>input_sequence_58437
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----------------------------------------------------ATGGGCGCGGAGGCGGGGGAGCTGCCGA
GGATCGACTTCTCCGGCGTGGACGCGTCGGTGCCGGGGACGGGGCGGTGGGACGCGACGCGAGCGCAGGTGATGGACGCG
CTGGCCACCTTCGGCTGCTTCGACGCGCACTACCCGGCGCTCGCCCCGGCGCAGCGTGCCGCGCTCTTCCACGGCGCCGT
CCGCCCGCTCTTCGCGCTGCCTGTGGACGCCAAGCGCCGCAACCACTACGGACCGGGAAAGCCCTTCCACGGCTACCTCG
GGGGGCTCCCGGGCCTCCACGCCTACGAGAGCCTCGCCATTGTCGACGGGCCCGAGCTCGGCGACGTCCAGGCCTTCGCC
GACCTCTTGTTCCCCGCCGCCGACAACGCCGCCTTCTGGTAAGTACATGTCATCCCCGGCGGCGTGAATTGGTTGGTTAA
AAGGTTCGCCGGCCGGAAGCTCACGCTCAGAGATCTACGGATTAATTT-ACTCTTGCTCTGGCGCGCCGACGGCAGCGAG
ACTGTCCACGGGGCGGCGGCGCGGATGGCGGAGCTGGAGGGGGCGGTGCGGCGGATGGTCATGGAGGCGCTCGGGGTGGC
CGTCGACGAGGCCCAGACCCAGAGCGCGCCCTTCTGGCACCTGTTCCGGATGTCAGAGTACGGGGCGCCGACCGCCGACG
AGAAGGCAAGGGAGGTGCGGTACGGGTCGCACCAGGACACCAACTCGCTGAGCGTGGTGTGCCAGCACGAGGTCGACGGG
CTGGAGATGCAGGCCAGGGACGGCCGATGGATCCTCGTCCGGCCGTCCTCGCCGGCGTCGCTCGTCGTCATGGCCGGCAA
CGCTCTCCGGGTACGACAAAGTGTCCAGCACACTGCACTCCGTCGACCATACCA--------GCACAAACTAACTAACCT
CTGAGCTTGGATTGCGCATGCATGC-----AGGCGTGGTCCAACGACCGTGTGCACGCGCCGTTCCACCGGATAAGCGTG
GGCGGGGACGCGACGAGGTACTCGGCCATCCTCTTCTCCGTCCCCGGCGAGCCGACGATCCGGGTGCGCGACGAGCTCGT
GGACGAGGCCGGCGGCCACCCTCGCCGCTTCAGGGACTACGACTACGACGAGTTCGTTCGCTTCTGCGTCTCCGAGGAGG
GTGCTCGCCATGACGACAAGCTCAAGGCCTACTGCGGACTGTAG------------------------------------
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>chr1A_1_TraesCS1A01G414500
GCATTGCTTTATACATAATACCAATCGACCAAACTAAGATTGCATAATTCATAATAGAAATCATAATAGCTACTAGCATG
TAATGGTACCTCCTTCCTCTATCTGATTTTGAAGATCTTGTCGCCGTGAACTCGAGGGAGTAGAATTTACAAACTACCCA
TTTTTCACTTAAAATCTTCATGGGTCACAGTCCACGGAGCACCATGGACTTTTTTTTAACATAGTACAATGGGTGCACCA
TGAACTTGAAGAGTTCCACTTCCACCTAATGCACGTCTACATTGTCGCACCTCTTTCAAACTCATCATTAGATATTTTTT
TTCACTTTTAATGCTTGAACCATTTCCCTTCTCTCGGCACTTAAACTTACGTGTTTTGAAATGGGTGTGGCTAGATCTCA
GTTGACTAATACTTAATTAAGTGACAGAACAATAAAAAGAAGAATTCTTTTTTACACGAATTTGTAAGATCTTACGAATA
TAACATCGACTGAGATTTCGTTAAATCTCAGGCGACTGAGTATAATGGAGCCCTGTGATCAGTCGCTTCTCTCTCACAGC
ACAACAATGCGAT-----------TTTTCTTGGCAGCAACTCCAATTCTTGTACTGAAGTGCCTACGAGATAGCAACATA
ATAGATAGCAACATAATTTTTGTTTATGCTATCCTCTGGTGGTCTAGCCAAATAATGTTAGTAACGTTACAAATTTGGTC
ACCGATTTTTGAGATTTATAATCAGTACAAATGCAAATGAAAGGACAAACTCTGATCTAAACTAGTACTATTATCTGATT
GATTGGTTCATACAGTACATATTTCGTTATTATTCTTTTTCCGGG-AAATGGAATCTTTCCATTTTCATATGCACAGGGA
GTCAACTGTGGCGGCTACGTGCGTTGAGCTCCACTCGATCCATCGCCACCAACCCCATCGCAGTCGGTCAGACTCTCACC
CGAGCTGCCAAGCTGAGATCGATCGAGACCTCGAGAGGCGGCGAGGAGCACCATGGGCGCGGAGGCGGGGGAGCTGCCGA
GGATCGACTTCTCCGGCGTGGACGCGTCGGTGCCGGGGACGGGGCGGTGGGACGCGACGCGAGCGCAGGTGATGGACGCG
CTGGCCACCTTCGGCTGCTTCGACGCGCACTACCCGGCGCTCGCCCCGGCGCAGCGTGCCGCGCTCTTCCACGGCGCCGT
CCGCCCGCTCTTCGCGCTGCCTGTGGACGCCAAGCGCCGCAACCACTACGGACCGGGAAAGCCCTTCCACGGCTACCTCG
GGGGGCTCCCGGGCCTCCACGCCTACGAGAGCCTCGCCATTGTCGACGGGCCCGAGCTCGGCGACGTCCAGGCCTTCGCC
GACCTCTTGTTCCCCGCCGCCGACAACGCCGCCTTCTGGTAAGTACATGTCATCCCCGGCGGCGTGAATTGGTTGGTTAA
AAGGTTCGCCGGCCGGAAGCTCACGCTCAGAGATCTACGGATTAATTT-ACTCTTGCTCTGGCGCGCCGACGGCAGCGAG
ACTGTCCACGGGGCGGCGGCGCGGATGGCGGAGCTGGAGGGGGCGGTGCGGCGGATGGTCATGGAGGCGCTCGGGGTGGC
CGTCGACGAGGCCCAGACCCAGAGCGCGCCCTTCTGGCACCTGTTCCGGATGTCAGAGTACGGGGCGCCGACCGCCGACG
AGAAGGCAAGGGAGGTGCGGTACGGGTCGCACCAGGACACCAACTCGCTGAGCGTGGTGTGCCAGCACGAGGTCGACGGG
CTGGAGATGCAGGCCAGGGACGGCCGATGGATCCTCGTCCGGCCGTCCTCGCCGGCGTCGCTCGTCGTCATGGCCGGCAA
CGCTCTCCGGGTACGACAAAGTGTCCAGCACACTGCACTCCGTCGACCATACCA--------GCACAAACTAACTAACCT
CTGAGCTTGGATTGCGCATGCATGC-----AGGCGTGGTCCAACGACCGTGTGCACGCGCCGTTCCACCGGATAAGCGTG
GGCGGGGACGCGACGAGGTACTCGGCCATCCTCTTCTCCGTCCCCGGCGAGCCGACGATCCGGGTGCGCGACGAGCTCGT
GGACGAGGCCGGCGGCCACCCTCGCCGCTTCAGGGACTACGACTACGACGAGTTCGTTCGCTTCTGCGTCTCCGAGGAGG
GTGCTCGCCATGACGACAAGCTCAAGGCCTACTGCGGACTGTAGGTGCCATGATACGAGGTGATACCATGACTTAGATGC
TCCCATGATACGAGCTTCTGGTCCGTCGGATCTCAGATCCAACGGCTCTAAGTAGGTTCTGAAAGGTTGATGTACTTGTT
CGCAATTTCTAGACTTCAAAAGGTGTTTTATGAAAAATGTTGAAAGCCTTCCGGAAGAGCTCGTATCATGGGAGCATCTA
AGGCTCCGTATCACCTGATACTCTCCCCCTGTAGGTGCAGGCGA----CTAGGAGTGGGGGAACGGCCTGGGCAGCTGGG
CAGCTACACCATCGAATCCGGCCCAAGTCCACCGCTGAAATGAAT-----------------------------------
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-AAGCTTCATCTGCAATTCGTGTTTTGTCTTTTTAGTGACACGTGTGCTAGGTAAAAATCACTTTTGGAATAAGCAAGGA
AGTGCTTACTTGTAGTAGCATTTTTTTAAAAATATT---TTCCCACCTTTACTAGATTATTCTCAATGTTTTCCTACTGT
TGTTATTTCACTGCTGTTTTTATTTTTTACTTGTAGCAAAGGCAGAACACTCGACTAAAATGTGTGGGTGCCTAAAACAC
AAAACAAATTTAGGCCTCATTTGGTTTATAGGGTAGGAAAATCGTAGAAATAGGAAAGTCATAAGAAATGAGATTACTCT
CAAATCCTATGAGTAGGAATAGGAAAGGAGATGCCCTTTGATTCACATCATGGGATTTTTTCCATTCAGTTTAGGCTAAT
ATTTATTTTCCTATGAAATGTAGAGGATAGGAAAAATTCCTCTATAGGAATAAGATTCCATTCAAACAAACCAAAGGGCT
CTAAATGAATTTTTTCTATAGAAATCCTATCCTATGAAATTCCTATAAGATTCCTGTAAACCAAAGAAGGTCTTACAATG
CACTCCAATACATTGCTACGT--------CGGATGCAGTCCATGAAAAGATGCAATAGACCACCGTCCAAC---------
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------------------------------------------CCACAGACATTGCTAAGCATTGGCCAGTGATAGTAGTA
AGCAACCCCATGCCAAGATGACCCAC
>chr1D_521
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----------------------------------------TATAATGGAGCCCTGTGATCAGTCGCTTCTCTCTCACAGT
ACAACAATTCAAGGTGGCTGCGAATTTCCTTGGCAGCAACTCCAATTCTTGTACGGAAGTGCCTATG-------------
--AGATAGCAACATAATTTTTGTTTATGCTATCCTCTGGTGGTCTAGTCAAATAATGTTAGCATCGCTACAAATTTGGTC
ACCGATTTTTGAGATTTATAATCAGTACAAAAATGCAAA----------------------------------------T
GATTGGTCCATACATCTTTCTCTTA-TTATTATTCTTTTTCCGGGGAGATGGAATCTTTCCATTTTCATATGCACAAGGA
GTCAACTGTGGCGGCGACGTGCGTTGAGCTCCACTCGATCCATCGTCACCAACCCCATCGCAGTCAGTCAGACTCTCAGC
CGAGCTGCCCAGCTGAGATCGAC---------GAGAGGCGGCGAGGAGCACGATGGGCACGGAGGCGGGGGAGCTGCCGA
GGATCGACTTCTCCGGCGTGGACACGTCGGCGCCGGGGACAGGGCGGTGGGACGCGGTGAGCGCGGAGGTGATGGACGCG
CTGGCCACCTTCGGCTGCTTCGACGCGCACTACCCGGCGCTCGCCCCGGCGCAGCGCGCCGCGCTCTTCGACGGCGCCGT
TCGCCCGCTCTTCGCGCTGCCCGCCGACGCCAAGCGCCGCAACCACTACGGGCCCAGCAAGCCCTTGCACGGCTACCTCG
GGGGCCTCCCGGGCCTCCACGCCTACGAGAGCCTCGCCGTCGTCGACGGGCCCGAGCCGGGCGCCGTCCAGGCTTTTGCC
GACCTCATGTTTCCCGCCGCCGACAACGCCGCCTTCTGGTACGTGCATGTCACCCCCGGCGGCGTCAACTAGTTAGTTTA
AAGGTTCGCCGGCCACGGCCAGTCGGCC--AGATCGATTGGTTAATCTGACTCTTGCTCTGGCGCGCCAACGGCAGCGAG
ATCGTGCACGGCGCGGCGGCGCGGATGGCGGAGCTGGAGTGGGCGGTGCGGAGGATGGTCAGGGAGGGGCTCGGGGTGGC
AGTCGACGAGGCCGAGGCCCAGAGCGCGC---TCTGGCACCTTTTCCGGATGTCGGAGTACGGGGCGCCCACCGCCGACG
AGAGGGCGACGGAGGTGCGGTTCCGGTCCCACCAGGACACCAACTGGCTGAGCGTCGTGTGCCAGCACGAGGTCGAGGGG
CTGGAGATGCAGGCCAGGGACGGCCGGTGGGTCCTCGTCCGGCCGTC---GCCGGCGTCGCTCGTCGTCATGGCCGGCAA
CGCTCTCCGGGTACGTTCACAA--TGTT--CGCTCCACTCCATCTATCATACTAGCACGGTAGCACAGATCGACTAACCT
CCGAGCTTGGATTGCGCATGCATGCTTTGCAGGCGTGGTCCAACGACCGTGTGCACGCGCCGTTCCACCGGATAAGCGTG
GGCGGGGACGCGACGAGGTACTCGGCCATCCTCTTCTCCGTCCCCGGCGGGCCGACGATCCGGGCGCCCGACGAGCTCGT
GGACGAGGCCGGCGGCCACCCTCGCCGCTTCAGGGACTACGACTACGACGAGTTCGTTCGCTTCTGCGTCTCCGAGGAGG
GTGCTCGCCATGAGGACAAGCTCAAGGCCTACTGCGGAGTGTAGGTGCA-------------------------------
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-----------------------------------TGCAGGAGA----GTAGGAGTGGGGGGACGGCCTGGGC-------
-AGCTACACCATCGAGTCTGGCCCAAGTCCACCGCGGAAAT-AAA-----------------------------------
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-AATCTTGATCTGCAATTCGTGTTTTGGTA--------------------------------------------------
--TGCTTATTAGTAGTAGCATTTTTCTTACTCTGTTCCCACAT----TTTACTATATTCTTCTCGATGTTTTCGGATTGT
TTTTCTTTTACTGCTG-------TTTTTACTTGTAGCAAATGCAGAACAGTTGACTAAAATGTGTGGGTGCCTAAAACAC
AAAACAAATTTA--------------------------------------------------------------------
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>chr1B_632
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--AGATAGTAACATAATTTTTGTTTATGCTATCATCTGGTGGTCCGGCCAAATAATGCGCAACTGC--ACAAATTTGGTC
ACCGATTTTTGAGATTTATAATCAGTAC-AAAATGAAAA----------------------------------------T
GATTGGTCCAT------------TA-TCATTATTCTTTTTCCGGG-AGATGGAATCTTTCCGTTTTCATATGCACAAGGA
GTCAACTGTGGCGGCTACGTGCGTTGAACTCGA-TCCATCCATCGCCACCAACCCCATCGCAGTCAGTCGGACTCTCAGC
CGAGCCGACCAGCTGAGATCGACCGAGATGGGTGCCGT-------------------------------GGAGCTCCCGA
AGATCGACTTCTCCGGCGTGGACGCGTCGGCGCCGGGGACGGGGCGGTGGGACGCAGTGCGCGCGGAGGTGATGGACGCG
CTGGCCACCTTCGGCTGCTTCGACGCGCACTACCCGGCGCTCGCCCCGGCGCAGCGCGCCGCGCTCTTCGACGGCGCCGT
CCGCCCGCTCTTCGCGCTGCCTGTGGACGCCAAGCGCCGCAACCACTACGGGCCCGGCAAGCCCTTCCACGGCTACCTCG
GGGGCCTCCCGGGCCTCCACGCCTATGAGAGCCTCGCCATTGTCGGCGGGCCCGAGCTGGGCGCCGTCCAGGCCTTCGCC
GACCTCTTGTTCCCCGCCGCCGACAACGCCGCCTTCTGGTAAGTACCTACCACTTCCTCTCCTCCGTCGA--TTAGGTAA
GAGGTTACCGGCTGCCGGCCAGATG------GATCGATTGGTTGATCTGACTCTTGCTCTGGCGCGCCGACGGCAGCGAG
GCTGTTCACGGCGCGGCGGCGCGGATGGCGGAGCTGGAGGGGGCGGTGCGGCGGATGGTCATGGAGGGGCTCGGGGTGGC
CGTCGACGAGGGCCAGGCCCAGAGCGCGCCCTTCTGGCACCTGTTCCGGATGTCAGAGTACGGGGCGCCGACCGCCGACG
AGAGGGCGAGAGAGGTGCGGTACGGGTCGCACCAGGACACCAACTCGCTGAGCGTGGTGTGCCAGCACGAGGTCGACGGG
CTGGAGATGCAGGCCAGGGACGGGCGGTGGGTCCTCGTCCGGCCGTC---GCCGGCGTCGCTCGTCGTCATGGCCGGCAA
CGCTCTCCGGGTACGCACGGCAAGTGCT--CGCTCCACTCCATCGACCATACTA--------GCACAGATCGACTAACCT
CCGAGCTTGGGTTGCGCATGCATGC-----AGGCGTGGTCCAACGACCGGGTGCACGCGCCGTTCCACCGGATAAGCGTG
GGCGGGGACGCGACGAGGTACTCGGCCATCCTCTTCTCCGTCCCCGGCGAGCCGACGATACGCGTGCGCGACGAGCTCGT
GGACGAGGCCGGCGGCCACCCTCGCCGGTTCAGGGACTACGACTACGACGAGTTCGTTCGCTTCTGCGTCTCCGAGGAGG
GTGGTCGCCATGACGACAAGCTCAAGGCCTACTGCGGAGTAGCTG-----------------------------------
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-----------------------------TGTAGGTGCAGAAAACTAGGTAGAAGCGGGGGAACGGCCTGGGC-------
-AGCTACACCATCGAGTCCGGCCCAAGTCCGCCGCTGAAATGAATAAGGCTGGTCGTAATGGTAGGATCATAGCTAGTAT
CATGTATGCCAACTAGACAATTTTAATGAGGTGTCATAGCATTAAATGAAGAAAGAGAGGGTGTAGTATCATATCATGAT
ACCGTATCATATTAAATGTTATGCTACTTTGTGTCATGCATGACAATAAATAGAGTACAACATGATACTAATATATGATA
CTATGCATTAGGGAGGTAGTATCATACACTAGTATCATATGCATGATACTAGTATATGATACTCCCCATTACAACCAGCC
TAAGCTTGATCTGCAATTCGTGCTTTGTCTTTTTAGTGACACGTGTGCAAGGTAAAAATCACTATTGGAATAAGCAAGGA
AGTGCTTACTTGTTATTCCACGCACTTAAAAAAAAATACTTTCCACCTTTACTAGATTCTTCTCAATGTTTTCCTACTGT
TGTTATTTCACTGCTGTGTTTAATTTTTACTTGTAGCAAAGGCATAACACTCGACTAAAATGTGTGGATGCCTAAAACAC
AAAACAAATTTAG-------------------------------------------------------------------
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----------------------------------------------------------------------------AATG
CACTCCAATATATTGCTACGTGCCTACGTCGGATGCAGTCCACGAAAAGATGCAATAGACCACCGTCCAAACCTAAGACG
GGCTATTGTCCAGACCCAGCAATGCTACATGTACGAAAAGGTTTTTACGTACCTTACGTATGGGGCGATTTAGCTGTCTT
TGATTTGACATTACTACGCAGGTCTAGCATTTTCGGTCCAGACCACAGACATTGCTAAGCATTGGCCAGTGATACTAGTA
GGCGACCCTATGCCAAGATGATCCAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------S
--------S-S-S--------------S--------------------------S----------S-SSSSSSSSSSSSS
SS-----------------------------------------------------------S-S--S-------------
-------------------------------SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-------S------SSSSSSSS--SS---------------------S----------------------------S---
-----------------------------------------------------------------S------------S-
---------S------------S-----SSSS-------------------S------S---------------------
------------------------------S-------------------------SS---S---S--------------
--------------------------------------------------------S------------S----------
---------------------------------------------------S--S--S----------------------
----S-----------------------------------------------------S----S----------------
----------------------------------------------------S---------------S-S---S-----
--------------SSSSS-SS---SS-SS-----S-SS-S-----S---------------------------------
-----S-----S-------------------------------------------------------S------------
----------------S---------------------------------------------------------------
---S---S------------------------------------------------------------------------
--------------------------S---S----------------SSS------------------------------
---------------SSS-SSSSSSSSSSS-S--S------S----------S--------------S-SSS--------
-S------------------------------------------------------------------------------
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--------------------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S------S------------------------SSSSSSS
S--------------S----------------------------------------------------------------
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-------S----------------------------------------S--------------S----------------
-----------------------------------------S----------------S---------------------
-----------------S----S---------------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
----------S-------------------------------S---------------------------S---------
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--------------------------------------------------------------------------S-----
S--S----S------------S----
>forward_196
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----------------TTCATGGGTCACAGTCCACG--------------------------------------------
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>reverse_1461
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--------------------TCACGCTCAGAGATCTACGGA---------------------------------------
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>forward_290
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------------------------------GCACGTCTACATTGTCGCAC------------------------------
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>reverse_2259
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------------------TGGTCCGTCGGATCTCAGAT------------------------------------------
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--------------------------
