>input_sequence_58408
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-----------------------------------------------------------------------ATGGAGCTC
CTGCCTTCCATAGCCGTCTTCCTACTCCTCTCCTGCTCCCTCGCCGCAGCCATGGTGCCGGCCGGCACGATCGAGCGCGT
GTCCAAGCAGCAGATCCTGGCTAGCATCCCGCCGGGCGGGCATGCCGGCCCGCCCGTTCTGTTCCTCACGTCTCCGTCCG
GCAAGTACGCGGCTTACTTCGTGCGCACCCACACCGCGCCGGGCGCCGGCGGGCTCGGCGCTGACTTTTGCTACGTCGAG
GTGATGGCCGGTGGCGGCAAAGCGGCCGAGGGCGGTGAAGGAGGCGGCGCTGCCGGGGGCGCGAGCGCATGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTGAACACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGCAGCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGC
GTCCGCGACAAGGACGGTGAGCTCGCGTGGCGGGCCAGCGACGAGCCGCGCCACGCGCAGCACTGCGGCGCGCCGGGGTC
ACCGGGCCTTGCGGCCGCGCTGCCGTCCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGC
AGGGCGGCAACGGCCACGCGGCGGAGCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAACAGGT
GGCTTGGGT---------------------------------------------------------------------GA
CGGCTACGGCAT--------------------------------------------------------------------
-TGCACCGGCGGCAGGAGGAGTCGGAGCTGTTGCCCCAGGGGCAGGTGGTTTGGGCG------ACGGCTACGGCATTGCA
CCGGCGGTAGGAGGCGCCGGAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCAACGGTAGG
AGGTGTTGCCGCGGGGGCAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGGC-------------GCAGGA
GCCTTCGGTGGTGTCGGGGACGTTGCAGGACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTC--------
-----------------GCGGGAGTGGCAGGGTTCGGCAGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGTGGA
GCCTACAAGAGCAGCCGTGGGGCCGCCCATCTCGTGGCCATTGGAGCTGCGGTGCTTGTCAGCGCCATGGCCGTGGGGTT
CTGA----------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr5A_1_TraesCS5A01G334400
CATCCTGGATAGACTCCAGGATGGCCTACTGCTCCGCCATCTCCGTGACTTGGGCAATGGCGTACTCCGCCTCCGCCTAC
CCCATGGTGAACCCAGGAGCAAGCTGCTCCGC---CTCC---------------GGATCCGCCACTCCCATCGGTTCTGG
CAGTTGCTCTCCCTCCTCCTCCTCT------------------------------------------------------G
GCTCCGACGAGTTCGGAGGCAGACCAACAGCAGTGCGGGCGGCACGCCTCATCTGGATCTCCTCCGTTGTCTGCC---AG
CGCTCTGGCGTCAGCATAACATACGTCGTGATCTTGCGCCGGACCATGGCGATGCCGGAGAGCATGGGAGAGCGGGGGAG
AGGAGACAGACGGATATGGGTGGCAGCGCAGAGAAGGAGGAGGTGGATGAGCTAGGGTTGGGGGACGCCGGCCGGTTTAA
ATAGCCAAATTTGGCCTCGGCCAGCGAGCCGGAATGACGCCACCCGACGTTCACACTACGACGACGGAGGAAGCGTCTGT
CGGACCGCGAGGTTTCCGGGCGTTTTTTGCATCAGACCTTATCGTTAGTCCTATGTGACGGTCCAGCCTGTGCCCGGACA
CCCCATATCCAACCAATCACCCGGGCGTTTGATACTCGTTTGAGACGCCTGTCCGAGTCATATTTTTGTGACTAGGGACC
GGATGGGCCGCCGGGTAGGCAGGTTTGGGGCGGCTCTAGATGTTCTAACCACTCGTAGGGCACAACAAGAAGTGGAGCCA
GATGCTTTGTGGCGGAATTCCCTTTTTGGCTCCCATGCCCCAACTATTC-------------AACCCAGCTGCCTCACCA
CTCCCCTACTCGTGCAT----GTATTGGAACGGGTGATGTACCA---ACTCCATCCAGCTC--CTCTAACC-------AC
TCGCCATCTCCTACTCCATCACCACCCCAACTATATGTACGCAGC------TCGTCATGCTACACCATGCACAACCACAA
CCACAAG-AACCACAGAGCAGCAGCAAGCACCCAAGTGAGAAGTACGAGAAGCTGCTTGAGCTAGCCAGCCATGGAGCTC
CTGCCTTCCATAGCCGTCTTCCTACTCCTCTCCTGCTCCCTCGCCGCAGCCATGGTGCCGGCCGGCACGATCGAGCGCGT
GTCCAAGCAGCAGATCCTGGCTAGCATCCCGCCGGGCGGGCATGCCGGCCCGCCCGTTCTGTTCCTCACGTCTCCGTCCG
GCAAGTACGCGGCTTACTTCGTGCGCACCCACACCGCGCCGGGCGCCGGCGGGCTCGGCGCTGACTTTTGCTACGTCGAG
GTGATGGCCGGTGGCGGCAAAGCGGCCGAGGGCGGTGAAGGAGGCGGCGCTGCCGGGGGCGCGAGCGCATGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTGAACACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGCAGCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGC
GTCCGCGACAAGGACGGTGAGCTCGCGTGGCGGGCCAGCGACGAGCCGCGCCACGCGCAGCACTGCGGCGCGCCGGGGTC
ACCGGGCCTTGCGGCCGCGCTGCCGTCCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGC
AGGGCGGCAACGGCCACGCGGCGGAGCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAACAGGT
GGCTTGGGT---------------------------------------------------------------------GA
CGGCTACGGCAT--------------------------------------------------------------------
-TGCACCGGCGGCAGGAGGAGTCGGAGCTGTTGCCCCAGGGGCAGGTGGTTTGGGCG------ACGGCTACGGCATTGCA
CCGGCGGTAGGAGGCGCCGGAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCAACGGTAGG
AGGTGTTGCCGCGGGGGCAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGGC-------------GCAGGA
GCCTTCGGTGGTGTCGGGGACGTTGCAGGACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTC--------
-----------------GCGGGAGTGGCAGGGTTCGGCAGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGTGGA
GCCTACAAGAGCAGCCGTGGGGCCGCCCATCTCGTGGCCATTGGAGCTGCGGTGCTTGTCAGCGCCATGGCCGTGGGGTT
CTGAACTTCTGATCGGGAAGACGGATTAGTGTGGCAGTTTGGATATGCGCGCGTGCGTTTTTCTTTTCA--TGTGT--TG
ATATTAGCCATAT--GCTGTGCTTGTAATTGTGGGTGGTGCAAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAA-CT
CAAAATTTAATGG-AAATGATCCTGTTCTAATTTCTAAACTGGGTGCTTA----TCTCTAGAACTGCGAT------TCAA
ATCAAATACTCAAATAGG-------TAGATTGTACTTTGCTCATCCGTCGGTGGGTTCAGTTACC--ATTTTATGGATGT
ATATGATGCCCAGATTAAATTTTCAAAAACAATAGTAATAAACTAAATTCATTCACGATAATCAGAGGCCAATGTATATA
TTATCTCCTCTTGGTCCTACATTTGGCAATGAAACACCTTCAGCTCCGTGAAATTTTACAAGCAAATCATGGGATTCTAG
CAAGCTCCCGAGCATTTTAATTGGCTATCGATCATTGCTTTATAATATAAAGCGAGGGAAACTTTTTATCGTTTTAATTA
GCTATCGAATCAACTTCGCTAGACCCTCATAAACACATTAACGATTGAGATTACCCCGTACCTTTTTCATAATAGATGGC
ACGATGGTCATTTTAAAAGTACATCACCTCTTTTTTTTGGAGAAACTTTTTTTTGAGACAATATTGCTTAGCTTTATTCA
ATCTCCAAAATGTTTACAGGAAAGGGAAGCTCCCCCGGTCGGCCTAACCAAACATGACGACCAAAACAGAGTCCTAAAGC
ATGCCTAGCGAGAGTGTGAGCCTCAAAATTCGAGGTACTAAACTCATGAAATATATTACAGCAAAAGAAATTCCTAGATC
AGTCTTTTATTTCATGTAGAATGGCTCCATACCCTGCTGCCGAGTTCACCTTGATGTCATTCACCACCATCTTGCTATCT
GAAGCAATATGAATCCGGTTCTCGTAAAGATCGTCAGCTAAAGATTGCCCTTCATGTACTCCCAATGCTTC
>chr2D_1
CATCCTAGGTGGACTCCAGGATGGCTTGCTGCTCCGCCATCTCTGCGGCTTGGGCGACGGCAAACTCTGCCTCCGCCTCC
GCCATGTTGAACCCCGGAGCAGGCTATTCCACCTTCTCCTCCTC---------CGGATCCGCCACCTCCATCGCCTCCAG
TAGCTGCTCTGCCTCCTCCTCCTCC---------------------------TCCTCCAACTGCTGCTGCTCCTTCTCCG
GCACCAGCGAGTCCAGAGGCAGACCGACAGCGATACGGGCGGCGTGCCTCACCTGGATATCCTCCGCAATCTGCCTCTGG
TGCTCCGGCATGAGCATAGGGTACGTCGTGATCTTGCGCCGGACCATGGCGATGCCGGAGAGCGTGGGAGAGCGGGTGAG
TGGAG---------------------------------------------------------------------------
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------------GCGGACGGGCTCGAGTAGCGGCGCAGAGAGGG------------------------------------
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-----------------------------------------------------------------------------AAG
AGGTGGATGGGCTAGGGTTG------------------------------------------------------------
-----------------------------------------TGGGACCCCGGC---C------GGCTTAAACAGCCGGAT
TTGGCCTCGGGCAGCGAGCCAGAGCGGCGCCACATGGCATTCACACTGTA---GCGACGGAGGAGG--------------
--------------------------------------------------------------------------------
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-----------------------------------------TGTCCGTCGGACCATCGGGGT------------------
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----------------------------TTCGGGCG-TTTTGCCTGGGACCCCATTGTCAGTCCTACGTG----------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr3D_1
CATCTTGGATGGACTCCAGCATAGCCTGCTGCTCCTTCGTCTTCGCGGTTTGAGCGACGGCGAACTCCACCTCCGCCTCT
GCCATGTTGACCCCCGGAGCAGGCTGCTTCGC---CTCCTCCTC---------TGGATCCGCCGCCTCCATCGGCTCCGA
TAGCTGCTCTCCCTCCTCCTCATCC---------------------------AGCTCC----------------------
-----GGCTAGTCCCAAGGCAGCCCGACAGAGATGGGGGCGGCGCGCGTCACCTGGATCTCCTCCGCGATCTGCCTCTGG
TGCTCCGGCGTCAGCGTAGCGTACGTCGTGATCTTGCGCCGGACCATGGCGATGCCGGAGAGCAGGAGAGAGCGGGGGAG
AGGAG---------------------------------------------------------------------------
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------------GCGGACGGGCTCGGGTGGCGGCGCAGAGAGGG------------------------------------
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-----------------------------------------------------------------------------AGG
AGGTGGATGGGCTAGGGTTG------------------------------------------------------------
-----------------------------------------GGGGACGCCAGC---C------GGGTTAAATAGCTGGAT
TTGGCCTCGGGCGGCGAGCCAGAGCGGCGCCACGCGGCGTTCACACCGCG---GCGATGGAGGAGG--------------
--------------------------------------------------------------------------------
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-----------------------------------------CCTCCATCGGGCCACCGGGTT------------------
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----------------------------TCCGGGCG--------------------------------------------
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-----------------------------------------------------------------------
>chr4A_1
CATCCTGGATGGACTCCAGGATGGCCTACTGCTCCGCCATCTCCACGGCTTGGGCGACGGCGAACTCCGCCTCCGCCTCT
TTCAATTTGAACGCCGCTCG----------------TCCTCCTA---------CGGATCCGCCATCTCCATCGGCTCCGG
TAGCTGCTCTCCCTCCTCCTCCTCCTCCGACTGCTGCTCCTCCTTCTCCTTCGGCTCT----------------------
-----GGCAAGTTCGGAGGCAGCTCCTCAGCGATGCAGGCGGCACGCCTTGCCTGGATCTCCTCTGCGATCTGCCTCCGA
TGCTTTGGCGTGAGCATAACATACGTGATGATCTTCCGCCGGACCATAGCGATGCCGAAGAGCTTGGGAGAGCGGGGAA-
--------------------------------------------------------------------------------
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------GAGGAGGCAGACGGGCTCGGGTGGCGGCGCAGAGAGGG------------------------------------
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-----------------------------------------------------------------------------AGG
AGGTGGATGGGCTAGGGTTG------------------------------------------------------------
-----------------------------------------GGGGACGCCGGC---C------GGTTTAAATAGTCGGAT
TCGGCCTCGGGCGGCGAGCCGGAGCGGCGCCGCATGGCGTTCACACGGCG---GCGATGGAGGAGG--------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------CGTTCGTTGGACCACTGGGTT------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------TTCGAGCTACTCCGCATGGGACCCCGTCGTCAGTCCGATGTGGCGGACGCGC
CTGGACGTGCCCGGGC-------GCTCCATATCC----------------------------------------------
-----------------------------------------------------------------------
>chr7D_1
CATCCTTGATGGACCCCAGGATGGCCTGCTGCTCCGCCATCTTCGTGACTTGGGCGACGACGAACTCCTCCTCCACCTCC
GCCATGTTGAACCCCGGAGCAGGCTGCTCCGC---CTCCTCCTCCTCCGGATCCGGATCCGCCACCTTCATCGGCTCTAG
TAGCTGTTCTCCCTCCTCCTCCTCC---------------------------GGCTCC----------------------
-----GGTGAGTCCGGAGGCAGCCCGACAGCGATGCGGACGGCGCACCTCGCCTGGATCTCCTCCACGATCTGCCTCCAG
CGCTCTAGAGTCAGCATAGCGTACGTCGTGATCTTGCGCCGGACCATGGCGATGTCGAAAAGCGTGCGAGAGCGGGGGAG
AGGAG---------------------------------------------------------------------------
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------------GCGGACGGGCTCGGGTGCCGGCGCAAAGAGGA------------------------------------
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-----------------------------------------------------------------------------AGG
AGGTGGATGGGCTAGGGTTG------------------------------------------------------------
-----------------------------------------GGGGACGACGGC---C------GGCTTAAATATCCGGAT
TTGGCCTCGAGCAGCGAACTGGAGAGGCGCAGTGCGGCGTTCACACCGTG---GCGACGGAGGAGG--------------
--------------------------------------------------------------------------------
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-----------------------------------------CATCCGTCGGACCGCCGGGTT------------------
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----------------------------TCCGGGCAATTATGCGTGGGACCCTATCGTCAGTCCTATGTGGCGG------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr5B_682
TAGATGCTCC----------------------------------------------------------------------
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----------------------------------------------AACCACTCGCAGGACACAGCACAAAGTGGAGCCA
GATGCTTGTG---------------------CCCGTGCCCCAACTATTCATCAAACTACCTAAAACCAGCTGCCTCACCA
CTCCCCTGCTC-TGCATCCTAGTATTGGAACGGGTGATGTACTACTAACTCCATCCATGTCCTCTCTAACC-------AC
TCGCCATCTCCTACTCCATCGCCACCCTAACTATATGTACGCAGC------TCATCATGCCACACCATGCACAACCACAC
AGGTCGACAACCACAGAGCAGCAGCAAGCACACAAGTAAGAGACACCATAAGCCGCT--AACCAGCCAGCCATGAAGTTC
CTGCCGTCCATAGCCGTCCTCCTACTCCTCTCCTGCTCCCTCGCGGCGGCCACGGTGCCGATCGGCACGATCGAGCGCGT
GTCCAAGCAGCAGATCCTGGCGAGCATCCCGCCTGGAGGGCACGCCGGTCCGCCCGTGCTGTTCCTCACGTCTCCGTCCG
GCAAGTACGCCGCCTACTTCGTGCGCACCCACACCGCGCCGGGCGCCGGAGGGCTCGGCGCCGACTTTTGCTACGTCGAG
GTGATGGCCGGTAGCGGCAAAGCTTCCGAGGGCGGT------------GCTGCCGGGGGCGCGAGCGCGTGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTGAACACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGTAGCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGC
GTCCGCGACAAGGACGGCGAGCTCGCGTGGCGGGCCAGCGACGAGCCGCGCCACGGGCAACACTGCGGCGCGCCGGGGTC
ACCGGGCCTTGCGGCCGCGCTGCCGTCCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGC
AGGGCGGCAACGGCCACGCGGCCGAGCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGT
GGCTTGGGCGACGGCTATGGTATTGCACCGGCGGCAGGAGGAGTCGGAGGTGTTGCCCCAGGGGCAGGTGGCTTGGGCGA
CGGCTATGGCAT--------------------------------------------------------------------
-TGCACCGGCGGCAGGAGGAGTCGGAGGTGTTGCCCCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCA
CCGGCGGCAGGAGGCGCCGGAGGAGTTGGACCGGGGGCAGGTGGCTTGGGCGATGGCTACGGCATTGCGCCGACGGTAGG
AGGTGTTGCCGCGGGGGCAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGAG-------------ACAGGA
GCCTTCGGTGGTGTCGGGGATGTTGCCGGACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTC--------
-----------------GCGGGAGTGGCAGGGTTCGGCAGCCAGCCGCTG---GTGGACAACAACCCCTACGACAGTGGA
GCCTACAAGGGCGGCCGTGGGGCC---CATCTCGCAGCGATCGGAGCTGCGGTGTTTGTCAGCGCCATGGCCGTGGGTTT
CTAA--------TCGGGAAGACGAATCA--GTGGCAGTTTGGATGTGTGCGCGTGCGTTTTTCTTTTCCTGTGTGT--TA
ATATTAGCTATAT--GATGA---TGTGCTTGTGAGTGGTGACAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAAACT
CAAAATTTAGTGAAAAATGGTTCTGTTCTAAATTGGTTGCGCGTCGCTAGA-------TAGAACTGTGAT------TCA-
----ACTTTTCAAATACTCAAATATTAAATTGCACTTTGTTCATCCGTCGGTGGGTTTAGTTACCCTATTTTATGGATGG
TATAATGATGC---------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr5D_752
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--------------------------TGGCTCCCATGCCCCAACTATTCT------------AACCCAGGTGCCTCACCA
CTCCCCTGCTTGTGCACCCTAGTATTGGAACGGGTGATGTACTACTAACTCCATCCATGTCCTCTCTAACC-------AC
TCGCCATCTCCTACTCCATCACCACCCTAACTATATGTACGCACC------TCATCATGCCACACCATGC----------
------ACAACCACAGAGCAGCAGCAAGCACACAAAAGA----TACGAGAAGCCGCT--AGCCAGCCAGCCATGAAGTTC
CTGCCTTCCATAGCCGTCCTCCTACTCCTCTCCTGCTCCCTCGCGGCGGCCACGGTGCCGACCGGCACGATCGAGCGCGT
GTCCAAGCAGCAGATCCTGGCTAGCATCCCGCCGGGCGGGCATGCCGGCCCGCCCGTTCTGTTCCTCACGTCTCCGTCCG
GCAAGTACGCGGCCTACTTCGTGCGCACCCACACCGCGCCGGGCGCCGGCGGGCTCGGCGCTGACTTTTGCTACGTCGAG
GTGATGGCCGGTAGCGGCAAAGCGGCCGAGGGCGGTGAAGGAGGCGGCGCTGCCGGGGGCGCGAGCGCGTGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTGAACACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGCAGCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTGCAGACGCTCGAGCTCGTGGACGACGGCGACATGCGC
GTCCGCGACAAGAACGGCGAGCTCGCGTGGCGGGCCAGCGACGAGCCGCGCCACGCGCAGCACTGCGGCGCGCCGGGGTC
ACCGGGCCTTGCGGCCGCGCTGCCGACCTTCGCCGAGCCCATCGGCGCGCACAGCAGCAATCTGCCGTTTGGCCAGGTGC
AGGGCGGCAACGGCCACGCGGCCGAGCTGCCGCAGGCGGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGT
GGCTTGGGCGACGGCTATGG------------------------------------------------------------
---------CAT--------------------------------------------------------------------
-TGCACCGGCGGCAGGAGGAGTCGGAGGTGTTGCCCCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCA
CCGGGGGCAGGAGGCGCCGGAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCGACGGTAGG
AGGTGTTGCCGCGGGGGCCAGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGCCGGG-------------ACAGGA
GCCTTCGGTGGCGTCGGGGACGTTGCAGGACATGGTGAAGCGGCGACGGCGGC---C------GGTGGTGTC--------
-----------------GCGGGAGTGGCAGGGTTCGGCAGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGTGGA
GCCTACAAGAGCAGCCGTGGGGCC---CATCTCGTGGCCATTGGAGCTGCGGTGCTTGTCAGCGCCATGGCCGTGGGGTT
CTGAACTTCTGATCGGGAAGACGGATTAGTGTGGCAGTTTGGATATGCGCGTGTGCGTTTTTCTTTTCA--TGTGT--TG
ATATTAGCCATAT--GCTGTGCTTGTGATTGTGGGTGGTGCAAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAA-CT
CAAAATTTAATGG-GAATGGTCCTGTTCTAATTTCTAAACTGGGTGCTTA----TCTCTAGAACTGCGAT------TCA-
----AATACTCAAATAGG-------TAGATTGTACTTTGCTCATCCGTCGGTGGGTTCAGTTGCC--ATTTTACGGATGT
ATATGATGTCCAGATTGAATTTTCAAAAACAATAGTAATAAATTAAATTCATTTACCATAATCAGAGGCCAATGTATATA
TGATCTCCTCTTGGTCCTACATTTGGCAATGAAACACCTTCAGCTCCGTGAAATTTTACAAGCAAATCATGGGATTCTAG
CAAGCTCCTGAACATTTTAATTGGCTATCGGTCGTTGCTTTATAATATAAAGCG-GGGAAACCTTTTATCGTTTTAATTG
GCTATCGAATCAACT-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr2A_789
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------ACCA
CTCCCCTACTCGTGCATGC-AGTATTGGAACGGGTGATGTACTG---ACTCCAGCTCCTGA---GCTAACC-------AC
TCGACATCTCCTACTCCATCACCACCTCAACTACATAAGCACACGCACGCTTCATCATGCTACACCATCCACAACCACAG
CCACAG-------------AGCAGCAAGCACACAAGCAAGAAACACGATCGAGAAGCT--GCCAGCCAGCCATGGAGGCC
ATGTCATACATAGCCGTGCTCCTACTCCTCTCCTGCTCGCTCACGGCGGCGACGGCGCCGGCCGGCACGATCGAGCGCGT
GTCCAAGCAGCAGATCCTGGCGAGCATCCCACCAGGAGGGCACGCCAGCCCGCCCGTGCTGTTCCTCACGTCTCCGTCCG
GCAAGTACGCGGCCTACTTCGTGCGCACCCACACCGCGCCTGGCGCCGGCGGGCTCGGCGCCGACTTCTGCTACGTCGAG
GTGATGGCCGGTGGTGAG---------------GGCGAAGGCGGCGGCAGCGCTGCCCGCGCGAGCGCGTGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTGAACACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGGGCCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTCCAGACGCTCGAGCTCGTCGACGACGGCGACATGCGC
GTCCGCGACAAGGACGGCGAGCTCGCGTGGCGCGCCAGCGACGAGCCCCGCCACGCGCAGCACTGCGGCGCGCCGGGGTC
CCCGGGCCTCGCGGCCGCGCTGCCGCCCTTCGCCGAGCCCATTGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGG
AGGGCGGCAACGGCCACGCGGCCGAGCTGCCGCAGGCGGCGCAGCTCGGGGACGGGGTTGCTCCAGGGGCCGGAGCCTTT
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGCGTAGGAGGAGTTGCCCCGGGAGCAGGCGGCTTGGGCGACGGGTACGGCTACGGCATTGCA
CCAACGGCGGGAGGCGGCGGAGAGGG------------------------------------------------------
------TGCCGCGGGGGCAGGACCCTTGGGTGACGGCTACGGGATTGCACCGGGCGCCGGG-------------ACAGGA
GCCTTCGATGGTACCGGGGACATGGGCGGACAGGGTGAAGCCGCGACGGCGGCGGGGGCTGCGGGCGGTGTG--------
-----------------GCCGGAGCGGCAGCGTTCGGCAGCCAGCCGCTG---GTGGACAACAGCCCGTACGACAGCGGA
GCCTACAAGGGCAGCCGTGGGGGC---CGTCTGGCAGCGATTGGAACCGTGGTTTTGGTCGGTGCCATTGCCGTGGGTTT
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr2D_789
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------ACCA
CTCCCCTACTCGTGCATGT-GCTATTGGAACGGGTGATGTACTG---ACTCCAGCTCCTGA---TCTAACC-------AC
TCGACATCTCCTACTCCATCACCACCTCGACTACATAAGCACACGCACGCTTCATCATGCTACACCATCCACAACCATAG
CCACAG-------------AGCAGCAAGCACACAAGCAAGAAACACGATCGAGAAGCT--GCCAGCCAGCCATGGAGGTC
ATGTCTTCCATAGCCGTGCTCCTACTCCTCTCCTGCTCGCTCACGGCGGCGACGGCGCCTGCCGGCACGATCGAGCGCGT
GTCCAAGCAGCAGATCCTGGCGAGCATCCCGCCAGGAGGGCACGCCAGCCCGCCCGTGCTGTTCCTCACGTCCCCCTCTG
GCAAGTACGCGGCCTACTTCGTGCGCACCCACACCGCGCCTGGCGCCGGCGGGCTCGGCGCCGACTTTTGCTACGTCGAG
GTGATGGCCGGTGGTGAG---------------GGCGAAGGCGGCGGCAGCGCTACCCACGCGAGCGCGTGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTGAACACGTGCACCCTGCTCTTCTCGTGGCACGGACTGGAGGTGTTCGACGGGGCCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTCCAGACGCTCGAGCTCGTCGACGACGGCGACATGCGC
GTCCGCGACAAGGACGGCGAGCTCGCGTGGCGCGCCAGCGACGAGCCCCGCCACGCGCAGCACTGCGGCGCGCCGGGGTC
CCCGGGCCTCGCGGCCGCGCTGCCGCCCTTCGCCGAGCCCATTGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGG
AGGGCGGCAACGGCCACGCGGCCGAGCTGCCGCAGGCGGCGGGTCTCGGGGACGGGGTTGCTCCAGGGGCCGGA------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr2B_798
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----CTACTCGTGCATGC-AGTATTGGAACGGGTGATGTACTA---ACTCCAGCTCCTGA---TCTAACCACTCGAGAC
TCGACATCTCCTACTCCATCACCACCTCAACTACATAAGCACACGCACGCTTCATCATGCTACACCATCCACAACCACAG
CCACAG-------------AGCAGCAAGCACACAAGCAAGAAACACGATCGAGAAGCT--GCCAGCCAGCCATGGAGGTC
ATGTCATCCATAGCCGTGCTCCTACTCCTCTCCTGCTCGCTCACGGCGGCGACGGCGCCGGCCGGCACGATTGAGCGCGT
GTCCAAGCAGCAGATCCTGGCGAGCATCCCACCAGGAGGGCACGCCAGCCCGCCCGTGCTGTTCCTCACGTCTCCCTCTG
GCAAGTACGCGGCCTACTTCGTGCGCACCCACACCGCGCCAGGCGCCGGCGGGCTTGGCGCCGACTTCTGCTACGTCGAG
GTGATGGCCGGTGGTGAG---------------GGCGAAGGCGGT---AGCGCTGCCCACGCGAGCGCGTGGGAGTCGGA
GTGCCGGCCGGTGAGCACGGTCAACACGTGCACCCTGCTCTTCTCGTGGCACGGGCTGGAGGTGTTCGACGGGGCCGAGG
AGGTGTGGCACGGCGAGACCAACACCGACGGGACCAACTTCCTCCAGACGCTCGAGATCGTCGACGACGGCGACATGCGC
GTCCGCGACAAGGACGGCGAACTCGCGTGGCGCGCCAGCGACGAGCCCCGCCACGCGCAGCACTGCGGCGCGCCGGGGTC
CCCGGGCCTCGCGGCCGCGCTGCCGCCCTTCGCCGAGCCCATTGGCGCGCACAGCAGCAACCTGCCCTTCGGCCAGGTGG
AGGGCGGCAACGGCCACGCGGCCGAGCTACCGCAGGCGGCGGAGCTCGGGGACGGGGTTGCTCCAGGGGCCGGAGCCTTT
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGCGTAGGAGGAGTTGCCCCGGGAGCAGGCGGCTTGGGCGACGGGTACGGCTACGGCATTGCA
CCAACGGCGGGAGGCGGCGGAGGTGTTGCCGCGGGGACAGGAGG------------------------------------
------------------AGGACCCTTGGGTGACGGCTACGGGATTGCACCGGGCGCCGGG-------------ACAGGA
GCCTTCGATGGTACCGGGGACATGGGCGGACAGGGTGCAGCCGCGACGGCGGCGGGGGCTGCGGGCGGTGTG--------
-----------------GCCGGAGCGGCAGCGTTCGGCAGCCAGCCGCTG---GTGGACAACAGCCCCTACGACAGCGGA
GCCTACAAGGGCAGCCGTGGGGCC---CGTCTCGCGGCGATTGGAACCGTGGTTTTCGTCGGTGCCATTGCCGTGGGTTT
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr5D_1518
--------------------------------------------------------------------------------
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----------------------------GGCGGGCCAGCGACGAGCCGCGCCAAGCGCAGCACTGCGG-----CGGGGTC
ACC-GGCCTTGCGGCCGCGCTGCCGC---TCCCCGAGCCCATGGGCACGCACAGCAGCAACCTGCCCTTTGGCCAGGTGC
AGGGCGGCTACGG----------GAGCTGCCGCAGGCAGCGGAGCTCGGGGACGGAGTTGTTCCAGGGGCCGGAGCAGGT
GGCTTGGGCGACGGCTATGG------------------------------------------------------------
---------CATTGCACCAGCATCAGGAGGAGTCGGAGGTGTTGCCCCAGGGGCAGGTGGTTTGGGCGACGGCTACGGCA
TTGCACCAGCGGCAGGAGGCGTCGGAGGTGTTGCCCCAGGGGCAGGTGGCTTGGGCG------ACGGCTACGGCATTGCA
CCGGCGGCAGGAGGCGCCGGAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCGACGGCTACGGCATTGCGCCGACGGCAGA
AGGTGTTGCCGCGGAGGCAGGGACCTTCGGCGACGGCTACGGGATCACACCGGGCACCGGTGCTCTGCACCGGTGCAGGA
GCCTTCGGCGGTGCCAGGGACGTTGCCGAACATGGTGAAGCGGCGACGGCGGC---C------GGCGGTGTT--------
-----------------GCGGGAGTGGCAGGGTTCGGCAGCCAGCCACTG---GTGGACAACAGCCCCTACGACAGTGGA
GCCTACAAGGGCAGCCGTGGGGCC---CCTCTAGCGGCGATCGGAGCCGTGGTGTTTGTCAGCGCCATGGCCGTGGGCTT
CTGA--------TCGGGAAGACGGATCA--GTGGCAGTCTGGATATGCGCTCGTGCGTTTTTCTTTTCA--TGTGT--TG
ATATTAGCCATATATGCTGTGCTTGTGATTGCCAGTGGTGCAAAATTTGAAGCTGTATTTGTGTGATTTGAGTTAAA-CT
CAAAATTTAATGG-AAATGGTTCTGTTCTAATTTCTAACCTGGGTGCTTAATTATCTCCAGAATTGCAATTCG--ATCA-
----AATACTCAAAAAGG-------TAGGTTGCACTTTGTTCATCCGTCGGTGGGTTCAGTTACC--ATTTTATGGATGT
ATATGATGTCCAGATTAAATTTTCAGAAAGAATAGTAATAGACTAAATTCATTTACCATAATCAGAGGCCAATGTATATA
TGATCTCCTCTTGTCCCTACATTTGGCAATGAAACACCTTCAGCTCCGTGAAATTTTACAAGCAAATCATGGGATTCTAG
CAAGCTCC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr5D_1799
--------------------------------------------------------------------------------
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-----------------------------------------------GGCTTGGGCG------ACGGCTACGGCATTGCA
CCGGCAGCAGGAGGCGCCGGAGGAGTTGGCCCGGGGGCAGGTGGCTTGGGCAACAGCTACGGCATTGCGCCGACGGCAGC
AGGTGTTGCCACGGGGGAAGGGCCCTTCGGCGACGGCTACGGGATCGCACCGGGCGTCGAG-------------ACATGA
GCCTTCGATGGTGCAAGGGATGTTGCCGGACATGGTGAAGCGGCGGCGACGGCGGCC------GGCGGTGTC--------
-----------------GCGGGAGTGGCAGGGTTCGGCAGCCAGCCGCTAGTAGTGGACAACAGCCCCTACGACAGTGGA
GCC---AAGGGCAGCCATGGGGCC---CATCTCGCGGCGATTGGAGCTGCGGTGTTTGTCAGCGCCATGGTCGTGGGTTT
CTGA---------CGGGAAGACGAATCA--GTGGCAGTTTGGATGTGTGCGCGTGCGTTTTTCTTTTCA--TGTGTGTTA
ATATTAGCTATGT--GGTGA---TGTGCTTGTGAGTGGTGACAAATTTGAAGCTGTATTTGTGTGATTTGAGTAAAAACT
CAAAATTCAGTGAAAAATGGTTCTGTTCTAAATTGGGTGCACGTGGCT-----------AGAACTGTGATTTCAAATCA-
----AATACTCAAATAGG-------TAGATTCTACTTTGTTCATCCATCGGTGGGTTTAGTTACCCTCTTTTATGGATGT
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>SNPs
----------S--------------------------------------------S-S----S---------------S-
S-----S-------S------S-------------------------------------------SS-------S-----
S--S--------------------S-------------------------------------------------------
--S---S------------------S-----SS------------------S--------------SSS-----------
--------------------------------------------------------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---S----S--SS-----------
-------SSSSSSSSSSSSSSSSSSS------------------------------------------------------
------------------------------------------S--------------SS---------------------
-----------------------------------------------------S-------------------------S
-----SS------------------------S----------S----------S----S---S--------------S--
------------------S-------------------------S--S----S---------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------S-----
--------S-----------------------------------------------------------------------
------S-------------------------------------------------------------------------
---------------------------S---------------------S------------------------------
-------S---------------------------------------------------------------S--------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------SSS-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
-------------------S-----------------------------------------------------------S
SSSS----------------------------------------------------------------------------
--------S--------------------------------------------S--S-----------------------
-S------------------------------------------------------------------------------
--------S--S------------------S--S--------------------S-------S----------------S
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----SS-SSSS--SSSSSS-SS---SSSS-SSSSSSSSSS-SS-
SSSSSSS-SSSSSSSSSSSSSSS--------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_453
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAGGAGGAGGTGGATGAGCT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>reverse_2152
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------AACGGTAGG
AGGTGTTGCC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>forward_457
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGGAGGTGGATGAGCTAGGG-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_2587
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AATTGTGGGTGGTGCAAAATT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
