>input_sequence_58272
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--------------AAACAACCATCACCTTCAAGCTTAGCTCCAGCCT--------------------------------
-----CCAGCCATCACTCAGCTCAA-GGCACAATCAGG------------------------------------------
-----CACTCATCGGCAGCAAGAAC--A--------CACA-------------GACCTTCAGCGTC----TCGGCGTCAA
TGGAGGCGA------GCCGGCAGTACATGATCCGCTTCGACGGCCACTTCGAG------GAGGGCCCG------AGCT--
----CCGCGGCCGC------CG------AGCCACCGCAGCCGTTCGCCGGCAGGGCTTTCTCGCCGGAGCAGGAGCAGAG
CGTCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACGCCACGCCGGCGCCGGACCTCTTCTTCCCG----------
--GCGGGCAAGGAGGCGTGCACGGCGTGCGGGGTGGACGGGTGCCTCGGCTGCGAGTTCTTCGGCGCCGAGGCCGGGCG-
--C---GCGGTCGCGGCATCGGACGCGCCGAGA------------GCGGCGACCGCTGGCGGGCCGCAGAGGAGGCGGAG
GAACAAGAAGAGCCAGTACCGCGGCGTCAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCATCTCCGCGA------------CGACAGCGGCAAT---GC
CGCGGCCAAGTCAGACGCGTGCTCTCCGTCGCCTTCGCCCCGCAGCGCGGA---------------------------GG
AGGAGGAAACAGGGGACCTGCTCTGGGACGGCCTGGTGGACTTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTC
CCGGTCG------ACAACACTTTGGATAAATTTCACGCACCGGGACAGAGACGATCGGGATCAGGGGTGCCCCTCTGCTA
CTAGTGTTAGACTATTAGCGAGGACAGTACCAGATAGACTGGTGTCAGTGC----------------------------G
CTTGTACGCCACTCC---TA-ATCCTGCTCACTGCTTGGTTAGCACACGTCCTAGCTTCGGTT----GTAATTCTGCATG
CATAAATAGGCACCCGATCAATGGAAAAGTTGTGTTC---------------------------------------AACC
ATACTCCCCTGTCATGTTGTATGTAG-----ACAAATCCTATTTTGGGCTTATTTGTTGGAACTACAATGACGGTT----
-----AACCAGGGGAAACCCCCTTTGCTCAATTTTT-TTGTTGGAACTCTAATGGTGTTTAGACCAAATTAA--------
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-----------------------------------
>chr1A_1_TraesCS1A01G370600
GAATGAGATTAGATTGTTATTGAGTCTTCATCAAACTTGTATTACTCATGTCGCACGCTCACAAAATAAAGCGAGCGACA
GGTTAGCTGCTTTTGATCGCGTTAATAATAGGACTGACTTGGTTAGGGTCAGGTCCTCCTGAGGTTTTAAAGATAGTTGC
TGAAGATTGTAATGATACTTTGATTGAATAATACAAGTATTGAGCCTGAAGAAAAAAATGGCCGTTTTTTTAAAAAACAC
ACAAAAAAATGGCCGTTTGTCTTTTTCTGATAAAGAAAGGAAAACACAACAAGCAATCCAGCTATTCCCTCCGTCACGGT
TTAGAAGGCACAGTTAAATTTGCATGCGTTTCCACAATAGACAAGGTTTAGGGCGCATTGCATTTATTTCTAGTAGCTAA
TTAGTATTCCATATACTATTTCTATATGCATGCATGCATAGTGTGAATGCTATTTTTTAGCCCCTCTCATAACCAATAGA
TAATCACCTAGGTCCCAGAGAATTTCCAAACGCGCCTTCTAAACCGTGACGGAGGTAGTACTACTAATAGGGTGCATGAG
GCATCAGCCGACTTC-GACGCCACGTGAGGCGAGCAAAACCACATGA--CAATCATCCATTTGACCCTTTCGACGGACGG
ACTGACGGACCGACCTTATCCGTAACGATTCCAGG--CCCTGATGGGCCATGGGTCCATCACATCCCGATCCC-ACTCTC
TCCTCCTTCCACTAGCGTCACTGCTGGCGAT-------CCCATCGCGTCCACACGCTGAGGCTGTCGGCTCGGCTCGGCT
GTCCCTCGTCTGGAGGGCAATACCGGAATAAACA-------------AATAAACAAAAC------CAACAAACAAACCCA
AGGCCCCCCAACGCGCACGTTTCGCACGCGTT-GATGAGCTTTCCCCCATCCAAAGA-----AATGGTCGGTGCCCTCTG
TTTTGCATGCGCCTGCGCCGCGTCCCCTGCGACGTCGACCGGAGCATATATATACCTCTC-C---CCCCGGACTC-----
-------CCACTTCAAACAACCATCACCTTCAAGCTTAGCTCCAGCCT--------------------------------
-----CCAGCCATCACTCAGCTCAA-GGCACAATCAGG------------------------------------------
-----CACTCATCGGCAGCAAGAAC--A--------CACA-------------GACCTTCAGCGTC----TCGGCGTCAA
TGGAGGCGA------GCCGGCAGTACATGATCCGCTTCGACGGCCACTTCGAG------GAGGGCCCG------AGCT--
----CCGCGGCCGC------CG------AGCCACCGCAGCCGTTCGCCGGCAGGGCTTTCTCGCCGGAGCAGGAGCAGAG
CGTCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACGCCACGCCGGCGCCGGACCTCTTCTTCCCG----------
--GCGGGCAAGGAGGCGTGCACGGCGTGCGGGGTGGACGGGTGCCTCGGCTGCGAGTTCTTCGGCGCCGAGGCCGGGCG-
--C---GCGGTCGCGGCATCGGACGCGCCGAGA------------GCGGCGACCGCTGGCGGGCCGCAGAGGAGGCGGAG
GAACAAGAAGAGCCAGTACCGCGGCGTCAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCATCTCCGCGA------------CGACAGCGGCAAT---GC
CGCGGCCAAGTCAGACGCGTGCTCTCCGTCGCCTTCGCCCCGCAGCGCGGA---------------------------GG
AGGAGGAAACAGGGGACCTGCTCTGGGACGGCCTGGTGGACTTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTC
CCGGTCG------ACAACACTTTGGATAAATTTCACGCACCGGGACAGAGACGATCGGGATCAGGGGTGCCCCTCTGCTA
CTAGTGTTAGACTATTAGCGAGGACAGTACCAGATAGACTGGTGTCAGTGC----------------------------G
CTTGTACGCCACTCC---TA-ATCCTGCTCACTGCTTGGTTAGCACACGTCCTAGCTTCGGTT----GTAATTCTGCATG
CATAAATAGGCACCCGATCAATGGAAAAGTTGTGTTC---------------------------------------AACC
ATACTCCCCTGTCATGTTGTATGTAG-----ACAAATCCTATTTTGGGCTTATTTGTTGGAACTACAATGACGGTT----
-----AACCAGGGGAAACCCCCTTTGCTCAATTTTT-TTGTTGGAACTCTAATGGTGTTTAGACCAAATTAACTATTTAT
AGTGTAAATTTTCATAAATTTTAAATCATGGCACCCTAGTGTTGAGATCCTAGGCTCGCCATTGAAGACGATCACAATCG
GAGCCACTCTCCACTCTCACCGACTAGGCGAACCCACATGGCATAAATGTTCATTGGCAAGCAATGTTAGCATGAGCTCT
TTCCCCTTTCTCGTTTAATATATGATATGTACACTCGTGCGGATTCGAGAAGAAAAAAAAAGCAATGTTAACATAAGCTC
AATGCTGCATGGTTTAAATGACCATATGAC--AATCCGTTGCCGAATATCTTGGAGGCTATGAGCTTAAACAACGCCAAC
ATAGTGCGGCACCTCTAACAATTATGCAAGATAG-ATCCAATGGTGACTGCACCGTAATTTCGAACATAAATGGCCGGGT
GGACATAATGCGGCCGACGCATCAGTTTCAATGAAAAACCTTGATGGCACCTGAGATAGATTCGATGGACAATAATCTTA
GATTTACAGGTGTCGCCTAACGGAAGGTACGGACGGATGGGGTGTGCTCCTTTAAGACCTTGTTTGGTTGCAGCGTGAGC
ATTCCCAGGGCAGCAAAACCCCAACGGGGGGATTTCCCTGGTAGGTGGGATTCCTCCTACCACCACGGGGGATATTTCCT
TTGCCATTTGGTAACAGGTGGATGGGGAAAAACTGAGGCCTTCTTTGGTTCATAGGATAGGAATTTTATAGGAATAGGAA
AATCATAGGAAGTGAGATGACATGTATGTCAATTTCTATAGAGAAAGAGATGTCATTTGATACATAGGATAGGATTTTTT
TCATTGAGTCTAGGCTAATGTTTTTTTTCCTCCAAAACGTGAAGGATTGATTCCTATCCTACATAGGAATAGGAATCCAT
TCCTACAAACCAAAGTGCTTCAAAGAAATTTTTCCTTTGCAAATCCTATCCTATAGAATTCCTACAAAAATCCTACAAAC
CAAAGGAGGCATGAATCGTTCTAGCGTCTGAATCA
>chr1D_541
--------------------------------------------------------------------------------
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------------------------------------------------------------CTACTAGTAGGGTGCAT---
-CATCAGCCGACCTC-GG-GCCACGTGAGGCGAGCAAAACCATCTGA--GAACCGTCTCTTTGACCCTTTCAACGAACGG
ACTGACGGACCGACCTTATCCGTAACGATTCCAAG--CCCC-ATGGGCCATGGGTCCATCGCATCCCGATCCCCACTCTC
TTCTTCTTCCACTAGCGTCACCGCTGGCGAT-------CCCATCGCGTCCACACGC--AGGCTGTCGGCTCGGCTCGGCT
GTCCCTTCCCTGGAGGGCAATACCGGAATAAACA-------------AA--------ACAAA--------------CCCG
GGCACCCCGAACGCGCACGTTTCGCACGCGTT-GTTGAGCTAGCCCCCATCCAAA-ATCCAAAATGGTCGGTGCCCTCTG
TTC------TGCATGCGCCGCGTCCCCTGCGACGTCGACCGGACCATATATATACCTACCTCCCTCCCCAGACTC-----
-------TCACTTCAAACAACCATCACCACCGAGCTAC-CTCCAGCCT--------------------------------
-----CCAGCCATCACTCAGCTCAAAGACACAATCAGG------------------------------------------
-----CAATCAGCGGCGGCGAGAAC--A--------CACACAGAGTCACAGATGACCTTCAGCGTC----TCGCCGGCGA
CGGGGGCGA------GCCAGGAGTACATGATCCGGTTCGACGGCCACTTCGAG------GA---CCCG------AGCTCC
GCGGCCGCGAGCGC------CG------AGCCACCCCTGCCGTTCGCCGGCAGGGCTTTCTCGCCACAGCAGGAGCAGAG
CGCCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGCCTGACCTCTTCTTCCCG----------
--GCGCGCAAGGAGGCGTGCACGGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAGTTCTTCGGCGCGGAGGCCGGGCG-
--C---GCGGTCGCGGCATCGGACGCGCCGAGA------------GCGCCGGCGGCCGGCGGGCCGCAGAGGAGGCGGAG
GAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCAGCAGCAGCAGC------TAGGCGGCAGCGGCAAT---GC
CGCGGCCAAGTCAGACGCGTGCTCGCCCTCGCCTTCGCCCCGCAGCGCGGA---------------------------CG
AGGACGAAACAGGGGACCTGCTCTGGGACGGCTTGGTGGACTTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTC
CCGGTCG------ACAACAC---GGATAAATTTCACATAGAGGGGAAGAGACGATCAGGATCAGGGGTACCCCTCTGCTA
CTAGTGTTAGACTATTAGCGAG-----TACCAGATAGACAATCAG-----------------------------------
---------CAGTCC---TA-ATCCTGCTCACTACGTGGTTAGCACACGTCCTAGCTTCGGTT----GTAATTCTGCAT-
---AAATAGGCACCCGATCAATGGAAAAGTTGTGTTC---------------------------------------AACC
ATACTCATCTGCCATGTTGTATGTAG-----ACAAATCCAATTTGGGGCTTATTTGTTGGAACTATAATGGTTTCTATTA
ATAGAAACCAGGGGAAACCCCTTTTGCTCAATTTTT-TTGTTGGAACTCTAATGGTGTTTAGACAAAATTAACTATTTAT
AGTGTAAATTTGCATACATTTTAAATCATGGCACCCTAGTGTTGAGATCCT-GGTTCGCCAATGAAGACGATGACAATCG
GAGTCACTCGCAACTCTCACCGACTAGGCAAACCCACATGACATAAATGTTCATTGGCAAGCAATGTTA-----------
----------------------------------------------------------------------ACATTAGCTG
GATGCTACATGGTTTAAATGACCGTATGACCGAATCCGTTGCCGAATATCTTGGAGGCTATGAGCTTAAACAATGCCAAC
GTATCGCGGCACCTCTAACGTTTGTGCAAGACAG-AGCCAATGGCGATGGCATCGTAATTTCGAACAGAAATGGCCGGGT
GGACATAATGCGGCCGACGCATCAATTTCAATAGGAAACCTTGACGGTACCTGAGATAGATTCCATGGACAATAATCTTA
GACTTACAGGTGTTGCCTAACGGAAGGTACGAACCGATGGCGTGTGCTCCTCTAA-------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr1B_561
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
GCATCAGCCGACCTC-GGCGCCACGTGAGGCGAGCAAGACCATCC----------TCTCCTTGACCCTTTCAACAGACGG
GCCGACGGACCGACCTTATCCGTAACGATTCCAGG-CCCCC-ATGGGCCATGGGTCCATCGCATCCCGATCCC-ACTCTC
TGCTTCTTCCACTAGCGTCACTGCTGGCGAT-------CCCCTCGCGTCCACACGC--AGACGCTG--------TCGGCT
GTCCCTCGCCTGGAGGGCAATACCGGAATAAACA-------------AA--------AC------CAACAAACAAACCCG
AGGCCCCCGAACGCGCACGTTTCGCACGCGGTCGATGAGCTAGCCCCCATCCAAA-ATCCAAAATGGTCGGTGCCCTATG
TTA------TGCATGCGCCGCGTCCCCTGCGACGTCAACCGGAGCATATATATACCTCTC-CCCTCCCCCCAGAC-----
-------TCACTTCAAACAACCATCACCCCCGAGCTA--------CCT--------------------------------
-----CCAGCCATCACTCAGCTCAA-GACACAATCAGG------------------------------------------
-----CACTTATCGACAGCAAGAAC--A--------CACA-------------GACCTTCACCGTCACTGTCGGCGTCAA
TGAAGGCGA------GCCGGGAGTACATGATCCGCTTCGAAGGCCACTTCGAG------GAGGACCCG------AGCT--
----CCACGACAGC------CG------AGCCACCACTGCCGTTCGCCGGCAGGGTTTTCTCGCCAGAGCAGGAGCAGAG
CGTCCTGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCACCGGCCTTCTTTTTCCCG----------
--GCGAGCAAGGAGGCGTGCTCGGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAGTTCTTCGGCGCGGAGGCCACCGG-
--C---GCGATCGCGGCATCGGACGCGCCGAGA------------GCGGCGACCGCTGGCGGGCCGCAGAGGAGGCGGAG
GAACAAGAAGAACCAGTACCGTGGCGTCAGGCAGCGGCCCTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGTGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCAGCAGC------------TGGGTGGCAGCGGCAAT---GC
CGCGGCCAAGTCCGACGCGTGCTCGCCGTCGCCTTCGCCACGCAGCGGGGA---------------------------CG
AGGAGGAAACAGGTGACCTGCTCTGGGACGGCTTGGTGGACTTGATGAAGCTGGACGAGAGCGACCTCTGCTTGCTGCTC
CCGGTCG------ACAACACCTTGGACATGCTTCACGCACCGGGACAGAGACGATTGGATGC---------------CTA
TTAGTGCTAGACAAAT----------------GTTAGACTAGTGTCACTGTGCAGCAGA------T---CAATCAACACA
CATTGTACGACGGTCCTGGA-------------TCCTGGTTAGCACACGTCCTAGCTTCGGTT----GTAA---------
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-----------------------------------
>chr1B_561
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GCATCAGCCGACCTCTGGCGCCACGTGAGACGAGCAAAACCACATGA--C---------TTTGACCGTTTCAACAGACGG
ACTGACGGACCGACCTTACCCGTAATGATTCCAGGGCCCCC-ATGGGCCATAGGTCCATCACATCCCGATCCC-ACTCT-
-----CTTCCACTAGCGTCACTGCTGGCGAGTGGCGACCCCCTCGCGTCCACACGCAGACGCTGTCGGCTCGGCTCGGCT
GTCCCTCCCCTGGAGGGCAATACCGGAATAAACA-------------AA--------ACAAAAACCAACAAACAAA----
------CCGAACGCGCACGTTTCGCACGCGTT-GATGAGCTAGCCCCCATCCAAA-A-----AATGGTCGGTGCCCTCTG
TTCTGCTTCTGCATGCGCCGCGTCCCCTGCGACGTCGACCGGAGCATATATATACCTCTC-CCCTCCCCAGACTC-----
-------TCACTTCAAACAACCATCACCACCGATCTA--------CCT--------------------------------
-----CCAGCCATCACTCAGCTCAA-GGCACAATCAGG------------------------------------------
-----CACTCAGCGGCCGCAAGGGC--ACACATACG-ACA-------------TACCTTCAGCGTC----TCGGCGTCAA
TGGAGAAGA------GCCGGCAGTACATGATCCGCTTCGAGG------------------A---CCCG------AGCT--
----CCGCGGCCGC------GG------AGCCACAGGTGCCGTTCGCCGGCAAGGTTTTCTCGCCGGAGCAGGAGCAGAG
CGTCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGCCGGAGTTCTTCTTCCCG----------
--GCGAGCAAGCAGGCGTGCTCGGCGTGCGGGATGGACGGATGCCTCGGGTGCGGGTTCTTCAGCGCGGAGGCCGGGCG-
--C---GCGATAAAGGCATTGGACGCGCCGAGA---GCGCCGGCCGCGGCGACGGCTGGCGGGCCGCAGAGGCGGCGGAG
GAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCCTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGAGACGGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCAGCAGCAGCAGCAGCAGCTAGGCGGCAGCGGCAATGCCGC
CCCGGCCAAGTCAGACGCGTGCTCGCCGTCGCCTTCGCCCCGCAGTGCGGA---------------------------CG
AGGGGGAAACAGGGGACCTGCTCTGGGACGGCTTTGTGGACTTGATGAAGCTGGACGAGAGCGAGCTCTGCTTACTGCTC
CCGGTCG------ACAACACTTCGGATAAATTTCACGCACCGGGACAGAGACGATTAGGATCAGGGGTACCCCTCTGCTA
CTAGTGT-AGACTGTTGGCGAGTA---TACCAGATAGAGTGGTGTCAGTGTGCGTGTCATCTCAATCAGCAGTCAGCACA
CTTGTATGCCACTCC---TA-ATCCTGCTCACTACGTGGTTAGCACACGTCCTAGCTTCGGTT----GTAATTCTGCAT-
---AAATAGGCACCCGATCCATGGAAAAGTTGTGTTGAACCATACTCCTCTGTCCTTCGCAAAAAAAAAAAAAAAGAACC
ATACTCCTCTGTCATGTTGCATGTAG-----GCAAATCCTATTTTGGGCTTATCTGTTGTAAATATAATGGTTT------
----AAACCAGGGGAAACCCCTTTTGCTCATTTTTTGTTGTTGGAACTCTAATGGTGTTTAGTCCAAATTAACTATTCAT
AGTGTAAATTTTCATAAATTTTAAATCATGGCACCCTAGTGTTGAGATCCTAGGTTTGGCACCGAAGATGATCACAATCG
GAGTCACTCGCAACTCTCATGGACTAGGCGAACCCACATGGCATAAATGTTCATTGGCAAGCAATGTTA-----------
----------------------------------------------------------------------ACATGAGATG
GATGCTACATGGTTTAA-TGACCATATGAACGAATCCGTTGCCAAATATCTTGGAGGCTATGAGCTTAAACAACGCCAAC
ATATTGCGGCACCTCTAACATTTGTGCAAAGACAAAGCCAATGGTGAAGGCACCATAATTTCAAACAGAAATGGCCGGGT
GTACACAATGCGGCCGATGCATCAATTTCAATAGGAAACCTTGATGGCACCTGAGATAGATTCGATGGACAATAAT----
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-----------------------------------
>chr1D_566
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-----AGCCGACCTC-GGCGCCACGTGAGGCGAGTAAAACCAACCGTCGC---------TTTGACGCTTTCAACAGACGG
ACTGACGGACCGACCTTATCCGTAACGATTCCAGGTT--CC-ATGGGCCATGGGTCCATCACATCCCGATCCC-ACTCT-
----TCTTTCACTAGCGTCACTGCTGGCG------------------TCCACACGCTGAGGCTGTCGGCTCGGCTCGGCT
GTCCCTCCCCTGGAGGGCAATACCGGAATATAATAAACAAAACCAACAA--------ACAAA--------------CCCG
AGGCCCCCGAACGCGCACGTTTCGCACGCGTT-GTTGAGCTAGCCCCCATCCAAA-ATCCAAAATGGTCGGT-CCCTCTG
TTC------TGCATGCGCCGCGTCCCCTGCGACGTCGACCGGACCATATATATATAT------CTCCCCTGCCTC-----
-------TCACTTCAAACAACCATCACCACCTAGCTCCAGGACGGACACAGACGATCTCTGCAGAGCTCCCTCTTCAGAC
AACACCCAGTCATTACTCAGCTCAA-GACACAATCAGG------------------------------------------
-----CAATCAGCGGCAGC-------GA--------GA------------GATGACCTTCAGCCTC----TCGGCGTCAA
TGGAGGAGA------GCCGGGAGTATATGATCCGATTCGACTGCCACTTCGAG------GA---CCCG------AGCT--
----CCGCGAGCGC------CG------AGCCACCGCTGCCGTTCGCCGGCAGGGTTTTCTCGCCAGAGCAGGAGCAGAG
CGCCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGCCGGACCTCTTCTTCCCT----------
--GCGAGCAAGGAGGCGTGCACAGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAGTTCTTCGGCGCGGAGGCCGGGCG-
--C---GCGGCCGCGGCATCGGACGCGCCGAGA------------GCGGCGACGGCTGGCGGGCCGCAGAGGAGGCGGAG
GAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGACGCCGCCAGGGCCTACGACCGCGCGGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCAGCAGCAGCAGCAGC---TAGGCGGCGGCGGCAAT---GC
CGCGGCCAGGTCAGACGCGTGCTCGCCCTCGCCTTCGCCACGCAGCGCGGA---------------------------CG
AGGAGGAAACAGGGGACCTGCTCTGGGACGGCTTGGTGGACCTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTC
CCGGTCG------ACAACACCTTGGA------------------------------------------------------
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-----------------------------------
>chr1D_933
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----------GCATGCGCCGCGTCCCCTGCGACGTCGACCGGAGCGTATATATT--T------CTCCCCCGCCTCACTTG
TTCCCCATCACTTCAAACAAC-----------------------------------------------------------
-ACCCACGGCCATCACACAGCTCAA-GTGGAGCTCCCACTTCAGAGTTCAGACAACACCCACAGTCAGCTCTCAGCCCCT
CAGCTCAATCAACGGCAGCAGGAAC--ACACACGCGGA------------GATGACCTTCGGCTTA----TCGCCGACAC
TGGATGCGA------GCCAGGAGTACATGATTCGGTTCGACGGCCACTTCGAGTTCGAGGA---CCCGTCGACCGT----
-----------CGA------GC------CGCCGCCGCCGCCGTTCGCGGCCAGGGCGATCTCGTCCGAGCAGGAGCATAG
CGCCATGGTCGCCGCGCTGCTGCACGTCATCTCAGGGTACGCCACGCCGGTGCCGGACTTCTTCTTCCCG----------
--GCGAGCAAGGAGGTGTGCCCGGCGTGCAGGATGGATGCGTGCCTCGGGTGCGAGTTCATCGGCGCGGAGGCCAGGCC-
--GCCGGCGGCGGCTGCATTGGACGCACCGAA---------------GGCGGCGGCGGGCGGGCCGCAGAGGAGGCGGAG
GAACAAAAAGACCCAATACCGCGGCATCAGGCAGCGGCCATGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCCCATTCCCCGAGCAGCAGCAGCAGCAGC------TGGGCGGCAGCGGCAAT---GC
CACGGCCAAGTCCGACACGTGCTCGCCCTCGCCCTCGCCACGCAGCCCGGA---------------------------CG
GGGAGGAAACAGAGGAACAGCTCTGGGATGGCTTGCAGGACTTGATGAAGCTAGACGAGAGCGAGCTTTGCTTACTGTTC
CCGGTGGCGGTCAACAACACCTTGGAAATGTTTCACGCGCCGGGAAAGAGACGACCAGGGGCCGATCTAGGGGGTATCAT
GGC------------------------TAGCAGTTAGACCAGTGGCAGTGCGCGCGCGTGT-CTCT---CAATCAACACG
CATGTACACGACTTC---TAGATCCTGTTCAATACGTGGTTAGCACACGTACTAGCTTTGGTT----GTAATTCTGTAT-
---AAATAGGCACCCGATCAACGGAAAAGTTGTGTTGAACCATACTCCTCTTTC--------------------------
-------------ATGCAGTATGTACTTAACACGAATGCTATTTTTAGATTATTTGTTGGCACTA---------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr1B_1080
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------------------CAAGAACAGA--------CA------------CATGACCTTCAGCGTC----TCGGCGGCGA
TGGAGGGGGGCCACGGCCACGAGTACATGATCCGCTTCGACGGCCACTTGGAG------GA---CCCGTCGCCCAGCA--
----CCGCCACCGCCGAGCCGC------CGCCACCGCCGCCGTTCGCGGGCAGGGCGATCTCGCCGGAGCAGGAGCACGG
CGCCATGGTCGCCGCGCTGCTGCACGTCATCTCCGGGTACACCACGCCGCCGCCGGACTTCTTC---CCGGCGGCCGC--
----GAGCAAGGAGGTGTGCCCGGTGTGCAGGGTCGACGGCTGCCTCGGCTGCGAGTTCTTCGGCGCGGCCGAGGCCACC
GGGGCGACCGCGGCGGCATTGGACGCGCCGAAA---------GCGGCGGTGACTGCGGGCGGGCCGCAGAGGCGGCGGCG
GAACAAGAAGAACAAGTACCGGGGCGTCAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACGCCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCAGCAGCAGCAGC------TGGGCGA---CGGCAATGCCGC
CGCGGCCAAGTCCGGCACGTGCTCGCCCTCGCC-----------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr1A_1082
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------AGAAC--A--------CA------------CATGACCTTCAGCGTC----TCGCCGGCGA
TGGCGGGGGGGCAGGGGCACGAGTACATGATCCGCTTCCACAGCCACTTCGAC------GA---CCCGTCGCCGAGCA--
----CCGCCACCGCCGAGCCGC------CGCC---------GTTTGCCGGAAGGGCGATCTCGCCGGAGCAGGAGCACGG
CGCCATGGTCGCCGCGCTGCTGCACGTCATCTCCGGGTACACCACGCCGCCGCCGGACTTCTTCTTCCCG------GCCG
CCGCGAGCAAGGAGGTGTGCCCGGTGTGCAGGGTCGACGGCTGCCTCGGCTGCGAGTTCTTCGGCGCGGCGGAGGCCACC
GGGGCGACCGCAGCGGCATTGGACGCGCCGAAGTCGGCACCGGCGGCGGTGACCGCGGGCGGGCCGCAGCGGAGGCGGAG
GAATAAGAAGAACAAGTACCGGGGCGTCAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCAGCAGCAGCAGCAGC---TGGGCGA---TGGCAATGCCGC
CCCGGCCAAGTCCGACACGTGCTCGCCCTCGCCC------AGCAGCGCGGAAGTCGATGTCCGGGTCCCGCGGAACGGCG
GGCAGGAAACAGGGGATCAGCTCTGGGACGGCCTGCAGGACCTGATGAAGCTAGACGAGAGCGAGCTCTGGTT-------
--------------------------------------------------------------------------------
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-----------------------------------
>chr1D_1085
--------------------------------------------------------------------------------
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-----------------------AC--A--------CG------------CATGACCTTCAGCGTC----TCGGCGGCGA
TGGAGGGGG------GCCACGAGTACATGATCCGCTTCGACGGCCACTTCGAC------GA---CCCGTCGCCCAGCA--
----CTGCCACCGCCGAGCCGCCGCCAGCGCCGCCGCAGCCGTTCGCGGGCAGGGCGATCTCGCCGGAGCAGGAGCACAG
CGCCATGGTCGCCGCGCTGCTGCACGTCATCTCCGGGTACACCACGCCGCCGCCGGACTTCTTC---CCG------GCGG
CCGCGAGCAAGGAGGTGTGCCCGGCGTGCAGGGTGGACGGCTGCCTCGGCTGCGAGTTCTTCGGAGCGGAGGCAGGGACA
GGGCCGGTCGCGGCGGCATTGGACGCGCCGAAGGTGACT------GCGGCGACGGCGGGCGGGCCGCAGAGGCGGCGAAG
GAACAAGAAGAACAAGTACCGGGGCGTCAGGCAGCGCCCGTGGGGCAAGTGGGCAGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCATCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAATTTCCCCTTCCCCGAGCAGCAGCAGCAGC---------TGGGCGA---CGGGAATGCCGC
CGCGGCCAAGTCCGGCACGTGCTCGCCCTCGCCC------CGCAGCGCCGA-----------------------------
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>chr1A_1112
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-----------------------------------------------------------------------------CAA
TGGATGCGA------GACAGGGGTACATGATTCGGTTCGACGGCCACTTCGAGTTCGAGGA---CCCGTCGACCGC----
-----------CGA------GC------CGCCGCCGCCTCCGTTCGCGGCCAGGGCGATCTCGTCTGAGCAGGAGCATAC
CGCCATGGTCGCCGCGCTGCTGCACGTCATCTCAGGGTACACCACGCCGGTGCCGGACTTCTTCTTCCCG------GC--
----GAGCAAGGAGGTGTGCACGGCGTGCGGGATGGATGGGTGCCTCGGGTGCGAGTTCTTCGGCGCGGGGGCCAGGCC-
--G---GCGAT------------CGCACCGAA---------------GGCGACGGTGGGCGGGCCGCAGAGGAGGCGGAG
AAACAAAAAGACCCAGTACCGCGGCATCAGGCAGCGACCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCG
CCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGACGCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGC
GGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCAGCAGCAGCAGCAGC---TGGGCGGCAGCGGCAAT---GC
CGCGGCCAAGTCAGACACGCGCTCGCCCTCGCCGTCGCCCAGCAGCGCGGA---------------------------CG
GGGAGGAAACAGAGGAACGGCTCTGGGATGGCTTGCATGACTTGATGAAGCTAGACAAGAGCGAGCTCTGCTTACTTTTT
CCGGTGGGGGTCAACAACACCCTGGAAATGTTTCCCGCGCCGGGAAAGAAACGACCCGTGGCCGATCTAGCGGGTGTCAT
GGCAAATGTTTGCTAGCAGTTACG----------TAGATTAGTGTCAGCGTGCGTTTGTCTCCTCT---CAATCAACACA
CATGCACATTAAGGACAGTAGATCCTGCTCACTTCGTGGTTAGCACGTGTCCTACCTTCGGTTGTAAGTAATTCCGTAT-
---AGATAGGCACCCGATCAATGGAAAAGTTGTGTTGAATCATACTCCTCTTTC--------------------------
-------------ATGTAGTATGTGCTTAACACGAATGCTATTTTGGGATTATTTGTTGGAACTA---------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----------SSS
------------S----S----------------------------------S-S--SS------------S--------
----------------------------------------SS--------------------------------------
-S--S---------------------------------------------------------------------------
--------S----------------------------------------SSSSSSSS----------------------S
--------S--------------------------------SS------------S------------------------
--S---S-SS--S--------------------------------------------------------S----------
-------S--------------------SS-S----SSS-----------------------------------------
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---------------------------------------------------------------S----------------
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-----S-------------------------------------------------------------S------------
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-----------S--------------------------------------------------------------------
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-----------------------------------------S-SS-SSS-------------------------------
------------------------S-----------------------------------------------------S-
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--------------------------------------------------------------------S-----------
----------------------S-SSS-----------------------------------------------------
---------------------------------S-S-------------------------------------------S
SSS-----------------------------------------------------------------------------
-------S---------------------------------------------------------S----SSSSS-----
---------------------S----------------------------------------------------------
------------------------------------------------------S------S------------------
---S-----S-S---------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----S
S-----S-------------------------------------------------------------------------
---S----------------S--S-------S----S----------SS------------------S------------
------------------------S-------SSS---------------------------------------------
--S----------S-----------------S--S-----S----------S---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_316
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--------------------------------------------------------TCCAGCTATTCCCTCCGTCA----
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>reverse_2471
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----------------------------------------------------------------------ACGGTTAACC
AGGGGAAACC----------------------------------------------------------------------
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>forward_969
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---------------------------------------------------------------------GGTGCCCTCTG
TTTTGCATG-----------------------------------------------------------------------
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>reverse_3120
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-------------------------------------------------------------------------------C
ATTCCCAGGGCAGCAAAAC-------------------------------------------------------------
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-----------------------------------
