>input_sequence_58404
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---------------------------------------------------CCTTCCCAATTTGGAAACGGGAGGATTTG
CTCCCCGCGGGAAAGGAGAGGACGCCTCCGACGAGCCGCAGCCTCTCTGGGCA-------GAGGAGGAGCTCGTCCACAC
CCCCGAGCAAGCCTCTCCTCGCCCCGCCGGGGACAACGATGGTAAGGTGGTCGCCGCCGCCACGGCGGGACGTCGAGCTT
TTCCCCTTCCCCTCTTTGGGCGCCCACGACCCCGTCTCACTGTCCCTATTCGTGGCGTGCGTCGTGGCCACCGTGGCGAT
CGCCTCGACCATGTGCTCGGCGTGCGGCCGCAAGCCCAAGGCGGTCAGCCAGGAGCCCGCCGCGGACGCCCAGGCCTCCG
ACGCCTCCGGGAGCCAGGGCGGCGCGGAAGGGGAGGAGGAGGTGGTGACGCTGCCGCCGGAGCTGGCCACGCACGGGCCG
ATCGAGCCGCCGCCGCTGCCCAAAACGGCGTCGCGGCGGAGGCTGTCCGTCTCCATGTCCATGGGCGTGGGCAAAAGCAT
GTCCATGAACGTGGGCAAGAGCCTCGCCAACATCCCGGACAAGATGAAGCTGAGCAAGCTGGAGCCGCGCCACAAGGAAA
AGGACGACCCCGAGGACACGCTGTGGAAGAAGTCCATCATCCTGGGCGGGAAGTGCAAGATCCCCGGGGAGAGGGACGCC
GAGGCCTCCGACCCCGATGCGGCCGCCGACGCCGCGGACGAGATGACCGCCGGCGCCTTCCGCCGGTCCAGCTACTCCCG
GCCCGTGTCCCGGTCCAACTCCTTCTCCGTCCACCAGCCCCTGCCCGAGCCTCCCCCAATGCAATCCTACACTAAATCAT
GAGCAAGGAAGCTACATAACACTCACTGTTTTAAATAGCCCGCTATAGCACGCTATAGCGTTTATAAAAGGTCTTGCGCT
AAGAGACTTTGGTTCAAACAAATAAACAAACATTTTAAATAGCGCGCTATAGCTCCGCTATAGCACGCTATAGCATTTGG
AAGAAGTCCGCCGCTAAAATGCTTAGCGCGCTATTTAAAACTAACAGTATATACAAAC---ATACGTCGTGCGTAGGAGG
AAGAAGCTGTCTGCTATGCTAGTGGTGATGAAGGGCTGCATCCGTCGTGTGGTGTGGTGTCGT-GGCGTACGTGCATTTG
---ATCTTCTTGTTTTTGGCGGATTTCGAGA---------TGAATGCATTGAA---------------------------
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>chr4A_1_TraesCS4A01G402600
GACCTAAAAAGCAAAACTTGTTCAGCATACAACAAACTTAGATATAAAAAAAGGGGGAACTCACAAACCCTAGCCAACAC
ATGCTCGTACAGACACATCTGACCAAGCATCAATCAAAACCCCAACTAGAACTAATCAAAAACACGAGAGACCGAGCATA
TACATACCTCCTAAAGCAGATCTCCTTACGGATTCGACAACGGACACACTGAATCCGAGCACCAGCAAGACCAAAAGACC
TACAAAACCACATCAAACTGACTAGCTCACGCAGATCTATAGAGCAGTAGCAACGGGAAAATCAAAAAGAACAAAAAACA
CAAAGGAAATCGAGCTGGAGCAATACGGGAGAGGAGGAGACAGAGCGCGACGAAGAGGCAGGAGCGTGAGGAGGAGACTG
ACCGCACCAGTGGAGAGTGAGGAAGGGAAAAGGCAAGCGGAGACGGACTCGGTTGGGCCTCGCAGAAAATAACGGGTCGG
GCACCTTAACGGGCACAACAACCAGCCCAGATGCAAAATCGACTGACCAACAAAAACGAGTCAGTTGACAGAACCAAGCA
CAACCCAAGCGCGTTCACACCAAAAAAAGAAAAAACAACACCACGAATCGCAAAGCGCAATCCAACGGAGCAAAAATCGA
CTGACCACAATTGCAAAAACCGGCCGATTGACATGTAGCTATTGTGTACCATATGACGTGCCATTCTGTCTGCCGAGATC
CGTATTCTGCTTACATATCGA----CGTGATCCCGCATTCCG--GTACTCGGTAAACATGAAAAAACTTGGTAACCACAA
TTTT---TCCAGTAGTGTGGTAACTCGTATACTTGCCTATAATTATGGCTAACTTAACAAAATAGATTACACCGGTGCAA
ACCCTATTTTTCTGAAACATGTTTGGGTTGTTTCTTTATCTCTAAAATTAGTTTGG-CCAATTTAAGAACCAAACAAGCC
AGTACAATCCCTCGGCCACACAACGTGAACACCCGAACCGGCCGTTTCCC-CCTTCCCAATTTGGAAACGGGAGGATTTG
CTCCCCGCGGGAAAGGAGAGGACGCCTCCGACGAGCCGCAGCCTCTCTGGGCA-------GAGGAGGAGCTCGTCCACAC
CCCCGAGCAAGCCTCTCCTCGCCCCGCCGGGGACAACGATGGTAAGGTGGTCGCCGCCGCCACGGCGGGACGTCGAGCTT
TTCCCCTTCCCCTCTTTGGGCGCCCACGACCCCGTCTCACTGTCCCTATTCGTGGCGTGCGTCGTGGCCACCGTGGCGAT
CGCCTCGACCATGTGCTCGGCGTGCGGCCGCAAGCCCAAGGCGGTCAGCCAGGAGCCCGCCGCGGACGCCCAGGCCTCCG
ACGCCTCCGGGAGCCAGGGCGGCGCGGAAGGGGAGGAGGAGGTGGTGACGCTGCCGCCGGAGCTGGCCACGCACGGGCCG
ATCGAGCCGCCGCCGCTGCCCAAAACGGCGTCGCGGCGGAGGCTGTCCGTCTCCATGTCCATGGGCGTGGGCAAAAGCAT
GTCCATGAACGTGGGCAAGAGCCTCGCCAACATCCCGGACAAGATGAAGCTGAGCAAGCTGGAGCCGCGCCACAAGGAAA
AGGACGACCCCGAGGACACGCTGTGGAAGAAGTCCATCATCCTGGGCGGGAAGTGCAAGATCCCCGGGGAGAGGGACGCC
GAGGCCTCCGACCCCGATGCGGCCGCCGACGCCGCGGACGAGATGACCGCCGGCGCCTTCCGCCGGTCCAGCTACTCCCG
GCCCGTGTCCCGGTCCAACTCCTTCTCCGTCCACCAGCCCCTGCCCGAGCCTCCCCCAATGCAATCCTACACTAAATCAT
GAGCAAGGAAGCTACATAACACTCACTGTTTTAAATAGCCCGCTATAGCACGCTATAGCGTTTATAAAAGGTCTTGCGCT
AAGAGACTTTGGTTCAAACAAATAAACAAACATTTTAAATAGCGCGCTATAGCTCCGCTATAGCACGCTATAGCATTTGG
AAGAAGTCCGCCGCTAAAATGCTTAGCGCGCTATTTAAAACTAACAGTATATACAAAC---ATACGTCGTGCGTAGGAGG
AAGAAGCTGTCTGCTATGCTAGTGGTGATGAAGGGCTGCATCCGTCGTGTGGTGTGGTGTCGT-GGCGTACGTGCATTTG
---ATCTTCTTGTTTTTGGCGGATTTCGAGATGAATGCATTGAATGCATGGGTGATCGGTTGATCTTTCGAACCAACTGA
GGGGGGTGCGGTTTGTGTTGGTGATAATTACATG-----TTCTATATTTTCTGACTG-----------------------
---CAATAAGGGGTATGCTTCAATTTTACAATGCTCTTGATGCTTCCACAGCTACTACTTGCTCCCTCCATGCAAGTACA
ATTGGGGGAAATTCTCAGGCTTCTGATTGGTCTATGTTTTTTTCTTTCTGAAATGGCAAGATTAGTAAAACGCCACACAA
GATTCAGCAACAAACCCGATGTCAAGGCACAGAGAATGCACACACAAGACGCAACGCACGTGGACCAACAAAAAGAATTA
AACAACATCGTCTTCGACGGA-GCACCACCTACACCCC-CTTAGCATCATGGCAAATGTGCACGTTCTGAAACAATGCCT
CCAATCAAGAAATGAAGCCACGAATCAACACATCTACTGGCGTTGCCTGAGCTGTTATATGCAACTCATAGGTTGTTAGC
CCCCCG-------GAGAAGGATCCAGAATAGCAGTTTTGCTAGAACCTCAACATGA-CCCCCTCAAGAAAAA--AGAGTT
ATGCTTAAAGACGCCAACATCACTAGAATCCCTGGTTAGGGTTTTCACCAACGGTGGATACAACACCACGCTCATCGATT
CACGCCAAAGACCAAACATCCCAGGGCAACCATCCATCTCTAAGTTATCCATAAAAATCTTGGATACGATGTTTTGACAC
CATCGAACAAAACCATAAACCACTGGTGTGGGAGAAGGAACACATGAGGACCACCGGGTGCATGATCCAAATTTGATCTT
TGATAAATTGTCGTGACGTGGCCCACCATGTTGGCAGGATATAGGGGAACTAGGGGGACGTGGTCGAAAATCTACTGCTA
TCTATGTGTGCTCCTGGGTAAAACCATGCACGATGTTGCACACGCCTTCAGGTAGAGATGTCACCACACTGTTGACCTAA
ATAGGAACAATGTCGTGCTAATAGATACTTCAAAGAATGTAGCTTGG
>chr7A_687
TACCATGTGAT---------------------------------------------------------------------
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---------------------------------------------------------GTGCCATTCTGTCTGTCGAGATC
CGTACTCGGCTTACATATCATTTGCCGCGATCCCGCCGAGATCCGTACTCGGCAAACATGAAAAAACTCGGTAACCACCA
CAATTTCTCCAGTAGTGTGGTAAGTTGTGTACTTGCCTATAATTATGGCTAAGTTGATAAAATAGATTACACCGGTGCAA
GCCCTATTTTTCTCAAACATGTTTGGGTTGTGTTTTTATCTCTAAAATTAGTTTTGCCCAGTTTAAGAG----GCAAACC
AGTACAATCCCTCGGCCACACAGCCCTT------------------------CTTCCCAATTTGGAAACGGGAGGCTTTG
CTCCCCGCGGGAAA-GAGAGGACGCCTCCGACGAGCAGCAGCCTCTCTCGGGCGGAGGAGGAGGAGGAGCTCGTCCACAC
CCCCGAGCAAGCCTCTCCTCGCCCCGCCGGGGACGACGATGGTGAGGTGGTCGCCGCCGCCGCCGCGGGACCTCGAGCTT
TTCCCCTTCCCCTCTCTGGGCGGCCACGACCCCGTCTCGCTCTCCCTGTTGGTGGCGTGCGTCGCGGCCACCGTGGCGAT
CGCCTCGACCATGTGCTCGGCGTGCGGCCGCAAGCCCAAGGCGGTCAGCCAGGAGCCCGCCGCGGACGCCCAGGCCTCCG
ACGCCTCCGGGAGCCAGGGCGGCGCGGAAGGGGAGGAGGAGGTGGTGACGCTGCCGCCGGAGCTGGCCACGCACGGGCCG
ATCGAGCCGCCGCTGCTGCCGAAGACGGCGTCGCGGCGGAAGCTGTCCGTGTCCATGTCCATGGGCGTGGGCAAGAGCAT
GTCCATGAAAGTGGGCAAGAGCCTCGCCAACATCCCGGACAAGATGAAGCTGAGCAAGCTGGAGCCGCGCCACAAGGAGA
AGGACGACCCCGAGGACACGCTGTGGAAGAAGTCCATCATCCTCGGCGGCAAGTGCAAGATCCCCGGCGAGAGGGACGCC
GAGGCCGCCGACCCCGACGCGGCCGCCGACGCCGCGGACGAGATGACCTTCGGCGCCTTCCGCCGGCCCAGCTACTCCCG
GCCCGTGTCCCGCTCCAACTCCTTCTCCGTCCACCAGCCCCTGCCCGAGCCTCCCCCAATGCAATCCTACTCTAAATCTT
GAGCAAGGAAGCTACAT---------------------------------------------------------------
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-------------------------------------------ACAGTACATACATACGTGATACGTCGTGCGTAGGAGG
AAGAAGCTGTCTGCTATGCTAGTGGTGATGAAGGGCTGCATCCGTCGTGTGGTGTGGCGTCGTGGGCGTACGTGCATTTG
ATCATCTTCTTGTTTTCGGCGGATTTCGGGA---------TGAATGCATGGGTGATCGGTTGATCTTTCGAACCAAGTGA
GGGGGGTGCGGTTTGTGTTGGTGATAATTACATTACATATTCTATATTTTTCTGACTGCAAATGTTGATCATCCTAATAA
ACACAATAAGGGGTATGCTTCAATTTTACAATGCTCTTGATGCTTCCACAGCTACTACCTGCTTCATCCATGCAAGTACA
ATTGGGGGAAATTTCCAGGGTTCTCATTGGTCTATTTTTTTTGTTTTTTGAAATGACGAGATTATCAAAACGTCACACGG
GATTCAGCAAC-AACACGATGACAAGGCACGGAGAATGCACACGGTCA--------CACGTGGACCAACACAAGAGATTT
ATAACAATTGTCTTCGATGGAGGCACGACCTACACCCCTCTTAGAATCATGGCAAATTCGCACGTTCCGGAACGATGCCT
CCAATGAAGAAATGAAGATACGAATTGACGCATCTACCGGCGTTGCCTGAACTGCCATAAGTAGTTCATAGGTTTTTACC
CCCTCCCCCACGCGAAAAGGACCCAAAGTGGCAGCTTTTCTAGAACCTCAATAGGACCCCTCTCAAGAAAGGAGAGAGTG
ATGCCCAAAGACGCACGCATCACTAGAATCCTAGGTCTAGGTTTTCACCGAAGGTTGATGCAACGTTATACTCATAGATT
CACACCAGATACCAAACATCCCAGGGCAGCCATCCATTTCTAAATTATCTATTAAAATCTCGGATACGATGTT-------
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>chr7D_829
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-------------------------------------TATAATTACGGCTAAACTGACAAAA--GATTACGCCGGTGCAA
GCCCTATTTTTCTCCAACATGTTTAGGTTGTCTTTTTATCTCTAAAATTAGTTTTGCCCAATTTAAGAG----ACAAACC
AGTACAATCCCTCGGCCACACAGCCTGAACGCCT-AACCGGCCGTTTCCCCCCTTCCCAATTTGGAAACGGGAGGCTTTG
CTCCCCGCGGGAAA-GAGAGGACGCCTCCGACGAGCCGCAGCCTCTCTCGGGC---GGAGGAGGAGGAGCTCGTCCACAC
CCCCGAGCAAGCCTCTCCTCGCCCCGCCGGGGACGACGATGGTAAGGTGGTCGCCGCCGCCGCCGCGGGACGTCGAGCTT
TTCCCCTTCCCCTCTCTGGGCGGCCACGACCCCGTCTCGCTGTCCCTGTTCGTGGCGTGCGTCGCGGCCACCGTGGCGAT
CGCCTCGACCATGTGTTCGGCGTGCGGCCGCAAGCCCAAGGCGGTCAGCCAGGAGCCCGCCGCGGACGCCCAGGCCTCCG
ACGCCTCCGGGAGCCAGGGCGGCGCGGAAGGGGAGGAGGAGGTGGTGACGCTGCCGCCGCAGCTGGCCACGCACGGGCCG
ATCGAGCCGCCGCCGCTGCCCAAAACGACGTCGCGGCGGAAGCTGTCCGTGTCCATGTCCATGGGCGTGGGCAAGAGCAT
GTCCATGAACGTGGGCAAGAGCCTCGCCAACATCCCGGACAAGATGAAGCTGAGCAAGCTGGAGCCGCGCCACAAGGAAA
AGGACGACCCCGAGGACACGCTGTGGAAGAAGTCCATCATCCTGGGCGGGAAGTGCAAGATCCCCGGGGAGAGGGACGCC
GAGGCCGCCGACCCCGACGCGGCCGCCGACGCCGCGGACGAGATGACCGTCGGCGCCTTCCGCCGGTCCAGCTACTCCCG
GCCCGTGTCCCGGTCCAACTCCTTCTCCGTCCACCAGCCCCTGCCCGAGCCTCCCCCAATGCAATCCTACTATAAATCGT
GAGCAAGGAAGCTGCAT---------------------------------------------------------------
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-------------------------------------------GCAGTGCATACATAC---ATACGTCGTGCGTAGGAGG
AAGAAGCTGTCTGCTATGCTAGTGGTGATGAAGGGCTGCATCCATCGTG---------------GGCGTACGTGCATTTG
ATCATCTTCTTGTTTTTGGCGGATTTCGAGA---------TGAATGCATGGGTGATCGGTTGATCTTTCGAACAAGTGAG
GGGGGGTGCGGATTGTGTTGGTGATAATTACATTACATATTCTATATTTTCTGGCTG-----------------------
---CAA--------------------------------------------------------------------------
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>SNPs
S---SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-------
----S--S-----------SS------S--------SSSSSS----------S---------------S---------S-
SSS--------------------S-S--S-----------------------S--S------------------------
S------------S-----------------S-S--------------------S-------------SSSSS----S--
----------------------S-S-----S--SS----------------------------------------S----
--------------S---------------------------------S--SS---------------------------
----------------------------------S--------------------------S-S----------------
---------------S------S---------------S--------S----------------S---------------
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----------------------------------------S---------S-----------------------S-----
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------S----------S-------------------------------S------------------------------
----------------------------------------------------------------------S-------S-
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----S------------------------
---------------------------------------------------------S----------------------
-------------------------------SSSSSSSSS------------------------------------S---
---------------------------------S-------------------S--------------------------
----------------------------------------------------------S----S-S--------------
-------------SS----S----S----------S------SS---S-------S-S------SS------S-----SS
-----------S---S-----S--------S------------SSSSSSSSSSSSS--------------S--SSS---S
-SS-SS--S--------S--------S-----------------S------------SS--------S-S---S------
-----S-----------SS------SS--S-------S------------S---SS---S-S-SS---------S---S-
---S-S---------S-----S---S-S-S----S---S------------S-S------S---------SS-------S
----SS--------SSS--------------SS---SSS----------S-S---S---S----SSS-SS-----S----
---S---S-S------------------S--------S-----S-----S--S-------S------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_355
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---------------TGGAGCAATACGGGAGAGGA---------------------------------------------
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>reverse_1993
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------------------------------------------------------------------------GCATTTGG
AAGAAGTCCGCC--------------------------------------------------------------------
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>forward_567
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-------------------------------------------------------------------ACAGAACCAAGCA
CAACCCA-------------------------------------------------------------------------
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>reverse_2492
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-----------AAACCCGATGTCAAGGCACA-------------------------------------------------
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