>input_sequence_58365
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--------------CTATATAG-GCTTCCCCCGCCGCATGCCCCTTCTTCTCAGTTCTCACCCACCCAAACACCGCCGTT
GAAACCTCCAGTTCTCAGCGGAAACACAGCAACCTGCTCAACCGTCTCCACTAGCTCTCGACCAAGATGGACGTCGCCGA
CGCCGCCTCCTCATCTGGCCAGGAGCAGCA---GGGGCACAGGACGGTGTCGTCTGAGCCGCCGAAGCGCCCCGCGGGGC
GGACCAAGGTGCATGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCAGCGGGGCCGGGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCCGGGGTGAAGGGCTCCAGGCTCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGCGCGCACGA
CGCAGCCGTGCTCGCGCTCTCCGGCCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCGTGGCGCATGCTGCCCGTGCTCG
CGGCCGGGTCGTTCGGCTTCGGCAGCGCGCGCGAGATCAAGGCGGCCGTCGCCGTCGCCGTCGTGGCTTTCCAGAAGGAG
CAGATTA---TCCCAGTCGCCGTCGCCGTCGTGGCGCTACAGAAGCAGCAGATTATCCCAGTCG----------------
----------------------CCGTCGCCGTCGTAGCGCTCCAGAAGCAGCAGATTCCAGTCGCCGTCGCCCTGGTGGC
GCTCCAGGAACAGCAGGTCCCAGTGGCTGTCGCCGTCGTGGCGCTCCATCGGCAGCAGG---------TTCCAGTCGCGT
GCCCGGCAA---------CCTCCGGCCCGGGCAGCGCTCTGTTTTACATGTCGTCCAGCGACTTGTTGGAGCTGGACGAG
GAGCAGTGGTTTGGCGGCATGGAGGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCACCGCCGGACGA
AAGAGCGA---GGCCGGAGGACGGCGAGCAGAG---CGGCGTCCAGACGCCG------TTATGGAGCCAGAGCCACCTGT
TCAACTAATTTAGCAGTGTAAAGCTGTACCATAGA---------------------------------------------
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----------------------------TAGCATCTTGTTCCTTCGTTGTACTTCATTGTACTACTATAAGCTCCCGGTT
TGAGTATTTGTGACGTAGGGGAT----------------------------------TCGCCTTCTTCCTGATTTGGGAA
AAACAGAGTAGGTGGTGTGTTCCTTCATTC--------------------------------------------------
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----------------------------ATAGTAGTAGTGTTTGTCAAGTTCCCGTTCCGGTTTCTAGTTTTGGGCGAAA
GGCTAGATTGTTCA------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G310500
AACATTGTTCATAGTTTTTTAAAAATGTTCCCAAAATTGGATAAAAATCACAAATGTTTTAACATGGTCACATTTCCAAA
CTGTTCACAAGTTTTAAATATTGTTCAACATTTCTCA-----------------------AAAATGTTCACATTTCTAAT
TTTTTTGAGTATTTTAATTAAATATTGGCAAGTTTTAAAAAATCACTTCAAATAT--AGTGTGTTTATGAAAAAA---CA
AAACGCAAAACCACCAAAAAACTGAAAACCAGAAAAATTGCTAGAAACGGCAACGCACGGGAAAACAACTTGGGGACGCA
GTGTGCCGTCCCATGTGCGGTAGGTCGGTAGCTCGGTCCGATTGCCGCACATTTGGTCGCACAGCGCGACACATAGGTGG
TCCCGAGGCTGGGCTCGACAAAAAAAAAAGCGGTGCCGAGACAGAGTGTTGCTGGAAGAAAGAAATAGAGTTTGCAGGCA
GCTGGCGAGAGCCATTTTGGGATATTTCCCTCTTCTTTTTTTTTGTCTCCTTTGCGTGCCTTGATCAGTGGGAAAGCCTC
CGATTTCTGCTCGGATATTCTTAGGCACCGAAGAAGAGCTTACGAAAAATGACAAACCTCTCCAAAAATAGGTCCTATCC
GTTAACGGGCGGTGACCATAAAAGAGGCAAGCAGGCACAACCTTGATTGGATCGCATCA-----TATATCTTATATGGAT
GTGGTCCAAAGTACGCTAATTAGTATGG---AATATGTGGTCGGCAGTCGACCCCGCGTCCACATAAACAACCAATCTCA
TGCCAAAATCCCCGTCGCTAAGCGAGGTATCGGTGACTCCACTCACCACCCGCCGGAGGCCGGTGACGTGAGGAGGCAGG
TGCGCCGCTGAACGTCGCTCCGTGGGTCCTTGTGAAATCCTATGGCCAAGTGGCAGGATGACAGACAGCCAAGATATTTG
AGTGGCAGTGCTGACTGTTCACCGGAAAAGGACGCGCGCCATGAAGGAACCTGCCGCGGTGCTTCAT-------------
-----GTGACGCGCCTATATAG-GCTTCCCCCGCCGCATGCCCCTTCTTCTCAGTTCTCACCCACCCAAACACCGCCGTT
GAAACCTCCAGTTCTCAGCGGAAACACAGCAACCTGCTCAACCGTCTCCACTAGCTCTCGACCAAGATGGACGTCGCCGA
CGCCGCCTCCTCATCTGGCCAGGAGCAGCA---GGGGCACAGGACGGTGTCGTCTGAGCCGCCGAAGCGCCCCGCGGGGC
GGACCAAGGTGCATGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCAGCGGGGCCGGGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCCGGGGTGAAGGGCTCCAGGCTCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGCGCGCACGA
CGCAGCCGTGCTCGCGCTCTCCGGCCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCGTGGCGCATGCTGCCCGTGCTCG
CGGCCGGGTCGTTCGGCTTCGGCAGCGCGCGCGAGATCAAGGCGGCCGTCGCCGTCGCCGTCGTGGCTTTCCAGAAGGAG
CAGATTA---TCCCAGTCGCCGTCGCCGTCGTGGCGCTACAGAAGCAGCAGATTATCCCAGTCG----------------
----------------------CCGTCGCCGTCGTAGCGCTCCAGAAGCAGCAGATTCCAGTCGCCGTCGCCCTGGTGGC
GCTCCAGGAACAGCAGGTCCCAGTGGCTGTCGCCGTCGTGGCGCTCCATCGGCAGCAGG---------TTCCAGTCGCGT
GCCCGGCAA---------CCTCCGGCCCGGGCAGCGCTCTGTTTTACATGTCGTCCAGCGACTTGTTGGAGCTGGACGAG
GAGCAGTGGTTTGGCGGCATGGAGGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCACCGCCGGACGA
AAGAGCGA---GGCCGGAGGACGGCGAGCAGAG---CGGCGTCCAGACGCCG------TTATGGAGCCAGAGCCACCTGT
TCAACTAATTTAGCAGTGTAAAGCTGTACCATAGA---------------------------------------------
--------------------------------------------------------------------------------
----------------------------TAGCATCTTGTTCCTTCGTTGTACTTCATTGTACTACTATAAGCTCCCGGTT
TGAGTATTTGTGACGTAGGGGAT----------------------------------TCGCCTTCTTCCTGATTTGGGAA
AAACAGAGTAGGTGGTGTGTTCCTTCATTC--------------------------------------------------
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----------------------------ATAGTAGTAGTGTTTGTCAAGTTCCCGTTCCGGTTTCTAGTTTTGGGCGAAA
GGCTAGATTGTTCAATACATCAATTATTGGTACAGAACTCGAGAGTACATCGTGCAC-----TCCAGGAATCCATATCAA
ATATTTTATGAGAAGAAAACGACACAATGTCGAAGGACGCCACTGTTGGTTGACAACTTGCGAAAATGATGCTTTTGGAC
GGCTTGCAAGTGGACTCCAAAACTTTACTCGAGAGAAACGGAGAAAGAACGGACAACCGGATTATGCTCGCAAGAACGAG
CGACACAATGTCCAGCCTGTTTGGTGCTGCTCCGCTCGCTAAAATTCAGTTCAGCTCCAAGAGTTCCACTTTGGAGC-TG
CAACTCCATCATAGAATAGTTGATCCTCTTTGGGTCTGAGCTAGCTCTCTCTCCAAGAATTGAAATTTTGGTGAAAAAGG
TTTTATCGTGTAGTTGGATTTTTTAGGACGATGTTTTGACGTACAGCTTGTGTG---------------------TTGTA
CGCATGAATATACGTTGGATTAAAAGTATATAATATAATGTTAACAAAAACAATTAGTACATTCGAATGATTAAAAATTA
TGTCCGCCAATATATATATGGGCTATTCTAACATAATATTATTCTGTTACCCTTCGTGAACTGATGTGGTGTACAGGTTG
GACTGACGAGGTTTTCTACTTGAACCGATCTTCCTGTGTGTACGACGGTCGGAGACAGGTGATGCAACGTGGAGCTTCCG
GGCGTTCTCCGGCACGATGCTACGGGCCATTCGTGGCTCCTCATCGTCCTGCGTTCGTCCTCGTGGCCGTGCGCTGCTCG
TCGTTGTCACCGCATCGGCCCCGCCCCGTCGCACGTCGTCCTCGTCCTTGACCTCCGTCATCCTCCTCGGACCGCCAACC
GTAGTCGTTGACTCCGGCCGTCTCAAGTCGTCCCTGAGCCTTTTCTGCAACTGCAGTGAGCCCCGCATCCTCCCTCTCTC
CCCGTGCTCTCCTTTGGTAGTCGTAGATCGTCGCCGACGTGATCGTGCGCCGGCCACACCCGATGACCTAGATCGCCCCG
T
>chr5D_1
AACATTGTTCATAGTTTTAAAAAAATGTTCCCGAAATTGGAGAAAAATCACAAATGTTTTAACATGGTCACATTTCCAAA
CTGTTCACAAGTTTTAAAAAGTGTTCAACTTTTTTCTAAAAATGTTCACAAACTTTTTAGAAAATGTTCACATTTCTA--
-TTTTTGAATATTTTAATTAA-TATTGGAAATTTTAGAAAAATCACTTCAAATAAACAGTGTGTTTCTGAAAAAAAAACA
AAACGCAAAACCACCTGAAAACAGAAAACCAGAAAAATCGCTAGAAACGACAACGCACGGGAGAACAACTTGGGGGTGCA
--GTGCGGTCCCATGTGCGGTCGCTCGATG--------CGATTGCCGCACATTTGGTCGCACAGCGCGACACATAGGAGG
TCCCGAGACTGGGCTCGACCAAAAAAAAGG-GGTGCCGATACAGAATGTTGCTGGAAGAAAGAAATAGAGTAGGCAGGCA
GCTGGCGAGAGCCAATTTGGGATATTTCCTTTTTTGGG------GTCTCCTTTGCGTGCCTTGATCAGTGGGAAAGCTTC
CAACTTCTGCTCGGATATTCTTAGGCACCGAAGAAGCGCTTACG-AAAATGACAAACCTCTCCAAAAATAGGTTCTATCC
GTTAATGTGCGGTGACCATAAAAGAGGCAAGCAGGCACAACCTTGATTGGATCACATCGTATACTACATATTATATGGAT
GTGGTCCAAAGTACGCCAATTATATGCGGAAAATATGTGGTCGGCAGTCGACCCCGCGTCCACATAAACAACCAATCTCA
TGTCGAAATCCTCGTCGCTAAGCGAGGTATCGGTCCCG------------------------------------------
----------------GCTCCGTGGGTCCTTGTGAAATCCTATGGCCAAGTGGCAAGATGATAGACAGCCAAGATATTTG
AGTGGCATTGCTGACTGTACACCGGAAAAGGACGCGCGCCAG----GAACCTGCCGCGCTGCTTCATGTGAGCGTGAGGG
TGTGAGTGACGCGCCTATATAG-GCTTCCCCCGCCGCGT-CCCCTTCTTCTCAGTTCTCACCCACCCAAACACCGCCGCT
GAAACCTCCGGTTCTCAGC----ACACAGCGACCTGCTCAACCGTCTCCACTAGCGCTCGGCCAAGATGGACGTCGCCGA
CGCCGCCTCCCCGTCTGGCCAGGACCAGCA---GGGGCACAGGACGGTGTCGTCTGAGCCGCCGAAGCGCCCCGCGGGGC
GGACCAAGGTCCATGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCAGCGGGGACGGGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCTGGGGTGAAGGGCTCCAGGCTCTGGCTCGGCACCTTCACCACCGCCGAGATGGCGGCGCGCGCGCACGA
CGCCGCCGTGCTCGCGCTCTCCGGCCGCGCTGCCTGCCTCAACTTCGCCGACTCCGCATGGCGCATGCTGCCCGTCCTCG
CGCCCGGGTCGTTCGGCTTCGGCAGCGCGCGCGAGATCAAGGCCGCCGTCGCCGTCGCCGTCGTGGCGTTCAAGAAGCAG
CAGATTA---TCCCAGTGGCCGTCGCCGTCGTGGCGCTACAGAAGCAGCAGATTATCCCAGTGG----------------
----------------------CCGTCGCCGTCGTGGCGCTCCAGAAGCAGCAGATTCCAGTCGCCGTCGCCCTCGTGGC
GCTCCAGGAAAAGCAGATCCCAGTCGCCGTCGCCGTCGTGGCGCTCCATCGGCAGCAGG---------TTCCAGTCGACG
ACCCGGCAA---------CCTCCGGCCCGGGCAGCGCTCTGTTTTACATGTCCTCCAGCGACTTGTTGGAGCTCGACGAG
GAGCAGTGGTTTGGCGGCATGGACGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCACCGCCGGACGA
AAGAGCGA---GGCCGGAGGACGGCGAGCAGAG---CGGCGTCCAGACGCCG------CTATGGAGCCAGAGCCACTTGT
TCAACTAATTTAGCAGTGTAAAGTTGTACCATAGTCCA------------------------------------------
---------------------------------------------------------------------TAGATAGTTGT
GTTCTTTTCAATTTGGAGAGAAACACAGTAGCATCTTGTTCCTTCG---------TTG----TACTATAAGCTCCCGGTT
TGAGTGTTTGTGAGGAAGGGGATTGCATATTACACCAATTATTGGTC-----ATTGGTCGCCTTCTTCCTGATTTGGGAA
AAACAGAGTAGGCGGTGGGTTCCTTCATTC--------------------------------------------------
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----------------------------ATAGTAGTA---TTTGTCAAGTTC-----CCGGTTTCTACTTTCGGGCGAAA
GGCTAGATTGTTCAGTACATCAATTATTGGTACGGAACTCGAGTGTATATCGTGCAC-----TCCAGGAATCCAT-----
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>chr5B_5
CCAGC---------------------------------------------------------------------------
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-----------------------------------------------------------GACCTGTCGGGGCTTGACAAC
GAGCACTGGATCGGCGGCATGGAGGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCATGGAGCCGCCGGCCGA
CGGAGCTTCTTGGCGGGAGGACCGCGAACACGACGACGGCTTCGACACGTCG------CTGTGGAGCTACCAGTG--TGA
TCAACTGATTAAGCAATGTAAAGTTCTAGAGAGTACTGCTAGTGC-----------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------TAGATTGTGTTTCACCAAATATGGGAA
GAACAGAGAGTAAGCATCGGGGGAAAGGTTTCCCCCCAAATGTGAAAGCGCTCGGTTTCTAACTTTCTACTCCCGGAAGG
GCACAAACGAGCTTCTTTCTTTATTCAATAAATAAATAGAGAAATGAGCAGTAGTAGATCAATCATTCGCTCCATGGACA
CAAACCAAATATCTTGACGTCACGGCTGGGCGACCCTACCACTAGGACTGCCATGCAATATAGTAATTCAGTGGTAGGTA
CTGTTCGTTCATGTGTGATGACCAGAATTGGCAGGCAGCCAGAAATATCTGAAGTCGACCAGGGGTAGTCATGGGACCAG
ATGTTTATTTCTGATTAATTATTTTGATTGATTGAGGAGAAAGAAAGACAGAGCCTTGCCATTTTTAAATCAGACAAAAC
AAAAGACATTACTAAACCACTTTAGAGCATGGTTAATAGTATAGCCAGCTGCTGGCTATAAGCCAGTGCCATGTCATCCA
CAACTCATCTTATAGCCAACATGTATAATAGTAGATCAAAAGAGTGTACTACTTTTTCATTATGTGGCCCACCTTTCATT
CTCACAAAGTGCCTAGGAGCACGTGCTAGAGCTGGCTCTTCACGAAGAGCCCGCTTACCTTCTCTCTCCTCTTCTTTTTC
CTCCAACTAAGCAAAAATATACTAGTTTATTCCATATAGCCTGCTGACTCATCTCTATTATACTTGTTCTTATACGACAA
TGACAGCCGCCGATCGCTCATTGGTCGTGTCTTCTTTTGCCGTGAAAGCAACGTCCAAAATATCTACACAGGGTTCTTGA
AAAAATGTGGTGATCTCGCACCTTCCATATCTTCACAATACATACATGATGACCTCCCCCGAAAAGCTTCTGTTGTGGAG
GATCAATGCTACTAGGGTGTTCGTCGAGCGGTAAAAATTCGTTAGTGGCGAGGACGGAGTGGCGATCCGTTGGCTGGACA
GCTGGGATAGCTGCCAGCCCATCCAAGTTCGAGCCCCGGCTCGGACACACGGTGCTCGCGAAATTTCTTCTATATAAAAA
AATTGCCAACGAGGGTTAGCCCTCGGGTTGGTCTCATTTTTGCTTAAAATTTGTTAGTTGTGTTGGCGGACAAATAATTG
GAAACAATGCCTGAAAATTCGCGAACAAAGGGACATGCATGTCGGAGATGCTCATTTCTCTCAAACCTATGACACCTCTA
GTTGACCCTAAATTTTAGAGGAGCAAACGGCCATTGTGTTTGCATAGTTAGGACAATGCAAAAGCAAAGTTTCCAACAAC
TATCAAACTGAGCCGGCACATTACATCCTCTTTTGCATTTTTGTTTTTGTTTTGATTGGAATCATCTTATAACATATTTA
TGCTAAATTCTGTTATTATTATCTTGCCCTGTTGGCCATAGGAATTAGTAGGAGGAGGAGGAGGCTGAGACGTCCCATCG
AGCTCGTGAAATTGCAGCTGCTTCCTCCCTCACGGTGACGGTTACCCACCCCCCACTAACGTGTAAGAGGCGACAGCTCG
CGTAACGTAACTGCGGTTTTACGTGCAAACCAATCTATGATTGGCTGGTTAGGTGGGCAATTATATTCCCGATCCATCCG
GGTTTAAATTCTGGTGCTCACATTTATTATGAATCTATTTTTAGGATTTTCGACGATGCACGTTCAGTAGAAGGAGACGT
TTCTGTCGACTATAAACTGTCTATGATGACTTCGTAAAATCGCAAGATGATATGCTGACTCAGTCTCTCGGAGGTGCTCA
TAGAGATAGAGTGTACATGTGTGCATTCATAGAAATGAGTGTATGCACGTGTATATTAATGATTATGTTCAAAGAAAAAA
ATAGCTGACGGTAGCACACGAGACTGGAAAAAACCAGCCAGCACATCATCTTGAGATTCATAAAGTCACAACAAATGCCT
TCGTAATTGATGGAAACGTCTCCTTCCACTGAAGCTACATCCTTAAAAGGGCTTAAATAAATTCAAAAACATACGTGCAC
TAGTGTCAAGTCTAGGACTTGAAACCTGATGGACTCAAGATACAATTATCCTTCTAACCACCCAGCCATAGGTTGGTTCG
CGTTGCCACCTCGCGTAAACTAAATACAACTTTTCTTTGGAACCATTTGCCAATCTTTGTCTAGTAGCCATCATTTTCCT
AGCCAAGTTGGTTGTTTCTCCTTTTTCTTTTTGTCCCTTTCTTAATTAGCTAATTAATAAATGTTCCTTATTAAATAAAC
TAATCGCTATTCTTGAAAACATCACGCACTTGCAGGTGGCAGCCCCAACACCAGGCCCAAAGGTGATCTAGGACTCCTCC
ACCATCACCCTCTTATATCGGTAGATTGTCGGCCTCCTCCTCCTCCACCGTCTCCGTTGACAGGGGTGTACGAGGAGGCC
CCGATCTACCGGTGATGGTTGTAGTTTTTCTATCTTGAAGCTTTAGGTAGTTCATCGCTTGTCCGTCACTCCAGACATTC
AATGGTGGTGGCGGCAGTATTCACTAATGGTTACTTTGGCTTCTTCTCCTACCCTGGTGATGCGTATATCATAAGTTCTA
GCAACAATATTTGGTGCACAAGTAGGTCTTCACTGTTCGTGGCTTCAGTCCTTCCAAAGGTGCCCGTTGCGGTGTTCAAT
AAAGCCTTTGTCGGCTTCTAGGATGTGTGCGCCATTGAGCTAGCTTATGATACTCCCCATATTTGTGAACCCTGATCAGG
GTTGAACCAACGAGGGGATGATAGACTGCATCCGCATGGCACATCATCTTGGATAGAGCTTTAGTGATGCAGTTCGATGG
GACCGAAACTTAAAGTTCTAGAGTACCATTGTGTTGGGACCCATCATCCATGGTGTTTCTTGTACAAAGAAGACAGAGGG
TAATCCCTATTTGTCACATATTGCAACAAAATGTGGATCTCTCACATAAGGGTGTGCGACTGGGCTAGATCCAATAGACA
TGAGCAATTTTCTTCCTGTCGACTTCCTATAGCAGTTGGTTTCGGTCGGGTTTCGTTGCGGTTTCTTACACCAGTAGGTT
CCGATCAAGTTCTATCCTTCATTTCTTTCCCCGTATTCCTTTTTTTCTGGGAGGTTATTATTTGTTTCGGGAACATCTAG
ACAGTTCTTTTTTTTCTTTTACTTTCAAGACGTTGTTCATAGTTTTTAAGAAATGTTCCCCAAAATGAAAAAAAATCAC-
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---------------------------------------------------------------------------AAATG
TTTTATCATGGTCACATTTCCAAACTGTTCACAAGTTTTTAAAAATGTTCAACATTTTTCTGAAAATGCTCACATTTGTA
TTTTTGAATATTTT-------------------------------------AATTAATATTGACAAGTTTAGAAACATCA
CTTCAAATAAACGGTGTATTTATGATAAAACAAAATGCAAAACCACCTAAAAACAGAAAACCAGAAAAAATCAATTGGAA
CGGCAACACACGGGAGAACAACTTGGG-----------------------------------------------------
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>chr5B_749
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----------------------------------------------------------------TAAACAACCATTCTCA
TGTCAAAATCCTCGTCGCTAAGCGAGGTATCGGTGGCTCCACTCACCCA---CCGGAGGCCGGTGACGTGAGGAGGCAGG
TGCGCCGCTGAACGTCGCTTTGTGGGTCCTTGTGAAATCCTATGTCCAAGTGGCAAGATGACAGACAGCCAAGATATTTG
AGTGGCATTGCTGACTGTACACCGGAAAAGGACGTGCGCCAT----GAACCTGCCGCGCTGCTTCATGTGAGCGTATGCG
TCTGAGTGACGCGCCTATATAGGGCTTTCCCCGCCGCAT-GCCCTTCTTCTCAGTTCTCACCCACCCAAACACCGCCGCT
GAAACCTCCAGTTCTCAGC----ACACATCGACCTGCTCGACCGGCTCCACTAGCGCTCGTCCAAGATGGACGTCGCCGA
CGCCGCCTCCCCGTCTGGCCAGGAGCAGCA---GGGGCACAGGACGGTGTCGTCTGAGCCGCCGAAGCGACCCGCGGGGC
GGACCAAGGTACATGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCAGCGGGGCCGGGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGGCCGGGGTGAAGGGCTCCAGGCTCTGGCTCGGCACCTTCACCACCGCCGAGATGGCGGCGCGCGCGCACGA
CACCGCCGTGCTCGCGCTCTCCGGCCGGGCTGCCTGCCTCAACTTCGCCGACTCCGCCTGGCGCATGCTGCCCGTGCTCG
CGGCCGGGTCTTTCGGCTTCGGCAGCGCGCGCGAGATCAAGGCCGCCGTCGCCGTCGCCGTCGTGGCTTTCCAGAAGGAG
CAGATTA---TCCCAGTCGCCGTCGCCGTGGTGGCGATCCAGAAGCAGCAGATTATCCCAGTCGCTGTCGCCGTCGTGGC
GATCCAGAAGCAGCAGATTATCCCGTCGCCGTCGTGGCGCTCCAGAAGCAGCAGATTCCAGTGGCCGTCGCCCTCGTGGC
GCTCCAGGAACAGCAGGTCCCAGTCGCCGTCGCCGTCGTGGCGCTTCATCGGCAGCAGG---------TTCCAGTCGCGT
GCCCGGGAA---------CCTCCGGCCCGGGCAGCGCTCTGTTTTACATGTCGTCCAGCGACTTGTTGGAGCTCGACGAG
GAGCAGTGGTTTGGCGGCATGGAGGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCACCGCCGGGCGA
AAGAGCGA---GGACGGAGGACGGCGAGCAGAG---CGGCGTCCAGACGCCG------CTATGGAGCCA------CTTGT
TCACCTAATCTAGCAGTGTAAAGTTGTACTCCCTCTGTCCGGAATTACTTGTGCGAAAATGGATTAAAATGAATGTATTT
AGAACTAAAATACGTCTAGATACATCAATTTCTCAGACAAGTATTTCTGGACGGAGGGAGTACCATTATTAGATAGTTGT
GTTCTTTTCAATTTGAGGAGAAACAGAGTAGCATCTTGTTCCTTCGTTGTACTCATTG----TACTATAAGCTCCCGGTT
TGAGTATTTGTGAGGAAGGGGATTGCCTATTACACCAATTATTATTGGTCAAATTGATCGCCTTCTTCCTGATTTGGGAA
AAACTGAGTAGGCGGTGTGTTCCTTCATTC--------------------------------------------------
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----------------------------ATAGTAGTAGCACTTGTCAAATTC-----CCGGTTTCTACTTTTGGGCGAAA
GGCAAGATTGTTCAATACATCAATTATTGGTACAGAACTCGAGAGTACATCGTGCACTGCACTCCAGGAATCCATATCAA
ATATTTTATGAGAAGAAAACGACACAATGTCGAAGGACGTCACTGTTGATTGACAGCTTGTGACAATGATGCATTTGGAC
GGCTTGCAAGTGGACTCCAAAACTTTACTCCAGAAAAATGGAGAAAGAACGGACAACCAGATTATGCACGCAAGAACGAA
CGACACAATGTCCAGCCTGTTTGGTGTTGCTCTGCTCGCTAAAGTTCAATTCAGCTCCATCAATTCCACTTTGCAGCATG
CAACTCCACCATAGATTAGGTGATCCTGTTTGGATTTCAGCTAGATCCGACTTCAAGAATTGAAATTTTGGTGAAAAAGG
TC-TATCGTGTCCCTGGATATTTTAGAACGATGTTTTGACGTATGGTTTGAGTG---------------------TTGTA
TGCATGAATATACGTTGGATTAAAAGTATATAACGTAATGTCAACAAAAACAATTAATACATTCAAATGATTAAAAATGA
TGTCCACTAATATATATA--------------------------------------------------------------
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>chr5A_1095
--------------------------------------------------------------------------------
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-----------------------------CAACGTGCTCAACCATCTCCACTAGCTCTCGACTCAGATGGACGTCGCCGA
CGCTGCCTCCAAGTCCGGCCAGCATGAGCA---GGGTCACAGGACGGTGTCGTCGGAGCCGCCGAAGCGGCCGGCGGGGC
GGACCAAGTTGCACGAGACGCGCCACCCGCTGTACCGGGGCGTGCGGCGCCGTGGCCGGGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCCGGGGTGAAGGGCTCCAGGCTCTGGCTCGGCACCTTCACCACCGCCGAGATGGCGGCGCGCGCGCACGA
CGCCGCGGTGCTCGCGCTCTCCGGCCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCATGGCGGATGCTGCCCGTGCTTG
CGGCCGAATCGTTCGGCTTCGGCAGCGCGCGGGAGATCAAGCTTGCCGTCGCCGTTGCCGTCGTTGCGTTCCAGCAGCAG
CAGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TTATTCTTCCAGTCGCGT
GTCCAACGGTGGAGGCGGCCGCCAGCCCGAGCAACTCTCTGTTTTACATGTCGTCCGTCGACTTGCTGGAGCTCGACGAG
GAGCAGTGGTTTGGCGGCATGGACGCTGGGTCGTACTACGAGAGCTTGGCGCAGGGGATGCTCATGGCGCCGCCGGACGA
CAGAGCGA---GGCGGGAGGACGCCGAGCAGAC---CGGCGTCGAGACACCGACGCCGTTATGGAGC-------------
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>chr5A_1108
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------------------------------------------CGTCTCCGCCAGCTCTCGACTCAGATGGACGTCGCCGA
CATCGCCTCCCCGTCCGGCCAGCAGGAGCA---GGGCCACCGGACGGTGTCGTCGGAGCCGCCGAAGCGGCCCGCGGGGC
GGACCAAGTTCCACGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCGCCGTGGCCGCGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCCGGGATCAAGGGCTCCAGGCTCTGGCTCGGCACCTTCAACACGGCCGAGATGGCGGCGCGCGCGCACGA
CGCCGCCGTGCTCGCGCTCTCCGGCCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCATGGCGCATGCTGCCCGTGCTCG
CGGCCGGCTCCTTCGGCTTCGGCAGCGCGAGCGAGATCAAGGCCGCCGTCGCTGTCGCCGTCGTCGCGTTCCTGCGGAAG
CAGATTGTTCTTCCAGTCGCCGTCGCCGTCGTGGCGCTCCAGCAGAAGCAGGTC---CCGATCG----------------
----------------------CCGTCGCCGTGGTGGCGCTCCAGCAGAAGCAGGTTCCGGTCGCCGTCGCCGTGGTGGC
GCTCCAGAAGCTGCCAGTTCCGGTCGCCGTCGCCGTCGTGGCGCTCCAGCAGCAGCAG---ATCATTCTTCCAGTCGCGT
GCCTGGCGCCCGA---------------------------GTTTTACATGTCTTCCGGCGACCTGTTGGAGCTGGACGAG
GAGCAGTGGTTTGGCGGCATGGAGGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCGCCGCCGGACGA
AAGAGCCA---GGCCGGAGAGCGGCGAGCAGAG---CGGCGTCCAGACGCCG------CTATGGAGC-------------
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>chr5D_1108
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------------------------------------------CGTCTCCGCCAGCTCTCGACTCAGATGGACGTCGCCGA
CATCGCCTCCCCGTCTGGCCAGCAGGGGCATCGGGGACACCGGACGGTGTCGTCGGAGCCGCCGAAGCGCCCCGCGGGGC
GGACCAAGTTCCACGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCGCCGTGGCCGCGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCTGGGATCAAGGGCTCCAGGCTCTGGCTCGGCACCTTCAACACGGCCGAGATGGCGGCGCGCGCGCACGA
CGCCGCTGTGCTCGCGCTCATCGGCCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCATGGCGCATGCTGCCCGTGCTCG
CGGCCGGGTCGTTCGGTTTCGGCAGCGCGAGCGAGATCAAGGCCGCCGTCGCCGTGGCCGTCGTCGCGTTCCAGCGGAAG
CAGATTATTCCG---GTCGCCGTCGCCGTCGTGGCGCTCCAGCAGCAGCAGGTT---CCGGTCG----------------
----------------------CCGTCGCCGTCGTGGCGCTCCAGCAGAAGCAGGTTCCGGTCGCCGTGGCCGTCGTGGC
GCTCCAGCAGCTGCAGGTTCCGGTCGCCGTGGCCGTCGTGGCGCTCCAGCAGCAGCAG---ATTATTCTTCCAGTCGCGT
GCCTGGCGCCGGA---------------------------GTTTTACATGTCTTCCGGCGACCTGTTGGAGCTTGACGAG
GAGCAGTGGTTTGGCGGCATGGACGCTGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCGCCGCCGGACGA
AAGAGCGA---GGCCGGAGCACGGCGAGCAGAG---CGGCGTCCAGACGCCG------CTATGGAGC-------------
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>chr5B_1110
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--------------------------------------------TCTCCGCTAGCTCTCGACTCAGATGGACGTCGCCGA
CATCGCCTCCCGGTCCGGCCAGCAGGAGCA---GGGGCACCGAACGGTGTCGTCGGAGCCGCCGAAGCGCCCTGCGGGGC
GGACCAAGTTCCACGAGACGCGCCACCCGCTGTACCGCGGCGTGCGGCGCCGTGGCCGCGTCGGGCAGTGGGTGTGCGAG
GTGCGCGTGCCCGGGATCAAGGGCTCCAGGCTCTGGCTCGGCACCTTCAACACGGCCGAGATGGCGGCGCGCGCGCACGA
CGCCGCGGTGCTCGCGCTCTCCGGCCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCCTGGCGGATGCTGCCCGTGCTCG
CGGCCGGCTCGTTCGGCTTTGACAGCGCGCGGGAGATCAAGGCCGCCGTCGCCGTGGCCGTCGTCGCGTTCCAGCGGAAG
CAGATCA---TTCCAGTCGCCGTCGCCGTCGTTGCGCTCCAGCAACAGCAGGTT---CCGGTCG----------------
----------------------CAGTGGCCGTGGTGGCGCTCCAGCAGAAGCAGGTCCCGCTCGCCGTCGCCGTCGTGGC
GCTCCAGCAGCTGCAGGTTCCGGTCGCCGTCGCCGTCGTGGCGCTCCAGCAGCAGCAGCAGATCATTCTTCCAGTCGCGT
GCCTGGCGCCGGA---------------------------GTTTTACATGTCTTCCGGCGACCTGTTGGAGCTGGACGAG
GAGCAGTGGTTTGGCGGCATGGAGGCCGGGTCGTACTACGCGAGCTTGGCGCAGGGGATGCTCGTGGCGCCGCCGGACGA
AAGAGCGA---GGCCGGAGCACGGCGAGCAGAG---CGGCGTCCAGACGCCA------CTATGGAGC-------------
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>SNPs
------------------SS------------S--------S--------------------------------------
------------------S-S--------S---S--S-----------------------------------------SS
S-------S------------S------S--S---SS-----------------S-----------S-------------
---------------SS-----S---------------S----------S------------S------------SS---
SS----S--------------S-S---S-SSSSSSSSS---------------------------------------S--
-------S-----------S--------S-S--------S-----S-------------------------SS-------
--------------S--------------S-S--SSSSSSSSSS---------------------------------S--
-S-S--------------------------------S-------S----------------------------S------
-----S-S---------------------------------------------S----S-------S--S----------
----------------S-----SSSSS-----------------------------------------------------
--S--------S-----------------------S-----------SSSSS----------------------------
-------------------------------------------------------S------------------------
-------S----------S-----------------------SSSS------------S---------------------
---------------------------------------S--------------------------------------S-
-------------------SSSS---------------------------------------------------------
----------S-S-------------------------------------------------------------------
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------------------------------------------------S-------------------------------
---S-----------------------------------------------------S----------------------
-------------------------------------------S------------------------------------
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-----------------------------------S--------------------------------------------
------------------------S--S----------------------------------------------------
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----------------------------------------------------------------------------S---
-----------------------S--------------------------------------------------------
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-----------------------------------------------------SSS-SSSSS------------------
-------------S-S----------------------------------------------------------------
------------S-------------------------------------------------------------------
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--------------------------------------SS------------S--------------S------------
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---------------------------------------S--------S------S----------------S-------
------------------------------S---S---S-------------------S--------S-----------S
--------------------------S-----S----------S----S----------SS-S----------S------
--------S------S---S-------S-----S-S-S------S--SSS--S---------------------------
-----------SSS-----S-----------------------S--S---S-----------------------------
S--------------------------------SS------S--------------S-------S-------------S-
-----S-S-----------SSSSS--SSS-SS-S-SSSSS-SS-SSS--SSSSSS-SS---SSSSSSSSSSS-SSS-SSS
SSSSS--SSSSSSSSSS--SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_351
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-----------CATGTGCGGTAGGTCGGTAG-------------------------------------------------
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>reverse_5593
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------------------------------------------------------------------------TTTTGGAC
GGCTTGCAAGTG--------------------------------------------------------------------
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