>input_sequence_58401
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-------------------------ATGTTCCGTCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGAGG
CCCTGACCGCCGTGCCGACCCTGATCCCTCGGTCTGCCGCCGGGGGATACTTCGACGGTGGCAA---TGTCGGTGGAGCG
TTCCCTCCCTTCGCC------GCCACCGCCTCGTCTCCGCCGTCGTCCTACTCGTCGTCGCTCCAGTCGTCGTACTACA-
--ACAACATCCACAGGAGCATCAGCGCGCACTCGCTCCCGCTCCCGCTCCACATCCAGCTCGGTGATAACCTCAACGGCG
GCGGTGCATTCTTCTCGTCCTCGTCCTCGTCCCCTCACCAGCAGCTGTCTTTGCCACCCATGTCCTCCTCCCCGTCCTCC
TCCTGCGGCGACTTGTACGATTTCAGCAGCTCGGCTTGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTAC-
---GGCGCCAGAATCCGGTAACTTGCACAATTGCGATCGATCGGGCTGTCTGGAGATCGCAATTGAGCTGTGGA-CTCTT
GTTTTCCTTGCCTTTTGCTGACAAAACTAATGAAGCAGGGGATGAACGGATCATCGCCGGTGCCGTCAGGCGACAGCTGC
GGCCAAGACGCCGGAGGAGGGCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCAGAAGAGAGGAAGGAGCGGGTGGAGCG
ATATCGCTTGAAACGCCACCAGAGGAACTTCACCAAAAAAATCACCGTAAGTACCATCTCGATTCTCCATCAACACCCTG
CAAATGCACACCGTCTCTTGCCACTAACGTCTTGCCATCATTGGCTCTGG-TCCGCCAGTACGCGTGCAGGAAGTCTCTG
GCCGACAGCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTC
CGACAACAGCTACGACTACTGCGGGTACAGCGAGCCCAGCAACCAGAGCACCGGGAACAGCCGCTACCACGGCCAGCAGC
ATATCAAGGACGACAGCGTCTGCAACGGCACCGCCGCAGCAGCGTTCGCTGGAGCCGGCGACAATGGCGACTGGTGGTGG
CGGGCACCGGGGGCGGAGGGGCCGCGGCAGGTCGGCTTCGACGTCGACGAGGAGCTGTGGGCCACCCTGGGCGACATGTT
GTCCGTGAACCTGGCCTCGTAG----------------------------------------------------------
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>chr3D_1_TraesCS3D01G348100
CGAGCAATTTCTTTTGGTTTTCAAGTAAGAGCATATTGCAACGAGTAGCACCTTATGGTATAATAGA-------------
AGGCCAGACAACCTTTATAGGGACTATTGGCTATGGCACACAATTCAGCAGTACGACAAGTCCTTGATGCCCTTCAGTCT
GGACGATCTTGTAATGGTAGTCGGCTTATATGGTAGAATGGGCATAAATGGCACTCTCTCTTCACGGGATATGGCTTTT-
AAGGTTTTTATCATCAAATTTCCACAGTAATGTATTTTTTTTCCACAGTAATATATTTGTTCAAAAATATACTTTCGTG-
-CGATCAGTCTGAATAGTTTGTGCACATCAAGGAAGCTCGATCATTAAAATCGTGCAATGTCATGCGGTCCATTCTTTGT
TGTTATGGTGAAAAAAATCAACCCGTCGCCTTTTT--CTCATGGAAAAGGAGGGTTTTCCCCAGCCTCCGCATAGTTGAT
GCATGCTTTTGGAGAAAACGGGGTTTTCCCTTGATTTCCATTACTAGAACCCAGGTAGAAGTTCCTGCAAAACCACCAGC
TTATGGTTGGTGCATGTATTCACATCACTTACAGTCATCTTCCTGACCTTCCACTCCTCCAGTGGTAGGGGGATGTGACG
GATCCCTCCTCACGTACGCCATCCATCCAATGATCCAAGCCTGATGATTCGACTGCTTAGGCGACTTGCCAAACATTAGC
GGTAAACTGTTATCATGCGGCATCGCCTGGACTAGTCTTTTTTACTGCAGCGGGAGGGAATAGTGCGCGTGACCCT----
---------ACCCAACCCTACCCTGCATCTTTCTTT-CAGTGCACAACAGCACTACTAGCT-------------------
----CTGTAGTGTACGCGCCAAGCCCAGACCCTTCTTATACCCGCGT-CCCTCCACTTCAACCTCCCAGCAAA-----AC
ACACGCACACGCACACAGTCCCCGCACGAGCTAAAGGCACCCACAGGCCTTTTCATTTCCACGTCCGGAGGAAGAAAGTC
CGTCCGT----CCGGCCGGCCGGAAATGTTCCGTCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGAGG
CCCTGACCGCCGTGCCGACCCTGATCCCTCGGTCTGCCGCCGGGGGATACTTCGACGGTGGCAA---TGTCGGTGGAGCG
TTCCCTCCCTTCGCC------GCCACCGCCTCGTCTCCGCCGTCGTCCTACTCGTCGTCGCTCCAGTCGTCGTACTACA-
--ACAACATCCACAGGAGCATCAGCGCGCACTCGCTCCCGCTCCCGCTCCACATCCAGCTCGGTGATAACCTCAACGGCG
GCGGTGCATTCTTCTCGTCCTCGTCCTCGTCCCCTCACCAGCAGCTGTCTTTGCCACCCATGTCCTCCTCCCCGTCCTCC
TCCTGCGGCGACTTGTACGATTTCAGCAGCTCGGCTTGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTAC-
---GGCGCCAGAATCCGGTAACTTGCACAATTGCGATCGATCGGGCTGTCTGGAGATCGCAATTGAGCTGTGGA-CTCTT
GTTTTCCTTGCCTTTTGCTGACAAAACTAATGAAGCAGGGGATGAACGGATCATCGCCGGTGCCGTCAGGCGACAGCTGC
GGCCAAGACGCCGGAGGAGGGCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCAGAAGAGAGGAAGGAGCGGGTGGAGCG
ATATCGCTTGAAACGCCACCAGAGGAACTTCACCAAAAAAATCACCGTAAGTACCATCTCGATTCTCCATCAACACCCTG
CAAATGCACACCGTCTCTTGCCACTAACGTCTTGCCATCATTGGCTCTGG-TCCGCCAGTACGCGTGCAGGAAGTCTCTG
GCCGACAGCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTC
CGACAACAGCTACGACTACTGCGGGTACAGCGAGCCCAGCAACCAGAGCACCGGGAACAGCCGCTACCACGGCCAGCAGC
ATATCAAGGACGACAGCGTCTGCAACGGCACCGCCGCAGCAGCGTTCGCTGGAGCCGGCGACAATGGCGACTGGTGGTGG
CGGGCACCGGGGGCGGAGGGGCCGCGGCAGGTCGGCTTCGACGTCGACGAGGAGCTGTGGGCCACCCTGGGCGACATGTT
GTCCGTGAACCTGGCCTCGTAGTAGGCGATCGACGGC---ACGGCATGGAAGGGTCGGTGGAGCCGTTAGTTGTTTTTGG
TGGGCTCCGTCCGGCGCACCAGACGGCAGCACTACCATAGCCCGATCGGTCAGGTCAGGGTGGCGGCTCGGCCAGCTGCC
GTGTGCGCGGCACAGTGCAGCCATGGAGG-------TCAGAGTGGCGCCCGTTGACCTTGTCCCCCGGGGCTGTATTATT
GTAACCTTTAGCCAGAAACATCATGAGAGTCGGAGACAAAAG----GAGAGAGAGACCGATCGCCTTCCTCGTGCTAGAC
TTTGAGAACAACTTGTGTGTGTTCCGTGAGTTCCCGGTTACTTCCATGTATAAAAAAGCTTGAAAAATTATGTGCCCCAC
TCCCGGGTCCAAGTGCATGCTCCTCTGTCGTCCAAAACTCACCTGAA-----------TTCTCAGTGCTGCTTGCCGGCT
CCCCTGCAACCTTCCGTGCTCGTTTTGTGTTGCCCATTTTCCTTCTCCTCC--GACTACACTCAACTGTTGTCGATCTCC
CAGTGGCAGGGGGGCACCTGTTTGTAACAAAGTCCACGCACTACATGGGCCATGGCCAGTCAGCGACCGTGACAGGACAA
GACACGACACGACGCTTCTGCATGCAGTTCGCGCGCATTTCTTTCAGCTCACACTAGCGGCTTGCCCGACCCGGCCGCGT
ACGTGGTTGGGTGGGGTTAGGC----TGGCCGTTCCGTCGTCGTC----------GG----------AGATGGATCGATC
GCAACGGCGATGGGAGGTCAAAGGGGTACGTGCGTCCGGATGGATCGCCGTCTCATCGCCG--------GAGAGCGCGAG
GCGCCCGTGACTGACGCGCAACCATCTCCATCTCCTCCGTGGCGACATCTACCTCAGCTTTTTCACGAGGGGTTAATGGC
CGCTTCTCGGGCCTTCTCATTGGCCCTGCCGCACGCATGTGAT----------CAGTCCCCGATTTGGTTAGCTGTTCGT
TCGCA----GCCGGGTCAGCTCAGCTCGTGCGCGCGACACATGAATTTCACCGGG
>chr3B_1
CGAGCAATTTCTTTTGGTTTTCAAGTAAGAGCATATTGCAACGAGTAGCACCTTTCATTCACATATAATGATAAAAATAG
AAGCCAGGCAACCTTTTTAGGGACTATTGGCTATGCCACACAATTCAGCAGTACGACAAGTCCTTGATGCTCTTCAGTCT
GGACGATCTTGTAATGGTAGTCGGCTTATATGGTAGAATGGGCAAAAATGGCACCATCTCTTCACGGAATATGGCTTTT-
AAGGCTTTTATCATCAAATTTT---------------------CACAGTAATATATTTGTTCAAAAATACACTTTCGTGC
GCGATCAATCTGAATAGTTTGTGCACATCAAGGAAGCTCGACCATCAAAATTGTGCAATTTCATGTAGGCTGTTCTTTGT
TGGTCCGGTG--AAAAATCAACCCATCGCCTTTTTTTCTCATCGGAAAGAAGGGTCTTCTCCGGCCTCCGCATAGTTGCT
GCATGTTTTTGGAGAAAACGGGGGTTTCCCCTGATTTCCATTGCTGGAAACCAGATGGAAGTTCTTAC-AAACCACCAGC
GTACAGTTGGTGCTTGTATTCACATCACTCATAGTCGTCTTCGTAACCTTCCACTCTTCCAGTGGTAGGGGGATGTGACG
GATCCCTCTTCACGTACGCCATCCATCTAAAAGCC---------TGATTCGACTGCTTAGGCGACTTGCCAAACATTAGC
GGTAAACAGTTATCATGCGGCATCGCCTGGATTAGTCTTTTTTAC------------------TGCAGGGGGAGAGAATA
GTGCGCGTGACCCTACCCTACCCTGCATCTTTCTTTTCAGTGCACAACAGCAGCACCGCTCGGGCGTGCACTAGTAG---
----CTGTAGTGTACGCGCCAAGCCCCGACCCTTCTTATACCCACGCCCCCTCCACTTCAACCTCCCAGCAAA-----AC
ACACACGCACGCACACAGTCCCCGCACGAGCTGAAGGCACCCACAGGGCTTTTCATTTCCACGTACAGGGGAAGAAAGAA
A--------GCCCGTCCGGCCGGAAATGTTCCGCCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGAGG
CCCTGCCCGCAGTGCCGACCCTGATCCCTCGCTCTGCCGCCGGGGGATACTTCGACGGTGGCAA---TGTCGGTGGAGTG
TTCCCTCCCTTCGCC------G---CCGCCTCGTCTCCGCCGTCATCCTACTCCTCGTCG---------------TACT-
--ACAACATCCATCGCAGCATCAGCGCGCACTCGCTGCCGCTCCCGCTCCACATCCAGCTCGGCGACAACTTCAACGGCG
GCGGCGCATTCTTCTCGTCCTCGTCCCCGTCCCCTCACCAGCAGCTGTCTTTGCCGCCCATGTCCTCCTCCCCGTCCTCC
TCCTGCGGCGATCTGTATGATTTCAGCAGCTCCGCATGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTACC
ACGCGCGCCACAACCCCATCACTTGCACAATTG----CGATCAGGCTGTGTGGAGAGTGAAATCAAGCTGATCATCTGTT
GTCTTCCTTCCCTCGTGCTGACAAAACTAATGAAGCAGGGGATGAACGGGTCATCGCCGGTGCCGTCAGGCGACGGCTGC
GGCCAAGACGCCGGAGGAGGCCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCTGAAGAGCGCAAGGAGCGGGTAGAGAG
ATATCGCTTAAAACGCCACCAGAGGAACTTCACCAAAAAAATCACCGTAAGTACCACCCCGAT-CTCCATCAG-ACCCTG
CAAATGCACACCGTCTCTTGCCACTAACGTCTTGCCATCATTCGCTCTGGTTCCGCCAGTACGCGTGCAGGAAGTCGCTG
GCCGACAGCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTC
CGATAACAGCTATGACTATTGCGGCTACAGCGAGCCCAGCAACCAGAGCACCGGGAACAGCCGCTACCACGGCCAGCAGC
ATATCAAGGACGACAGAGTCTGCAACGGTGCCGCCGCAGCAGCGTTCGCTGGAGTCAGCGACAATGGCGACTGGTGGTGG
CGGGCTCCGGGGGCGGAGGGGCCGCGGCAGGTCGGCTTCGACGTCGACGAGGAGCTGTGGGCCACCCTGGGCGACATGCT
GTCCGTGAACCTGGCGTCGTAGTAGGCGATCGGTGGATCGACGGCATGGATGGGTCGGTGGAGCCGTTAGTGGTTTTTGG
TGGGCTCCGTCCGACGCACCAGACGGCAGCACTACCATAGCCCGATCGGTCAGGTCAGGGTGGCGGCTCGGCCAGCTGCC
GTGTGCGCGGCACAGTGCAGCCATGGAGG-------TCAGAGTGGCGCCCGTTGACCTTGTCCCCCGGGGTTGTATTATT
GTAACCTTTAGCCAGAAACATCATGAGAGTCGGAGACAAAAG----GAGAG----ACCGATCGCCTTCCTCGTGTTAGAC
TTTGAGAACAACTTGTGTGTGTTCCGTGAGTTCCCGGTTACTTCCATGTATAAAAAAGCTTGAAAAATTATCTGTCCCAC
TCCCGGGTCCAAGTGCATGCTCCTCTGTCGTCCAAAACACCCCTGGA-----------TCCTCAGTGCTGCCTGCCGGCT
CCCCTGCAACCTTCCGTGCTCGTTTTGTTTTGCC-ATTTTCCTTCTCCCCTGCG----------ACTGTTGTCGATCTCC
CAGTGGCAGGGGG-CACCTGTTTGTAACAAAGTCCACGCACTACATGGGCCATGGCCAGTCAGTGA-CGTGACAGGACAA
GACACGACACGACGCTTCTGCATGCAGTCCGCGCGCA----TTTCAGCTCACACTACCGGCTTGCCCAGCCCGGCCGCGT
ACGTGGTTGGGTGGGGTTGGGC----TGGCTGTTCCGTCCTCGTCGTCGTCGCGGGG----------AGATGGATCGATC
GCAACGGCGATGGGAGGTCAAAGGGGTACGTGCGTGCGGATGGATCGCCGTCTCATCTCATCGCCAAGAGAG---GCGAG
GCGCCCGTGACTGACGCGCAACCATCTCCATCTCCTCCGTGGCGACATCTACCTCAGCTTTTTCACGAGCGGTTAATGGC
CGCTTCTCGGGCCTTCTCATTGGCCCTGCGGTACGCATGTGAACCGCCCGAGCCAGTCCCCGAGTTGGTTAGCTGTTCGT
TCGCA----GCCGGGTCAGCTCAGC------------------------------
>chr3A_1
CGAGCAATTTCTTTTGGTTTTCAAGTAAGAGCATATTGCAACGAGTAGCACCTTTCATTCATATATTGATAGT-AAATAG
AGGCCAGACAGCCTTTTTAGGGACTATTGCCTATGGCACACAATTCAGCAGTACGACAAGTCCTTGATGCTCTTCAGTCT
GGACGATCTTGTAATGGTAGTCGGCTTACATGGTAGAATGGGCATAATTGGCACTCTCTCTTCACGGAATATGGCTTTTA
AAGGTTTTTACCATCAAATTTC---------------------CACAGTAAAATATTTGTTCGAAAATATACTTTCGT--
GCGATCAGTCTGAATAGTTTGTGCACATTAAGGAAGCTCGACCATCAAAATTGTGCAATCTCATGTAGGATGTTCTTTGT
TGGTCCGGTG--AAAAATCAACCCGTCGCCTTTTCC-CTCTTCGAAAAGGAGGGTTTTC--CGGCCACCGCATAGTTGAT
GCATGTTTTTGGAGAAAACGGGGTTTTCCCCTGATTTCCATTACTAGACCCCAGATAGAAATTCTTAC-AAACCACCAGC
ATACAGTTGGTGCATGTATTCACATCACTCACAGTCACCTTCCCAACCTTCCACTCTTCCAGTGGCAGGGGGATGTGACG
GATCCCTCTTCACGTACACCATCTATCCATCT----AAGCCTGATGATTCGACTGCTCAGGCGACTTGCCAAACATTAGC
GATAAACGGTTATCATGGGGCATGGCCTGGATTGGTCTTTTTTAC------------------TGCGCGTGACCCT----
---------ACCCAACCCAACCCTGCATCGTTCTTTTCGGTGCACAACAGCACCGCCGCTCGGGCGTGCACTAGTAGCTG
TAGGCTGTAGTGTACGCGCCAAGCCCCGACCCTTCTTATACCCACG-CCCCTCCACTTCAACCTCCCAGCAAACACGCAC
ACGCACACACGCACACAGTCCCCGCACGAGCTAAAGGCACCCACAGGGCTTTTGATTTCCACGTCCGGAGGAAGAAAGTC
CGTCCGTCCGCCCGTCCGGCCGGAAATGTTCCGTCATTCCTCGTCGGCGCCTTCGTACGGCGACGCCTACATGCAGGCGG
CCCTGGCCGCCGTCCCCACCCAGATCCCTCGCTCTGCCGCCGGGGGATACTATGACAGCGGCAATGTTGTCAATGGCGCG
TTCCATCCCTTCGCCGCCACCG---CCGCCTCGTCTCCGCCGTCGTCCTACTCCTCGTCG---------------TACTA
CAACAACATCCATAGGAGCATCAGCGCGCACTCGCTCCCGCTCCCGCTCCACATCCAGCTCGGCGACAACCTCGGCGGCG
GCGGCGCATTCTTCTCGTCCTCGTCCCCGTCCCCTCACCAGCAGCTGTCTTTGCCTCCCATGTCCTCCTCCCCGTCCTCC
TCCTGCGGCGATCTGTACGATTTCAGCAGCTCCGCATGCACAGTCCGCCGCGTCTTCAGCACCGGCGATCTCCAGGTAC-
---CGCGCCACAGCCCTGGAACTTACACAATTGTGATCGATCGGGCTGTCTGGAGATTGCAATTGAGCTGTCGA-CTGTT
GTTTTCCTTGCCTTTTGCTGACAAAACTAATGAAGCAGGGGATGAACGGGTCATCGCCGGTGCCGTCGGGCGACGGCTGC
GGCCAAGACGCCGGAGGAGGGCCGTTCTCGCAGAAGGTCGGGCGATACAGCGCAGAAGAGAGGAAGGAGCGGGTGCAGCG
ATATCGCCTGAAACGGCACCAGCGAAACTTCACCAAAAAAATCACCGTACGTACCATCCCGAT-CTCCATCAACACCCTG
CAAATGCACGCCGTCTCTTGCCACTAACGTCTTGCCATCATTGGCTCTGGTTCCGGCAGTACGCGTGCAGGAAGTCGCTG
GCCGACAGCCGGCCGAGGGTGAAGGGCCGGTTCGCGAGGAACGGCGAGGCGGAGGCGGAGACCGACGACCGGGAGGCGTC
CGACAACAGCTACGACTACTGCGGTTACAGCGATCCCAGCAACCAGAGCACGGGGAACAGCCGCTACCACGGCCAGCAGC
ATGTCAAGGACGACAGCGTCTGCAACGGCGCCGCCGCAGCAGCGTTCGCCGGAGCCGGTGACAATGGCGACTGGTGGTGG
CGGGCGCCGGGGGCAGAGGGGCAGCGGCAGGCCGGCTTCGACGTCGACGAGGAGCTCTGGGCCACCCTGGGCGACATGCT
GTCCGTGAACCTGGCCTCGTAGTAGGCGATCGACGGC---ACGGCATGTAAGGGTCGGTGGAGCCGTTAGTGGTTTTTGG
TGGGGGCCGTCCGGCGCACCAGACGGCACTATTATAGC-------TCGGTCAGGTCAGGGTGGCGGCTCGGCTGGCCGCC
GTGTGCGCGGCACAGTGCAGCCATGGAGGGGCGAGGTCAGAGTGGCGCCCGTTGACCTTGTCCCCCGGGGCTGTATTATT
GTAACCTTTAGCCAGAAACATCATGAGAGTCGGAGACAAAAGGAGAGAGAG----ACCGATCGCCTTCCTCGTGCTAGAC
TTTGAGAACAACCTGTGTGTGTTCCGTGAGTTCCCGGTTACTTCCATGTACAAAAAAGCTTGAAAAATTATCTGCCCCAC
TCCCGAGTCCAAGTGCATGCCCCTCTGTCGTCCAAAGCACCCCTGAATCCTCACCTCTTCCTCAGTGCTGCCTGCCGGCT
CCCCTGCGACCTTCCGTGCTCGTTTTGTTTCGCCCGTTTTCCTTCTCCTCTGAGACTACACTCAACCGTTGTCGACCTCC
CAGTGGCACGGGG-CACCTGTTTTTAACAAAGTCCACGCGCTACATGGGCCATGGCCAGCCAGTGA-CGTGACAGGACAA
GACACGGCACGACGCTTATGCATGCAGTTCGCGCGCA----TTTCAGCTC------------TGCCCAGCCCGGCCGCGT
ACGTGGTTGGGTGGGGTTGGGCTGGCTGGCTGTTCCGTCGCCGTCGTCGTCGTCGTCGCGGGGAGATAGATCGGTCGACC
GCAACGGCGATGGGAGGTCAAAGGGGTACGTGCGTGCGGACGGATCGCCGTCTCATCGCCG--------GAG---GCGAG
GCGCCCGTGACTGACGCGCAACCATCTCCATCTCCTCCGTGGCGACATCTACCTCAGCTTTTTCACGAGGGGTTAATGGC
CGCTTCTCGGGCCTTCTCATTGGCCCTGCCGCACGCATGTGAT----------CAGTCCCCGAGTTGGTTAGCTGTTCGC
TCGCAGCGAGCCGGGTCAGCTCAGCTCGTGCGCGCAGCACATGAATTTCACCGGG
>SNPs
------------------------------------------------------SSSS-SSS---S--------------
----------------S-----------------------------------------------------S---------
-------------------------------------------------------------------S------------
----------------------SSSSSSSSSSSSSSSSSSSSS-------------------------------------
-----------------------------------------S---S-----S-------S-----SS-S-SS--------
--S-SS----SS------------------------------S----------------S--S-----------------
-----S------------------------S-----------------------S---------S-S-S-----------
S--SS------------------------S--------------S-----------S-----------------------
--------S---------------------SSSS-S--------------------------------------------
-------S-----------------------S-------------SSSSSSSSSSSSSSSSSS-----------------
-----------------------------------------------------S--SSSSS-------------------
--------------------------S----------------S--S---------------------------------
----S------------------------------------------S--------------------------------
--------------S-----------------------------------------------------------------
-----S-------------------------S------------------------------------------------
----------------------SSS----------------------------S------SSSSSSSSSSSSSSS---S-
------------S--------------------------------------------------S--S-------------
----S---------------------S----------------------------S------------------------
-----------SS-------------------S--S--------------------------------------------
---S------S--S--S----------------S-----------------------S-------------S-----S--
-------------------------------------------------S------------------------S-----
--------------------------------------------------------------------------------
----------------------------------------------------------S----S----------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-----------------------------S--------------------------------------------------
-----S------------------------------------------------------------------------S-
-----------------------------------------------------------------------S--------
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---------------------------------------------------SSSS-------------------------
-----------------------------------------------------------------------S--------
--------------------------------------S-S------------------S-----------S--------
----------------------------S---------------------S-----------------------------
-------------S-------------------------------------------------S--S-------------
-------------------------------------SSSS---------------S----------SS-----------
------------------S-----------S-------------------------------------------------
-----------------------------------S------------------------------------SSS-----
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---------------------------------------------------------------S----------------
-----------------------------------SS------------------
>forward_561
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-------------------------------------------------------------TTCCTGCAAAACCACCAGC
T-------------------------------------------------------------------------------
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>reverse_1578
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---------------------------------------------------------CGCAATTGAGCTGTGGACTC---
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>forward_782
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------------------------------------------TACTGCAGCGGGAGGGAATA------------------
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>reverse_2864
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---------------------------------------------------------------CGACCGTGACAGGACAA
GAC-----------------------------------------------------------------------------
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