTGAGTTCACAGTAAACTACGAGCAAACCAAGCACTTAGCCATCGGC
AAGTCCGTCCACTCCGACTACATCTCCGCCGGTGGGCACGACTGGAAGATACATTGCTACCCGCGTGGGTGGGTGAAGGC
CAACAATGGCAAGTATCTCTCTATCTACCTCTACTGCAGGGAACCCGTAACTACTGTCAGGGCCATATTCAAGGCCAATG
TGATGGGCAGGCATGGCAAACCATCTCCGATAGCAGCAACGTCATCAGTTTTTGTGTATAGTAGCAAGGACGACATACTA
TGGCATGGGTGGTCTAGGTTCGTCAAGCGAGTAGATTTGGAGGCAAAATGTGTGATTGAAGGCCGAGTCACATTCCTCTG
CCACATCTTGGTTATGCGTGACGACCCAATCCCCGTGCCACCCCCAAAAATAGGAAGTCATCTTAACAGCCTAATCAATG
GAATGGACATGGACGGGACAGATGTGTCATTCACCACCAATGGTGAGACATTCCATGCGCATCGAGCAGTGCTTGCTGCC
CGTTCTCCGGTTTTCAGAGCCAAGTTCTTCGGCCCGGAGGCTGGGGCCACATCTTCAAACATCGTCTTGGACGACATCGA
GCCCGCGACGTTCAAAGTTTTGCTTAAGTTCATGTACACCGATGCCTTGCCTGGAGATGACAGGGTTGGGCGCTCTCCAC
CGATTGAGACGTTTCATCATCTGCTTGCCGCGGCGGACAAGTACGCACTGCATAGGTTGAAGCTTATCTGCGCCCGAAAG
TTAGGGGAGAATGTGTCACTAGATTCCATTGCAACTACTCTAGATTTGGCAGAGACGAACAGCTGCCTGGAGTTGAAGAC
AAAGTGCATTGACTTATTAGCAGCTGACAAAGATTTCAACAAGGTTGTGTTAACTGAAAGTTTTGTGCTCTTGGGCCAAA
AATTTCCGGCGCTTATTGCTGAGTTGAGAGAGAGGGTTGAGGCATAA---------------------------------
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>chr7A_1_TraesCS7A01G255300
TTGCCAATACGCTTTATCAAGCCTTGCTTCATCACATCTCTTCCTTTCAGGATAG-CCGCCATATTTGACTCGGATGGTT
ACCTATAGTCGCCTCCAATATAGTGGTGTTTGGATAGTAAATGCTTCGAAGCAGCCGAGCACTTAGAGATTCAGGTTGTT
GTAAGATACGCGAGGCCTGTTTCGCCAACATTGCCATATTGAAAAGCTCGAAGTCCTTAAAACCCAAACCCCACATAGAT
TTCGGTTGGGTCATCTCCTTCCACGAAACCCAATGCAGTTTGTGGTGCCCGTCCTTGCTGCCCCACCAAAACTTCCTTAT
GAGCATGTTAAGATGCTTACATAGGCCTCTTGAGAGTTTAAAACAAGACATAGAATACACAGCCACTGCTTGAGCCACTG
CTTTAACCAATACCTCCTTTCCTGCCGTGGACATTGTGCTCTCAATCCAACCCTAAATTTTACTCCAAAGCCGGTCCTTT
AGGTATTTGAAGGCACCAC-TTTTTGAAGCATCAATGTCCGAAGGCATTCCCAAATATCAGTCA---GTAGATAAGAACT
TCGCGTTGTCGTGCATGACGCACAGTG-ACGGAGGACAGTCCACGAACTTTGGAGGCCTTTTGAAAAAACGAACTTTGGA
GTCACCCACGCTAGGTCGTGGGCTAGCCCACCTAAATCACGGGCCGAACCGTTCAAACGACAAAAGCAAGCTCGTTTCGC
TAAAAAAAAAAGGCAAAAGCGAGCTCGTGAAAAGAGAAAGATCGAAGAGGCACCCAGAAAAAAAAACGTTCGCGTGCGAC
AGCGCGGCGAACCCTAGAGAAGTAGAGAACGACTGCAGTGGCGGCGCGTGCATCGCACGTAGCGAGGGCGATCCGGTGCC
GTAAGGCGAGGCGAAAGGAAGGTCGTGGAGGGTGCCCGCCAAAGGAGGACCAAGGGTTGTTGCCAAGGGGGGACGCC---
-------GGACCGAGTCGCCGGCGAACTTAGGCAGCGGCAAGCCCAGACGGAAGACAGTGAGTTCCC-----TCTTGCGC
CTTTTTCCAGTTCCCCCGTCTTACGTTTTTCTTTCAGTTGTTCGTTCCAAAATAGGTGCCGAGCTCACCTAAATT-----
---GTACTTCTAGGAAATGTGATCTGATTTTTAACTATTATTACATTCAGTGAGCAAGCGAGGCCGCACTACTGGTCTGG
TGGCACGAACCACCGTGGTGGACTCTGCATTGCTTGAGTTCACAGTAAACTACGAGCAAACCAAGCACTTAGCCATCGGC
AAGTCCGTCCACTCCGACTACATCTCCGCCGGTGGGCACGACTGGAAGATACATTGCTACCCGCGTGGGTGGGTGAAGGC
CAACAATGGCAAGTATCTCTCTATCTACCTCTACTGCAGGGAACCCGTAACTACTGTCAGGGCCATATTCAAGGCCAATG
TGATGGGCAGGCATGGCAAACCATCTCCGATAGCAGCAACGTCATCAGTTTTTGTGTATAGTAGCAAGGACGACATACTA
TGGCATGGGTGGTCTAGGTTCGTCAAGCGAGTAGATTTGGAGGCAAAATGTGTGATTGAAGGCCGAGTCACATTCCTCTG
CCACATCTTGGTTATGCGTGACGACCCAATCCCCGTGCCACCCCCAAAAATAGGAAGTCATCTTAACAGCCTAATCAATG
GAATGGACATGGACGGGACAGATGTGTCATTCACCACCAATGGTGAGACATTCCATGCGCATCGAGCAGTGCTTGCTGCC
CGTTCTCCGGTTTTCAGAGCCAAGTTCTTCGGCCCGGAGGCTGGGGCCACATCTTCAAACATCGTCTTGGACGACATCGA
GCCCGCGACGTTCAAAGTTTTGCTTAAGTTCATGTACACCGATGCCTTGCCTGGAGATGACAGGGTTGGGCGCTCTCCAC
CGATTGAGACGTTTCATCATCTGCTTGCCGCGGCGGACAAGTACGCACTGCATAGGTTGAAGCTTATCTGCGCCCGAAAG
TTAGGGGAGAATGTGTCACTAGATTCCATTGCAACTACTCTAGATTTGGCAGAGACGAACAGCTGCCTGGAGTTGAAGAC
AAAGTGCATTGACTTATTAGCAGCTGACAAAGATTTCAACAAGGTTGTGTTAACTGAAAGTTTTGTGCTCTTGGGCCAAA
AATTTCCGGCGCTTATTGCTGAGTTGAGAGAGAGGGTTGAGGCATAACATGGAGAATTTTTCATGCCTAGACATCGAAGT
ACTTGTATGGGGGAAAACCTTATATGATGAAAATCGTACTGGTTGATTCATATTGTAATTGATATGATTATATTGGTACC
CTGTTGTGCCTGCTGCACTTTTTTATAATGGTACTGCTTTGTTCATTTTATAATAGAAAATGAATGATACTCTGGTACCC
TGATGTGCCCGATGCACCTTTTCATACATGGAATTGTACAATTACCTAGTGCAATTGGTTTCCCTGTAGAAAAAGTGACA
CCTTATGTGAGTCTTAGCATTTGATTTTGTTGCGTTATCGGTGTATGATATCATCATCTCAAGACAGTGCATCAACTGAC
AAAGTTCGTATCCCCATTTCTCTATTAAAAAGAGAAAGCAGTACTGTATGGTATCATTAGGTTGTATATATCTCTGACTC
TGATCCTTTTCCTGATGAGTTCTGGGTAGTATTTAGCAAGATAAATTCAGATAAAAAATACTATATTTTTATAAACTGAA
ATGCTAAAAACATAACATCAGATTTTTAAGAATGGCAAATCGAACTTTTTTATTGCAAATTGCGTGTCATGGGCATGGCA
ATTCGCTTTAGCAAGCATGGCAAATCCTGACAAAAAAGCTGAACATGACAGGATTTGCCGTGCTTGCCGAAGGGAATTAC
CAGATTCGCGGCACATAATTTGCCAGAAAAATGTTTGATTTGCCATGTTTAAAAGTCTTATACCAGATTTCTAACGCGGT
TTTATAAAAAGAGTGCACAACTTGGGAACTTGTATGAGTGAAAAGAACTGAACTTTCTACTCTACTTTCTTCTCTCAAAA
GAAAATTGAACTCCTTTTTTCCTCTTTCAGGGCCATTCGCAAAGCGCCACTGCAATGACATTCAATTTTCAAATTACATT
ACAAAAACATCAATTGCCAAAGTACCAATGCAAAAATGTGGCAATTATGAAAGTGCAATAGCTGCGAACATGTGTAGAAG
GTTAATT
>chr6A_1
TTGCCAATACGCTTTATCAAGCCTTGCTTCATCACATCTCTTCCTTCCAGGATAGCCCGCCATATTTGACTCGGATGGTT
ACCTATAGTCGCCTCCAATATAGTGGTGTTTGGGTAGTAAATTGTTCGAAGCAGCCGAGCAC-TAGAGATTCAGGTTGTT
GTAAGATACGCCAGGCCTGTTTCACCAGCATTGCCATATTGAAAAGCTCGAAGTCGTTAAAACCCAAACCCCCCATAGAT
TCCGGTTGGGTCATCTCCTTCCACGAAACCCAATGCGGTTTGTGGTGCCCGTCCTTGCTGCCCCACCAGAACTTCCTTAT
GAGCATGTTAAGGTGCTCACATAGGCCACTTGGGAGTTTAAAACAAGACATAGAATACACAGGAACTGCTTGAGCCACTA
CTTTAACCAATACCTCCTTTCCTGTCGTGGACACTGTGCTCTCAATCCAACCCTGAATTTTACTCCAAAGCCGGTCCTTT
AGGTAATTGAAGGCACCAC-TTTTTGAAGCACCAATGTCTGAAGGCATTCCCAAATAT----------------------
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>chr2B_1
TTGCCAATACGCTTTATCAAGCCTTGCTTCATCACATCTCTTCCTTCCAGGAGAACCCGCCATATTTGACTCGGATGGTT
ACCTATGGTCGCCTCCAATATAGTGGTGTTTGAATAGTAAATGCTTCTGAGCAGCCGAGCACTTAAAGATCCAGGTTCTT
GTAAGATATGCCAAGCCTGTTTCGCCAACATTGCCATATTGAAAAGCTCAAAGTCCTTAAAACCCAGACCCCCCATAGCT
TTGGGTTGGGTCATTTCCTTCCATGAAACCTAATGTGGTTTATGGTGCCCGTCCTTGCTGCCCCACCAAAACTTCCTTAT
GAGCATGTTAAGGTGCTCGCAGAGGCCTCTAGGGAGTTTAAAACAAGACATAGAATACACAGGAACTGCTTGAGCAACCG
CTTTAACCAATACCTCCTTCCCTGCAGTGGATATTGTGCTCTCAATCCAACCCTGAATTTTACTCCAAAGCCGGTCCTTT
AAGTATTTGAAGGCACCAT-TTTTTGAGGCACCAATGTCCGAAGGCATCCCCAAATAT----------------------
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>chr2D_1
TTGCCAATACGCTTTATCAAGCCCTGCTTCATCACATCTCTCCCTTCCAGGATAGCCCTCCATATTTGACTCGGATGGTT
ACCTATGGTCGCCTCCAATATGGTGGAGTTTGGATAGTAAATGCTTCTAAGAAGCCGAGCACTTAAAGATTGAGGTTGTT
GTAAGACACGCCACGCCTGTTTCGCCAACATTGCCATATTTAAAAGCTCAAAGTCCTTAAAACCCAAACCCCCCATAGCT
TTGGGTTGGGTCATTTCCTTCCACGAAACCCAGTGCGGTTTGTGGTGCCCGTCCTTGCTGCCCCACCAGAACTTCCTTAT
GAGCATGTTAAGGTGCTCACAAAGGCCTCTAGGGAGTTTAAAGCGGGACATGGAATATACAAGAACTACTTGAGCAACTG
CTTTAACCAATACTTCCTTCCCTGCCGTAGACATTGTGCTCTCAATCCAGCCCTGGATTTTACTCCAAAGTCGGTCCTTT
AAGTATTTGAAGGCACCAC-TTTTTGAGGCACCAATATCCAAAGGCATTCCCAAATAT----------------------
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>chr2D_1
TTGCCAATACGCTTTATCAAGCCCTGCTTCATCACATCTCTCCCTTCCAGGATAGCCCTCCATATTTGACTCGGATGGTT
ACCTATGGTCGCCTCCAATATGGTGGAGTTTGGATAGTAAATGCTTCTAAGAAGCCGAGCACTTAAAGATTGAGGTTGTT
GTAAGACACGCCACGCCTGTTTCGCCAACATTGCCATATTTAAAAGCTCAAAGTCCTTAAAACCCAAACCCCCCATAGCT
TTGGGTTGGGTCATTTCCTTCCACGAAACCCAGTGCGGTTTGTGGTGCCCGTCCTTGCTGCCCCACCAGAACTTCCTTAT
GAGCATGTTAAGGTGCTCACAAAGGCCTCTAGGGAGTTTAAAGCAGGACATGGAATATACAAGAACTACTTGAGCAACTG
CTTTAACCAATACTTCCTTCCCTGCCGTAGACATTGTGCTCTCAATCCAGCCCTGGATTTTACTCCAAAGTCGGTCCTTC
AAGTATTTGAAGGCACCAC-TTTTTGAGGCACCAATATCCAAAGGCATTCCCAAATAT----------------------
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>chr1D_1
TTACCAATACACTTTATCAAACCCTGCTTCAACACATCTCTCCCTTCCAGGATAGCCCTCCATATCTGACTCGAATGGTT
GCCTAAAGTCGCTTCCAATATAGTGGAGTCTGGGTAGTATATGCTTCTCAGCAGCCGAGCACTTAGAGATTCAGGGTGTT
GTAGGATACGCCACGTGTGTCTCACTAACATCGACATATTGAAAAGCTCAAAGTCTTTAAATCCCAGGCCCCCCATAGCT
TTGGGTTGAGTCGTTTCCTTCCATGAGACCCAATGTGGTTTGTGGTGCCCGTCCTTGCTGCCCCACCAGAACTTCCTTAT
GAGCATGTTCAGATGCTCACATAGACCTCTAGGGAGTTTAAAACAGGACATGGAATATACAGGAACAGCCTGAGCAACTG
CTTTAACCAATATCTCCTTACCTGCCGTTGACATTGTGCTCTCATTCCAGCCTTGGATTTTACTCCAAAGTCTGTCCTTT
AAGTATTTGAAGGCACCATTTTTTTGAAGCACCAATATCTGAAGGCATTCCCA---------------------------
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>chr7B_530
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---------------------------------------------------CAAACATCAGTCAATAGTAGATAAGAACT
TTGCCTTGTCGTGCATGACGCACAGTGGACGGAGGGCAGTCCACTAACTTTGGAGGCCTTTTGAAAAAACGAACTTTGGA
GTCACCCACGCTACGTCGTGGGCTAGCCCATCTAAATCACGGGCCGAACCGTTCAAACGGCAAAAGCGAGCTCCT-----
-----------------------------------GAAAGATCGAAGAGGCATCCAGAAAAAAAAACGTTCGCGTGCGAC
AGCGCGGCGAACCCTAGAGAAGTACT-----ACTGCAGTGGCGGCGCGTGCATCGCACGTAGCGAGGGCGATCCGGTGCC
GCAAGGCGAGGCGAAAGGAAGGTCGTGGAGGGCGCCCGCCAAAGGAGGACCAAGGGTTGTCGCCAAGGGAGGACGCCCGC
CAAAGGAGGACCGAGTCGCCGGCGAACTTAGGCAGCGGCAAGCCGAGGCGGAAGGCAGTGAGTGCCCTCTTGTCTTGTGC
CCTTTTTCAGTTCCTCAGTCTTACGTTTTTCCTTACGTTGTTCATTCCTAAATAGGTGGCGAGCTCACCTAAATTGTACT
ACAGTATTTCTAGGAAATGTGACCTGATTTTTAACTATTA---CATTCAGTGAGCAAGCGATGCCGCACTACTGGTCTGG
TGGCACGAACCACCATGGTGGATTCTGCATCGCTTGAGTTCGTAGTAGACTACGAGCAAAACAAGCACTTGGCCGTCGGC
AAGTCCGTCCACTCCGACTACATCTCCGCCGGTGGGCACGACTGGAGGATACATTGCTACCCGCGTGGGTGGGTGAAAGC
CAACAATGGCAAGTATCTCTCTATCTACCTCTACTGCAGCGAACCCGCAACTACTGTCAGGGTCATATTCAAGGCCAATG
TGATGGGCAGGCATGGCAAACCATCTCCAATAGCAGCAACGTCATCGGTTTTTGTGTATAGTAGCAAGGACGACATACTA
TGGCATGGGTGGTCTAGGTTCGTCAAGCGAGTAGATTTGGAGGCAAAATGTGTGATTGAAGGCCGAGTCACATTCCTCTG
CCACATCTTGGTTATGCATGACAACCCAATCCCCGTGCCACCCCCAAAAATAGGAAATCATCTCAACAGCCTAATCGATG
GAATGGACATGGACGGGACAGATGTGTCATTCACCACCAATGGTGAGACATTCCATGCGCATCGAGCAGTGCTTGCTGCC
CGTTCTCCGGTTTTCAGAGCCAAATTCTTCGGCCTGGAGGCTGGGGCCACATCTTCAAACATCATCTTGGAGGACATTGA
GCCCGCGACATTCAAAGTTTTGCTTAAGTTCATGTACACCGATGCCTTGCCTGGAGATGACAGGGTTTTGCGCTCTCCAC
CAATTGAGATGTTTCATCATCTGCTTGCTGCGGCGGACAAGTACGCACTGCATAGGTTGAAGCTTATCTGCGCCCGAAAG
TTAGGGGAGAATGTGTCACTAGATTCTATTGCAACTACTCTAGATTTGGCAGAGACGAACAGCTGCCTGGAGTTGAAGAC
AAAGTGCATTGACTC-TTAGCGGCTAACAAAGATTTCAACAAGGTTGTGTTAACTGAAAGTTTTGTGCTCTTGGGCCAGA
AATTTCCGGCGCTTATTGCTGAGTTGAAAGAGAGGGTTGAGGCATAACATGAAGAATTTGTCATGCCTAGACATCAAAGT
ACCTGTATGGGGGAAAACCTTATATGATGAAAATCGTACTGGTTGACTCATATTATAATTGATATGATTATATTGGTACC
CTGATGTGCCTGCTGCACTTTTTTATAATGGTACTGCTTTGTTCATTTTATAATAGAAAATGAATGATAGTCTGGTACCC
TGATGTGCCCGATGCACCTTTTCATACTTGGAATTGTACAACTGAG---------TGGTTTCCCTGTAGAAAAAGTGACA
CCTTATGTGAGTCTTAGCATTTGATTTTGTTGCGTTATCAGTGTATGATATCATCATCTCAAGACAATGCATCAATTGAG
AAAGTTTGTATCCCGATTTCTCTATTAAAAAGAGAAAACAGTACTGTATGGTTTCATTAGGTTG----------------
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>SNPs
----------------------------------------------S---------------------------------
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-----------S------------------------------------------------------------S-------
------------------------------------S-------------------------------------------
-----------------S--------------S-----------------------------SS----------------
------------------------------------------------------S-------------------------
-------------------------------S------------------------------------------------
-S--S------------------------------S--------S-----------------------------------
-------------S----------------S----------------------------S-------S-----S-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S---------------------------
------------------------SSSSSSS-------------------------------------------------
-S------------------------------S---------------------------S--------S----------
--------------------------------------------S--S------S--------S-------------S--
-S----S-------S-S--------------S--SS-------S----S---------S---------------------
------S---------------S-----------------SSS------------------S------------------
--------------S-------S-------S----------SS----S------------S---------S---S-----
----------------------------------------------S------------------------------S--
---------------------------------------S-------S--------------S-----------------
----------------------------S-----------------S---------------------------------
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-----------------S----S---------------------------------S------S------------S---
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-----------------------S----------S----------------------------S-------S-----S--
---------S---------------------------------------------------------SS-----------
-S-------S------------------S---------------------------------------------------
--------------------------S-----------------------------------------------------
--------------SS-----S---S----------------------------------------------------S-
---------------------------S-----------------------S-------S---------------S----
--S-------------------------------------------S-------S-------------------------
---S-----------------------------------------------------------------S----------
---------------------------S-------------S-SSSSSSSSSSSS-------------------------
---------------------------------------S--------------------------S--------S---S
------S-------S----------------------S--------------S-----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_747
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-------AAAAGGCAAAAGCGAGCTCG-----------------------------------------------------
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>reverse_1824
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---------------------------------------------------------------GTCTTGGACGACATCGA
GCC-----------------------------------------------------------------------------
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>forward_752
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------------GCAAAAGCGAGCTCGTGAAA------------------------------------------------
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>reverse_2774
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-----------------------------------------------------TGCAAATTGCGTGTCATGGG-------
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