>input_sequence_58306
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----------------------------------------ATGGCGGACTCGTTGCCAGACGACGTAGTCATGGATATCC
TCTCGCGCATCAAGGAC---GTGCCCTCGCTCTTGCGCTGCGCCGCGGTGTGCAAAGGATGGCGCCGCCTCGTTGCCCGC
ATGGAGCGCGTGGGTGTCTTCGCTGGCTTCTTCACGCAGCTGCAGGCACGCGGGCAGCATACCACGCCGTGGTTTATCCC
GTCGCCCCGCCCGGTCCCGGTGGCGCTGGGACGTCGTCGCCGCCGTCTCAGCTCCCTCGTCCCAGACATCCGAGTCGCCG
GCTTCTTTGACTACGCAGTACCGCTCGTATCGCACCATGGCCTTCTACTGCTGCGCATCAACACCAATCTGCGCGGTGGC
ATCCTGGCCGTCTGCGATCTGCTCGCTGGCACCTTACGCGTACTCCCTTCTCTTCTAGGCTATAATTTGGATGAAGAGAT
GATGGGATACACCCTACTTACCAATAAGGACCGTGGGAGTTTGGACGATGACCAGCATCAGCGGCCATTCTTCTTCAAGG
TGGTGATTGTTACGATCCTCAAGAATCACGGCTATTATACGGAGTACAGTCTCCAGACATTCTCATCGGCCAACGAGACA
GGATGGAGCAGGTGCTCCGGCGACCTCTTGAAGGCCGGGAATCACAACATCCGCGTGGCATTTATGCAGCGTGAAGCTGT
TGTGTGCGGCAGCGCCGCGCACTGGCTCTTCTTCGGACTGCCTGCTGCAATCTACACTCTTGATTTGAGCAATGAAACTG
GACACGTCTCCATTACAGAATTGAAGGGCATAGATAATCTTTGGGTCTTAGGTGTTCTTTGCGTCTTAGGTCTGCGTGAC
AAACCATACCTTACCGTTGACACCGAGGCGAAGCTCATGTTGCTCTGCTTGCAGCAGGATGGTCACCAAGTGCAGATCTG
GACGTCGCGCGACAACAAGATGTTCTTCCAATCTTCAATACTCAAGTTAAAACAACGTGTCTGTAAATGCTTGGGAGAGA
AAAGCGGCATTGTGCTCTTCATGGATAAGCAGCGGGTTGTCTATCTTGCTGATGTCAAGACAGGGGTGATGCAGGAGGTG
ACCCAATGGCCATACAATATCGGCCTCTGCCGCCAAAATACCGTACTCGTGGAAATGGACTGGCCGGCCTTCTTTGCTTT
TCGGCTTGGTGTTGCAGGCACTTGA-------------------------------------------------------
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>chr3D_1_TraesCS3D01G545500
GTGGGCGTTAGTTTTTCCGAAAAACAATTAGCAATAGAAGCATAGTTTTGGTGCAGTGGAAACAAATATAAACTTTTTTT
TGGTAAAAACAACTTTTTATTTGCGTGGCAAGCAAATTTGGTAACATTGGATACAAAGGTTGCTTTATAAGGAAACAAAC
TGCACGGTGCACAAGCTTATTTCGCCGGATTGATTGTTTTCCGTTAAAATCAGTTTGTAAGATTTCTTTTGCTCCCTAAA
ATCATGGATTACTTCCCTCAAATCACGTGATCTGTGAACGGTTATTAGTTTCCTCCAATCACACAAGGCTGTGCACAGTT
ACTAGTTTCCTCTAATCACGCAAGGAAATTGCTTTCCTGACAACGTCCAACCATCTAATCAAACGCTAGCTCAGGTAGGT
TCAATTTAACGGTGATGAAGTAGTCTGATAGATTGATAGGGATCAGTAGTCCGATGTAACAAACAAACAAAGCATCCATC
GGTTCCTTTATAAAAAAGATAGCCTCCTTCAATGGTACCAAAAAAACATAGACTTCTTCCATATAAAACCCCGTGATGAA
AAGAAAAAAAAACAGATTTGTCAATAAAATCTTCTGTGAAAAAGGAAAAAGAATTACGAAAAAAAACAGAGGAAAGATAT
CTCACCGATAAAAAGGAAAGGGTGTGTCTAGGGCACATCTATATGTGCCGTAGTTATTGCACATCTAAGTAACTTAATCA
AGCATAAAAAGAAAAAGAAAAGAAGGGAAGAAAATACCCACACGAATCTTCGTGTAAGATCAATGATACAGGACTTAGAT
GTGCAATACTTATGGCACATCTAGATGTGCTTTATCAAAACTGAAAAGGAAAGACATCTCCCTCGACCCCACCTCCTCTT
ATCTATGGCCGGTGGTGGCGTTTAAAGTACACCCAACCTCTATGATATATATTGAGGGCCGTGAGGAGATCCAGATCGAT
TATCCCGCAACAGCGGGCAGGTTGATCGCACCAAAGAAACATGGCGGACTCGTTGCCAGACGACGTAGTCATGGATATCC
TCTCGCGCATCAAGGAC---GTGCCCTCGCTCTTGCGCTGCGCCGCGGTGTGCAAAGGATGGCGCCGCCTCGTTGCCCGC
ATGGAGCGCGTGGGTGTCTTCGCTGGCTTCTTCACGCAGCTGCAGGCACGCGGGCAGCATACCACGCCGTGGTTTATCCC
GTCGCCCCGCCCGGTCCCGGTGGCGCTGGGACGTCGTCGCCGCCGTCTCAGCTCCCTCGTCCCAGACATCCGAGTCGCCG
GCTTCTTTGACTACGCAGTACCGCTCGTATCGCACCATGGCCTTCTACTGCTGCGCATCAACACCAATCTGCGCGGTGGC
ATCCTGGCCGTCTGCGATCTGCTCGCTGGCACCTTACGCGTACTCCCTTCTCTTCTAGGCTATAATTTGGATGAAGAGAT
GATGGGATACACCCTACTTACCAATAAGGACCGTGGGAGTTTGGACGATGACCAGCATCAGCGGCCATTCTTCTTCAAGG
TGGTGATTGTTACGATCCTCAAGAATCACGGCTATTATACGGAGTACAGTCTCCAGACATTCTCATCGGCCAACGAGACA
GGATGGAGCAGGTGCTCCGGCGACCTCTTGAAGGCCGGGAATCACAACATCCGCGTGGCATTTATGCAGCGTGAAGCTGT
TGTGTGCGGCAGCGCCGCGCACTGGCTCTTCTTCGGACTGCCTGCTGCAATCTACACTCTTGATTTGAGCAATGAAACTG
GACACGTCTCCATTACAGAATTGAAGGGCATAGATAATCTTTGGGTCTTAGGTGTTCTTTGCGTCTTAGGTCTGCGTGAC
AAACCATACCTTACCGTTGACACCGAGGCGAAGCTCATGTTGCTCTGCTTGCAGCAGGATGGTCACCAAGTGCAGATCTG
GACGTCGCGCGACAACAAGATGTTCTTCCAATCTTCAATACTCAAGTTAAAACAACGTGTCTGTAAATGCTTGGGAGAGA
AAAGCGGCATTGTGCTCTTCATGGATAAGCAGCGGGTTGTCTATCTTGCTGATGTCAAGACAGGGGTGATGCAGGAGGTG
ACCCAATGGCCATACAATATCGGCCTCTGCCGCCAAAATACCGTACTCGTGGAAATGGACTGGCCGGCCTTCTTTGCTTT
TCGGCTTGGTGTTGCAGGCACTTGAGGTCTTCTCACTCTCTTTTGCAGTTCTAGGTGAGGCTTGGATGTATGGACGAATC
CTATACACATTAGGATTTGTTGATATGAAGTTTTCCTTACAGTTTACTCTTGTCGGGGTCAACTTGTATGCATGGTTGTT
TATCATTTTACTTTCTTATTAGGGCTACTCCAAGTTTTGTGTATTTATCCTAAAGATTCGTCATTTACAAATTATGTGTT
TTGTTCCTTCCATGTTTCATATATTAAATAATC-TTTTTATAAATTTCTCACTTAACTCTGAATCGGAACACATTAATTT
GACAATAGGAAGATGAGCTATGAACGTAGAGTGTTCAACTTATTTTGATGATGGAAAATGATTTAAAACCTTGCTATATG
GACATAGCTCACCACACTTTTCCGTGGTGTGATTACTTGCAAATACCTATTGTGTGTACAAAGATTTTGCCGATGTGGGA
GGATGAGGAACAAACATGGAAACACGTGAAGAGTATTCTGACAAATAACTAAGCCATGCCCATTTTTCATTAATATAAAA
TTCATATTCTCGATCTATGGGGGTGGGGTGGGGTGGGGTGGGTGTCGGTTCAATATCCGGCGTATCTCGTAGTAGGGGTC
CTAAGCTAGGCGACTGGGAGCGATGGTAACATGGACACGGGGTTTTACCCAGCTTCGGGCTCTCTTGATGAGATCATACC
CTACATGCTGCTTTTGATTGGATTCATATGGGTGTAGTACAGAATATATGTATCTACCACGAGATTGTAGTAATGAATAT
GAGATTGTCTATTGACTAGCCTGGCCTCGGTTTATATATGCACAGTAGGCCTAGGGTTTAGAGGAGTCCTTGTTTTGGGC
GCCAAGTCTTGTTAAATCCTCCTTGTATGCGGCATGGGCTGTCCGAACTGGCCCAATAGTGAACCGCCATGGGGGTCCTC
GGCCCAATCCAGCTGGTCGGGAGACGACGTGGTGAGTACCCCCTAGTTCAGGACACCGTCAGTAGA
>chr3B_946
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-----------------------------------------------------------------GAGGTCCAGATCGAT
CATCCTGCAACAGCGGGCGAGTTGCTCGCACCAAAGAAACATGGCGGACTCGTTGCCGGACGACGTGGTCATGGATATCC
TCTCACGGATAAAGGAC---GTGCCCTCGCTCTTCCGCTGCGCCGCGGTGTGCAAAGGGTGGCGCCGCCTCGTTGCCCGC
ATGGAGGGCGTGGGTGTCTTTGCTGGCTTCTTCACGCAGCTGCAGCCACGCGGGCAGCATACAACGCCGTGGTTCATCCC
GTCGCCCGGCCCGGTTCCGTTGGCGCTGGGCCGTCGTCGCCGTCGTCTCACCTCCCTCGTGCCAGACATCCGGGTCGCCG
GCTTCCTTGAATACGCGGTGCCGCTTGTATCGCACCATGGCCTTCTGCTGCTGCGCATCAACACCAACCTGGGCGGTGGC
ATCCTGGCCGTCTGCGATCCGCTCGCTGGCACCTTACGCGTACTCCCTTCTCTTCTAGGCTATAATTCTGGTGAGGACAT
GATGGGATACACCCTACTTACTAATAAGGACGGTGGGAGTTTGGACGATCACCAGCATCAGCGGTCATTCTTCTTCAAGG
TGGTGATTGTTACGATCCTCAAGAATCACGGCTATTATACGGAGTACAGTCTGCAGACATTATCATCGGCCGACGAGACA
GGATGGAGCAGGTGCTCCGGTGACCTCTTGAAGGCCGGAAATCACAACATCCGCGTGGCATTTATGCAGCGTGAAGCTGT
TGTGTGCGGTGGCGCCGCGCACTGGCTCTTCTTCGGAGTGCCTGCTGCAATCTACACTCTTGATTTGAGCATTGAAACTG
GACACGTCTCCATTACAGAATTGAACGGCATAGATAATCTTTGGGTCTTTGGTGTTCTTTGCGTTTTAGGGCTGCGTGAC
AAACCATATCTTACCGCTGACACCGAGGGGAAGCTCATGTTGCTCTGCTTGGAGCAGGATGGTCACCGGGTTCAGATCTG
GACGTCGTGCGACAACAAGATGTTCTTTCAATCTTCAATACTCAAGTTAAAACAACGTGTCTATAAATGCTTGGGAGAGA
AAAGCGGCACTGTGCTCATCATAGATAAGCTGCGGGTTGTCTATGTTGCTGATGTCAAGACAGGGGTGATGCAGGAGGTG
ACCCAATGGCCATACAATATCAGCCTTTGCCGCCAAAATACCGTACTTGTGGAAGTGGACTGGCCGGCCTTCTTTGCTCT
TCGGCTTGGTGTTGCAGCCACATGAGATCTTCTCACTCTCTTTTTTAGTTCTAGGTGCAACTTGGATGTCTGGACGAATC
CTATACACGTTAGGATTTGTT-----------------------------------------------------------
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>chr3B_949
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--------------------------------------------------------------------ATCCAGATCGAT
CATCGTGCAACAGCGGGCGAGTTGCCCGCACCAAACAAACATGGCCGACTCGTTGCCGGACGACGTGGTCATGGATATCC
TCTCACGCATCAAGGATCATGTACCCGCGCTCTTCCGCTGCGCCGTCGTGTGCAAAGGGTGGCGCCGCCTCGTTGCCCGC
ATGGAGGGCGTGGGTGTCTTTGTTGGCTTCTTCACGCAGCTGCAGGCACGCGGGCAGCATAGGACGCCGTGGTTCATCCC
GTCGCCACGCGCGGTCCCGCTGGCGCTGGGCCGTCGTCGCCGTCGTCTCAGCTCCCTCGTCCCCGACATCTGGGCCGCCG
GCTTCTTCGACTATGCGGTGCCGCTCGTATCGCGCCATGGCCTTCTGCTGCTGCGCGTCAACACCAATCTGCGCCGTGGC
ATCCTGGCCGTCTGCGATCTGCTCGATGGCACTTTACGCGTACTCCCTTCTCTTCTAGGCTATAATTCTGATGAAGACAT
GATGGGATACACCCTACTTACTAATAAGGACGGTGGGAGTTTGGACGATCACCAGCATCAGCGGTCATTCTTCTTCAAGG
TGGTGATTGTTACGATCCTCAAGAATCACGGCTATTATACGGAGTACAGTCTCTAGACATTCTCATCGGCCGACGAGGCA
GGATGGAGCAGGTGCTCCGGTGGCCTCTTGAAGGCCGGGAATCACAACATCCGCGTGGCATTTATGCAGCGTGAAGCTGT
TGTGTGCGGTGGCGCCGCGCACTGGCTCTTCTTCGGAGTGCCTGCTGCAATCTACACTCTTGATTTGAGCATTGAAACTG
GACACGTCTCCATTACAGAATTGAACGGCATAGCTAATCTTTGGGTCTTAGGTGTTCTTTGCATTTTAGGGCTGCGTGAC
AAACCATATCTTACCGCTGACACCGAGGGGAAGCTCATGTTGCTCTGCTTGGAGCAGGATGGTCGCCGGGTACAGATCTG
GACGTCGCGCGACAACAAGATGTTCTGCCAATCTTCAATACTCAAGTTAAAACAACGTGTCTATAAATGCTTGGGAGAGA
AAAGCGGGATTGTGCTCATCATGGATAAGCAGCGGGTTGTCTATGTTGCTGATGTCAAGACAGGGGTGATGCAAGAGGTG
ACCCAATGGCCACACAATATCGGCCTCTGCCGCCAAAATACCGTACTCGTGGAAATGGACTGGCCGGCCTTTTTTGCTCT
TCGGCTTGGTGTTGCAGGCACTTGAGGTCTTCTCATTTTCTTTTGTCGTTCTAGATGAGGCTTGGATGTATTGACGAACC
CTATACACATTAGGATTTGTTGACATCAAGTGTTCCTTACGGTTTACTCTTGTCGTGGTCAACTTGGACGCATGGTTGTT
TATCATTTTACTTTCTTATTAGGGCTACTCTAGGTTTTGTGTCTTTCACCTAAAGAT-CGTCATTTACAAATTATTTATT
TTGTTCCTTCCATCTTTCATATATTAAAATGTCTTTTTTATTAATTTCTCACTTAACTCTTAATCGGAACCAT-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
S----S------------SS----S--------------------------------S--------S-------------
----S-----------------------------S-----------------------S---------------------
------S-------------S-----------------------------------------S-----------S-----
-------------------S----------S-----------S-----------------------------S-------
----------------S--S--------------------------S---------------------------------
-------------------------------------------------------------------SS--------S--
---------------------S---------S-----------------S--------------S---------------
-----------------------------------------------------------------------S--------
--------------------S-----------------------------------------------------------
---------SS--------------------------S---------------------------------S--------
-------------------------S--------------------------------------S-----S---------
--------S-------S-----------S----------------------S---------------SS--S--------
--------------------------------------------------------------S-----------------
-----------------S--------------------------S-----------------------------------
------------------------------------------------------------------------------S-
---------------------------------------------S----------------------------------
-----------------------S--S----S--------S--------------S----------S-S-----------
------------------------------S-S---------S---SS---------S-----------------S-S--
-------------S--------------SSS----------S------------------S---------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_881
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-------------------------------------------------------------CTCGACCCCACCTCCTCTT
A-------------------------------------------------------------------------------
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>reverse_2825
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------------------------GGTAACATGGACACGGGGTT------------------------------------
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