>input_sequence_58359
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATGGAGGCCAACAAGCCTAGC
TACTATCTCTTCGTCTTCGTCTTCGCGGCGCTCCTCTTGTCCTCCATGGCTGGTTAGCTATAGCTCCACATGGTCGTTGC
ATTTATTTCCTTTTAGCTAGGTCATGTATGTGCTTTTCTCTTATGTGCCTTTGTTAGTTCTTGTGCATCCGAGAATGTTG
GTTCTATTGCTTTGTTTCGGTTCTGATTTTTTGGAGTTTGCTTGAGGCAGGAGCGCAGAGGAAGTTGCTGATGAGTGAAG
ATGATGCAGGATCGAGGATGGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTT
GTGTTGTTATATTAGATTCCCTTTT--------------------AGCTAGCTAGCAAGCTAGCAAGAAGTTCTTAGTAA
ACAAGGAACTAATAGTT-GTTAACACGTGAGAAATTTGAAGAGATATACTCCTATGGAGTCATATTTACTAATGTCTTCA
AATATTGGACAAA--TTTTATTTCAAAAGAAGAAGAATAAGTTTAGTAAATCAATTCCTTAATTAACTTGTCTCCCATCT
CCTCTTGGTCTGGATAGCACATAAATAGGACATGCAACACAAGTTGACTAGCTAGGCATAAGACTTATCGATGCAGTTTC
TCCCGACTAGAACACGGTTTT-TTCTATGCAGCAAACTCTGAATTATTTCGTATATAAAAA-------------------
--------------------------------------------------TATATGACGAACTGCAGACC----------
-----------------------ATGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATCGAATCAA
AATCACAAATCATTCGAATGAAACTAGCACAAGCAGCAAGATGTACACTGCATGCGTCTTGTAATATGTCGGATCAAATT
AGCACTAGCATATCACTTCGGACCCTGGCACCCTGCTGCT-TGCATGGATACATGCATATGGTCATCCGTTTGTA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GTTGTAAATGATTACATGTATTGCTCTTGTATTGTTTGTTAGCC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTTGTGCATGCATGCGTGCAT
GGAATCATCCGTGCAGCAGCAGGAAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGA
CGAACGACTACGGGACCTATGACCCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3A_1_TraesCS3A01G177300
GCCGCCCACGGAGGCAGTGCAGTCGCAGGAGAAAAGGAAGAGGTGTCGCGCTTCGCGCCGTCGTGATTTCAGATACACAC
ATTCCAATGACAGTCAAGACCTAAGATGAC--AGACTGTCAAAC-AAAGGGACCACTACGTGCTATGTAGC----AAAAT
GCAAGGATATGAGTAGTGAAAGTAAAATAGAGATAGCATAATTCTACGTCTGCATGCCGGAAAAGTAATTAGCCAGCAGG
CTTTTAACCCTCTGCAGCTCATCATAGTTTCAACCTCAAGTAAACTAGGACAGTTCCGGCCCGTTGGTGGTCACCATGTT
GCGTGCATGGCTGTCGCTGGTA--TGGCATCTAACACCACTACCGCAGAACTCTGACCAATGTCCACCACTCTTGTGAAA
CCACTATATATAATCATAATACACAAAATTTATCCAGGCTTAGTTAAAGATATTCTAACCTGTTAACTTGTGGCACCTAC
CAGCACCAGCACAGAGCCGAACAACAACCAGTCTCAATTGGATCTCGTTTTCACAGGATGACATTATTCAAAAGAAAGAC
AAATACGGTATGCCGTCATTGCACTCCAAGAATGAATATGGTATATATGCTAGATTATATACTTGCATGGTCAGTTGCTT
TAGCTTCTGGGGCTAGTTAATCAAACAGGCTGCACCAGCAAGTCTAGTGTGATGATGACTACAGGGCCCTGAAAAACTCC
ACAGGGAAAGCTCTGACCCATCCCTTTAATCTCCACTTTTGGTTTTAATAAGCAGCACACTCCACTGAGATTCACATCCC
CATCATGCTGCCCCAGAGAAATAGTTGTATA----------CTAAATCTATTCTGTTCTTTCGGACAACTCACATCTGCA
GGGTGTTGGTTCCTTTGTGTCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGT
CTCTCTCTTGAAGCTGAGGAAAGGTAGCTGCATGCTCTCCCTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGC
TACTATCTCTTCGTCTTCGTCTTCGCGGCGCTCCTCTTGTCCTCCATGGCTGGTTAGCTATAGCTCCACATGGTCGTTGC
ATTTATTTCCTTTTAGCTAGGTCATGTATGTGCTTTTCTCTTATGTGCCTTTGTTAGTTCTTGTGCATCCGAGAATGTTG
GTTCTATTGCTTTGTTTCGGTTCTGATTTTTTGGAGTTTGCTTGAGGCAGGAGCGCAGAGGAAGTTGCTGATGAGTGAAG
ATGATGCAGGATCGAGGATGGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTT
GTGTTGTTATATTAGATTCCCTTTT--------------------AGCTAGCTAGCAAGCTAGCAAGAAGTTCTTAGTAA
ACAAGGAACTAATAGTT-GTTAACACGTGAGAAATTTGAAGAGATATACTCCTATGGAGTCATATTTACTAATGTCTTCA
AATATTGGACAAA--TTTTATTTCAAAAGAAGAAGAATAAGTTTAGTAAATCAATTCCTTAATTAACTTGTCTCCCATCT
CCTCTTGGTCTGGATAGCACATAAATAGGACATGCAACACAAGTTGACTAGCTAGGCATAAGACTTATCGATGCAGTTTC
TCCCGACTAGAACACGGTTTT-TTCTATGCAGCAAACTCTGAATTATTTCGTATATAAAAA-------------------
--------------------------------------------------TATATGACGAACTGCAGACC----------
-----------------------ATGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATCGAATCAA
AATCACAAATCATTCGAATGAAACTAGCACAAGCAGCAAGATGTACACTGCATGCGTCTTGTAATATGTCGGATCAAATT
AGCACTAGCATATCACTTCGGACCCTGGCACCCTGCTGCT-TGCATGGATACATGCATATGGTCATCCGTTTGTA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GTTGTAAATGATTACATGTATTGCTCTTGTATTGTTTGTTAGCC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTTGTGCATGCATGCGTGCAT
GGAATCATCCGTGCAGCAGCAGGAAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGA
CGAACGACTACGGGACCTATGACCCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATC
TACATATATATCTGAGATCGACGGCTGGATATATATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGAT
GGCAGGGTTAATGCTTTCATATAC----ATATATATGCGAGAATATGATGTGTGCTACATATTATTTGTCCCCAAATAAA
TCGTATCTCATGTATCAATGCACGACACGCGTGTGGAACTTATATATGTCTATATATGTATGTACACTAGTTTTGTGTGG
ATATATATACCTGGTGTGTGCATCCTTGTTTGGTACTCATGCATGTTCGTT-----------------------------
GATTACTCCTGCATATTTGATTATCTCCTTTGGATGTACAAAAAAA-TTGGTAGTGGTTGTATGCTCTTAGTTGATATAT
GT------------------------------------------------------------------------------
----------------TTAGGAAAACAAAACCTTGAAATTGTGTCGTGGCTAACAAAAAAGCATAAAAGATACATATATC
ATCTCGAATGATTTTGTTATTTTAGAAATTAAGTAGTCTTGATTGTCAGATAGGATGCCATTTTTTGTGCAAAAGTTTAC
TAAACTAATTTTGCAACAACACTACTCAACGATCGCAAACTGAACCCTAACAATTTCTGATTTTCATAAAGCATATCACT
AGCTCATGCGGATGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACGTCTGTTCATGTATTGTGTGTTTTTTCA
TTACATTATTCATGCACGCTTGAGGATTGTAGTCATATAGAAAGAAAGTAGGCACGTGGAACAAAGAATGAGACTGTAAG
GACTCCATATTAATAGGATTTTAAGGATTTTCAACAAGATATATAAAAAAATTAGACAAACCTATTTTGTCTCTTAAAAA
-TGATCATACGGACTTTGGTTGCATAATTGTTGACGTATAATGTGCTGCCTAGTCTTTTCCATCAGATCGGTTTTTTGGT
TGCATTGGCTAGAGCATGCACTTCTACATGGTATCGGAGTCAAGGGGGAGTGTTGACGTATAATGTGTTGCCTAGTCTCT
TCCTTCAGATCGGTCTTTTGTTTGCATTGGCTAGA
>chr3D_93
--------------------------------------------------------------------------------
------------GTCAAGAGCTAAGACGACAGAGACTGTCAAACCAAAGGGACCACTACACATGGTATGTAGCTAAAAAT
GCAAGGATATGAGTAGTGAAAGTAAAATAGAGATAGCATAATTCTACGTCTGCATGCCGGAAAAGTAATTAGCCAGCAGG
CTTTTAACCCTCTGCAGCTCATCATAGTTTCAACCTCAAGTAAACTAGGACAGTTCCGGCCCGTTGGTGGTCACCATGTT
GCGTGTATGGCTGTCGCTGGTATATGGCATCTAACACCACTACTGCAGAACTCTGACCAATGTCGACCACTCTTGTGAAA
CCACTATATATAATCATAATACACAAAATTTATCCAGACTTAATTAAAGATATTCTAACCTCTTAACTTGTGGCACCTAC
CAGCACCAGCACAGAGCCGAGCAACAACCAGTCTCAGCTGGATCTCGTTTTCACAGGATGACATTATTCAAAAGAAAGAC
AAATACGGTATGCCGTCATTGCACTCCAAGAATGAAGATGGTATATACGCTAGATTATATATTTGCATGGTCAGTTGCTT
TAGCTTCTGGGGCTAGTTAATCAAACAGGCTGCACCAGCAAGTCTAGTGTGATGATGACTACAGGGCCCTGAAAACCTCC
ACAGGGAAAGCTCTGACCCATCCCTTTAATCTCCACTTTTGGTTTTAATAAGCAGCACACTCCACTGAGATTCACATCCC
CATCATGCTGCCCCAGAGAAATAGTTGTATAGTTATCAATACTAAATCCATTCTGTTCTTTCGGACAACTCACATCTGCA
GGGTGTTGGTTCCTTTGTGTCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGT
CTCTCTCTTGAAGCTGAGGAAAGGTAGCTGCATGCTCTCCTTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGC
TACTATCTCTTCGTCTTCGTCTTCGCGGCGCTCCTCTTGTCCTCTATGGCTGGTTAGCTATAGCTCCACATGGTCATTGC
ATTTATTTCCTTTTAGCTAGGTCATGTATGTGCTTTTCTCTTCTGTGCCTTTGTTAGTTCTTGTGCACCCGAGAATGTTG
GTTCTATCGCTTTGCTTCGGTTCTGACTTTTTGGAGTTTGTTTGAGGCAGGAGCGCAGAGGAAGCTGCTGATGAATGAAG
ATGATGCAGGATCGACGATGGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTT
GTGTCGTTATATTAGATTCCCTTTT--------------------AGCTAGCTAG----CTAGCAAGAAGTTCTTAGTAA
ACAAATAACGAATAATTAGGTA--ACGTGAGAAATTTGGAGAGATATACTCTTATGGAGTCATATTTACTAATGTCTTCA
AATAATGGACAAA--TTTTATTTCAAAAGAAGAATAATAAGTTTGGTAAATCAATTCCTTAATTAACTTGTCTCCCATCT
CCTCTTGG-CTGGAGAGCATAGAAATAGGACATGCAACACAAGTTGACTAGCTAGGCATAGGACTGATCGATGCAGTTTC
TCCCGACTAGAACACGGTTTT-TTCTATGCAGCAAACTCTGAATTATTTCGTGTATATAAA-------------------
--------------------------------------------------TATATGACGAACTGTAGTATTTGTTTGACG
AGTTAGCACAAACACTTCAGATTCTGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATCAAATCAA
AATCACAAATCATTTGAATCAAAATAGCACAAGCAGCAAGATGTACACTGCATGCGTCTTGTAATATGTCGGATCAAATA
AGCACTAGCATATCACCTCAGACCCTGGCACCCTGCTGCT-TGCACGGATACATGCATATGGTCATCCGTTTGTA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GTTGTAAATGATTACATGTATTGCTCTTGTATTGTTTGTTAGCTACTACTCCCTCCGTCTTAAAAAGTTTGTCCCTTAAA
TGGATGTATTTAACACCAAGTTAGTGCTAGATACATCCATTTGAGGAATAAGCTTGGGACAAGTTTTTTCGGACGGAGGG
AGTATTCTCTCTGTCCGAAAAAACTTGTCCCAAACCTATCTTTCAAATGGATGTATCTAGCACCAAGTTAATGCTAGGTA
CATCTATTTGAGGGACAAGCTTTTTCGAACGGAGGGAGTACGTACTTAGTAGCTAGCTAATTGTTTGTACCGCTCGTTAA
CTCTCGCGCATGCATGCGGTACTTAGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTCGTGCATGCATGCGTGCAT
GGAATCATCCATGCAGCAGCAGGAAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGA
CGAACGACTACGGGACCTATGACTCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATC
TACATATATATATGAGATCGACGGCTGGATATATATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGAT
GGCAGGGTTAAGGCTTTCATATAC----ATATATATGCGAGAATATGATGTGTGCTACATATTATTTGTCCCTGAATAAA
TCGTATCTCATGTATCAATGCACGACACGCGTGTGGAACTTATATATGTC--TATATGTATGTACACTAGTTTTGTGTGG
ATATATATACCTGGTGTGTGCATCCTTGTTTGGTACTCATGTTCGTTGATTACTCCTGCGCATGGCCCGCAAAAAAAAAA
GATTACTCCTGCGCATTTGATTATCTCCTCTGGATGTACAAAAAAGTTTGGTAGTGGTTGTATGCTCTTAGTTGATATAT
GT------------------------------------------------------------------------------
----------------TTAGGAAAAAAAAAACTTCAAATTGTGTCGTGGCTAACAGAAAAGCATAAAAGATACATATATC
ATCTCGAATGATTTTGTTATTTTAGAAATTAAGTAGTCTTGATTGTCAGATAGGGTGCCATTTTTTGTGCAAAAGTTTAC
TAAACTAATTTTGCAACAACACTACTCAACGACCGCAAACTGAACTCTAACAATTTCTGATTTTCATAAAGCATATCACT
AGCTCATGCAGATGCACGTCTGTTCGTGTCTTGTATGTTTTTTCATTATATTATTCATGCACGCTTGAGGATTGTAGTTA
TATAGAAAGAAAGTATTTTTTGTGCAAAAGTTTACTAAACTAATTTTGCAACAACACTACTCAACGACCGCAAACTGAAC
TCTAACAATTTCTGATTTTCATAAAGCATATCACTAGCTCATGCAGATGCACGTCTGTTCGTGTCTTGTATGTTTTTTCA
TTACATTATTCATGCACGCTTGAGGATTGTAGTTATATAGAAAGAAAGTAGGTACGTGGAACAAAGAATGAGACTGCAAG
GACTCCGTATTAATAGGA---------TTTTCAACAAGATATATATATAAATTAGACAAACCTATTTTGTCTCTTAAAAA
ATGATCATACGGACTTTGCTTGCATAAT----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3B_93
--------------------------------------------------------------------------------
------------GTCAAGAGCTAAGACGACAGAGACTGTCAAAC-AAAGGGACCACTACACATGGTATGTAGCTAAAAAT
GCAAGGATATGAGTAGTGAAAGTAAAATAGAGATAGCATAATTCTATGTCTGCATGCCGGAAAAGTAATTAGCCAGC-GG
CTTTTAACCCTCTGCAGCTCATCATAGTTTCAACCTCAAGTAAACTAGGACAGTTCCGGCCCGTTGGTGGTCACCATGTT
GCGTGCATGGCTGTCGCTGGTATATGGCATCTAACACCACTACTGCAGAACTCTGACCAATGTCCACCACTCTTGTGAAA
CCACTATATATAATCATAATACACAAAAATTATCCAGAGTTAATTAAAGATATTCCAACCTCTTAACTTGTGGCACCTAC
CAGCACCAGCACAGAGCCGAGCAACAACCAGTCTCAGCTGGATCTCGTTTTCACAGGATGACATTATTCAAAAGAAAGAC
AAATACGGTATGCCGTCATTGCACTCCAAGAATGAAAATGGTATATATGCTAGATTATATATTTGCACGGTCAGTTGCTT
TAGCTTCTGGGGCTAGTTAATCAAACAGGCTGCACCAGCAAGTCTAGTGTGATGATGACTACAGGGCCCTGAAAAACTCC
ATAGGGAAAGCTCTGACCCATCCCTTTAATCTCCACTTTTGGTTTTAATAAGCAGCACACTCCACTGAGATTCACATCCT
CATCATGCTGCCCCAGAGAAATAGTTGTATAGTTATCAATACTAAATCCATTCTGTTCTTTCGGACAACTCACATCTGCA
GGGTGTTGGTTCCTTTGTGTCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGT
CTCTCTCTTGAAGCTGAGGAAAGGTAGCTGCATGCTCTCCTTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGC
TACTATCTCTTCGTCTTCGTCTTCGCGGCGCTCCTCTTGTCCTCCATGGCTGGTTAGCTATAGCTCCACATGGTCATTGC
ATTTATTTCCTTTTAGCTAGGTCATGTATGTGCTTTTCTCTTCTGTGCCTTTGTTAGTTCTTGTGCATCCGAGAATGTTG
GTTCTATCGCTTTGCTTCGGTTCTGATTTTTTGGAGTTTGTTTGAGGCAGGAGCGCAGAGGAAGTTGCTGATGAATGAAG
ATGATGCAGGATCGACGATGGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTT
GTGTCGTTATATTAGATTCCCTTTTAGCTAGATTCCCTTTTAGCTAGCTAGCAAG----CTAGCAAGAAGTTCTTAGTAA
ACAAGGAACTAATAATTAGTTAACACGTGAGAAATTTGGAGAGATATACTCTTATGGAGTCAAATTTACTAATGTCTCCA
AATATTGGACAAGTTTTATATTTCAAAAGAAGAAGAATAAGTTTGGTAAATCAATTCCTTAATTAACTTGTCTCCCATCT
CCTCTTGGTCTGGAGAGCACATAAATAGGACGTGCAACACAAGTTGACTAGCTAGGCATAAGACTGATCGATGCAGTTTC
TCCCGACTAGAACACGGTTTTTTTCTATGCAGCAAACTCTGAATTATTTCAGATATATAAATACTTCCTCCATCCGGAAA
TACTTGTCATTTTATCCATTTTGAGGACAAGCATTTTCGGACGGAGGAAGTATATGACGAACTGCAGATC----------
-----------------------CTGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATAAAATCAA
AATCAGAAATCATTTGAATCAAACTAG----AGCAGCAAGATGTACACTGCATGCGTCTTGTAACATGTCGGATCAAATT
AGCACTAGCATATCACTTTAGACCCTGGCACCCTGCTGCTTTGCATGGATACACGCATATGGTCATCCGTTTGTACTCCC
TCCGTTCTCAAATATTTGTCTTTCTAGGCATTTTAAATGGACTCAACATACGAATGTATGTAGACATATTTTAAAGTGTA
GATTCACTCATTTTGCGCCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAGTACTCCCTCCGTAAACTAATATAA
GAGCGTTTAGATCACTACTTTAGTAATCTAAACGCTCTTATATTTGTTTACAGAGGGAGTATTTAGGAACGGAGGGAGTA
GTTGTAAATGATTACATGTATTGCTCTTGTATTGTTTGTTAGCC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGTAGCTCGCTAATTGTTTGTACCGCTCGTTAACTCTTGTGCATGCATGCGTGCAT
GGAATCATCCGTGCAGCAGCAGGAAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGA
CGAGCGACTACGGGAACTATGACCCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATC
TACATATATATCTGAGATCAACGGCTGGATATACATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGAT
GGCAGGGTTAATGCTTTCATATACATATATATATATGCGAGAGTATGATGTGTGCTACATATTATTTGTCCCCGAATAAA
TCGTATCTCATGTATCAATGCACGACACGCGTGTGGAGCTTATATATGTC--TATATGTATGTACACTAGTTTTGTGTGG
ATATATATACCTGGTGTGTGCATCCTTGTTTGGTACTCATG----TTCGTT-----------------------------
GATTACTCCTGCGCATTTGATTATCTCCTCTGGATGTACAAAAAAGTTTGGTAGTGGTTGTATGCTCTTAGTTGATACTC
CCTCCGTTCCAAAATAGATGACTCAATTTCGTACTAAATTTAGTACAAAGGTAGTACAAACTTGGGTCATCTATTTTGGA
ACGGAGGGAGTATATGTTAGGAAAAAAAAACCTTGAAATTGTGTCATGGCTAACACAAAAGCATAAAAGATACATAAATC
ATCTCGGATGATTTTATTATTTTAGAAATTAATTAGTCTTGATTGTCAGATAGGATGCCG-TTTTTGTGCAAAAGTTTAC
TAAACTAATTTTGCAACAACACTACTCAA-GACCGCAAACTGAACTCTAACAATTTCTGATTTTCATAAAGCATATCACT
AGCTCATGCGGATGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACGTCTGTTCGTGTCTTGTGTGGTTTTTCA
TTACATTATTCATGCACGCTTGAGGATTGTAGTTATATAGAAAGAAAGTAGGCGCGTGAAACAAAGAATGAGATTGTAAG
GACTCCGTATTAATAGGATTTTAAGGGTTTTCAACAAGATATATATAAAAATTAGACAAACCTATTTTGTCTCTTAAAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------S------S--------------------------------SSSSSS-S-SSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
-------------------------------------S----S------------------S------------------
--------------------S---------------SS------------------------------------------
------------------------------------S------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------------------------------------S----
------------------------------------------S-------------------------------------
-------S------S-------------------------S---------------------------------S-----
---------------S----------------------------------------------------------------
----S--------------------------------------------------SSSS---------------------
--------------S-----------------------S------------S----------------------------
--------------------------------------------S-----------------------------------
--------------S--------------------------------------------------S--------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------S-----------
-----------------------S-------------------------------------------------S------
--------------S----S------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------SS----------------------------
-----------------------------------------SSS------------------------------------
------------SS---------------S---------------S----------------------------------
--------------------------------------------------------------------------------
-------------------------S-----------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------S------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S---S---------------
---------------------------------S----------------------------------------------
------S-------------------S------------------S----------------------------------
------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_144
--------------------------------------------------------------------------------
--------------------------------------------CAAAGGGACCACTACGTGCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_1666
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TATCGATGCAGTTTC
TCCCGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_147
--------------------------------------------------------------------------------
-----------------------------------------------AGGGACCACTACGTGCTATG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_1940
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GAAACTAGCACAAGCAGCAAGA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1275
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GCAGAGGAAGTTGCTGATGAG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_4082
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GCATTGGCTAGAGCATGCAC-----------------------------------------------------------
-----------------------------------
