>input_sequence_58251
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---------------------------------ATGAAAGACACTATGGGGGTTCCGCCCGAACCCTATGACTGGCCCAA
CATCTGCCCGCTCCCCGGGTCGTCCAGAGATCGGAGGTCTGCGTGTGATCTTTACTGGCACCAGGCCTACCAGATGAATC
AAGTCTCCGAGAGTAAGCAGCTCAACTGCAAGCTCTCTCTCCGTGTTACAATACAATACACATTTCTGTCTAGATTGTTT
TTGCTGCATCATTCTTGTGTTTAATATGTTGCTCCCTGCCTGCCTTTGAATGAATAGCTTGCCTGCCTCCTATGCGGTAT
ACTCGCTGTTGCAATGAAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCGCGCCCTATACTCCAACTCTTTTCTAC
CACGGTGCATACCTTTCTGGAAGATTGCACCAGACCAGTCGAGGTATACGGTTATATTGCGGTCCGAGATGACGAGGATT
ATCGCCGCAATTATCTTTTCAACCGATCCCGAGATGACCCGCTCACTATCAACTCGGTAATCGTCAAGT-TTTATTTATT
TATTTTTTAACTGTTTAGCTGTGTTCTAAATACAGCATATGTTGCCATGTTGGTATGCTGACTCTGCTTCTCGATTAAAT
TTCAGGCCGGCGACTATCTGCGCTTGTTGAGCCCCAAAAGAGGCATCTCGATGAAATTCGATTGCCTAGTTGAAGTGGAT
ATTAGAACAAAGGCATTGTCGGGTGATAGTACAGATGAT-AAAATCTTGTTGATGGATGCTTCGACCTAATCGAGGGCCG
GTCTAGTTTCGACGTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGTGCTCTTGTTTTTAATCTTATCATATTTCGAG
AC--------AGTGTCGAGGCGACCATACATATGAACTTTTTGGAAGTGCCTGGAGATGGGTTTGATATAAAGATGTGTG
GGTATACTGCCATCTGGAAGAACTTGTATGCCTTCATA----GACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTC
AACTGGGAGTTTTTCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACATTGTTTATTGATTTTATGGAGGGGAGTA
TGCCAATTTCATTTAAAGCGGATATTCATGGCAGCGAAGAAAAAGAATATTATTTCTGTAATAGTGCTGTGGTGTCTGTG
AAAGTGTCTTGGTCGACAGTCCTCTACTAA--------------------------------------------------
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>chr1B_1_TraesCS1B01G030700
CTAGTTGCAGCTTTACTAATAGAAAACTTATATGGGAAAAGTCTATTTGATAGGGTGACGTGAGAAATAAAATGAAGGGG
GTATCCACTACTGGTGGTAATGGTGGATAATTTTTCTTCAAGCTCCACAAGAGCTCTTTGAACTAGAGTTTTTGAAGCAC
CCCGTAATAGCTTCACAAATAGGGAGTTGTACCAAGTTTTAGATTATTGTTTCTTTTCTGAAGTGAGACATCATGGAGCT
ACCTCATTTGGCTTGCATCTCTTTCAGAGCGGAGCTGGATTTTAGGAAAAAAGAGCAGTTTCAAACAGGCCCTTAGCAGG
GT------GTTCCGAGTCGATC-------------------------------CCTCCAACAGTAGGGCGGCCCAAAA-G
GGATTCTCAACAAAAAAAGGTGGCCCAAAAGGGACACGGGCTTGACCTTACCCCCAACGAATTCTC--------------
---------------TCTCCCAGGAACCAAGAAAGAAAACCCTAACCCTGGCGTACGTATCGCCGCCGCCGCCCCAA---
AATTCGCCAGCCCCGAATCCGTCTACATGACCTAATTTCTACACCCCCAAATCCAATTCGGACTCGATGCTCTAACAGTT
TATTTACCG--AGCCGGCTCGATCGATCTCTTCATACGAATATTTCGTTTTTTTGCAGATCCGTAGATTTGCAAATCTAA
GTGATTCCTCCTGCAGAGGGCAAGTTCGATCTACGAATTTGGTGTTTCAGGACTCATGGCTCTCTCTCACGAGGAGGTGG
AGCAGGAGGAGGAGGAGGAGGAGGAGGAAGACGATGATCTTGAGGACGGCCCCCTAAGCCCCGAGGATGGTAACATTCCC
CAATTATACTCTCAAATATTTTTCCCTTGTTGGTTACTTATTTCCTTGGATGGATGCGGTTCCAAGCTACTACATGTGCG
ACTGGTTATAATTTTTATTATTAGTTGATGTGTTCTTTTCCTT-GTATCGTCATCAGTGCTGCGATTTGTCGAGAGAGTT
GGTTCCGTGGAACTTGCCAAGAGGAAATTGTTGATGAAAGACACTATGGGGGTTCCGCCCGAACCCTATGACTGGCCCAA
CATCTGCCCGCTCCCCGGGTCGTCCAGAGATCGGAGGTCTGCGTGTGATCTTTACTGGCACCAGGCCTACCAGATGAATC
AAGTCTCCGAGAGTAAGCAGCTCAACTGCAAGCTCTCTCTCCGTGTTACAATACAATACACATTTCTGTCTAGATTGTTT
TTGCTGCATCATTCTTGTGTTTAATATGTTGCTCCCTGCCTGCCTTTGAATGAATAGCTTGCCTGCCTCCTATGCGGTAT
ACTCGCTGTTGCAATGAAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCGCGCCCTATACTCCAACTCTTTTCTAC
CACGGTGCATACCTTTCTGGAAGATTGCACCAGACCAGTCGAGGTATACGGTTATATTGCGGTCCGAGATGACGAGGATT
ATCGCCGCAATTATCTTTTCAACCGATCCCGAGATGACCCGCTCACTATCAACTCGGTAATCGTCAAGT-TTTATTTATT
TATTTTTTAACTGTTTAGCTGTGTTCTAAATACAGCATATGTTGCCATGTTGGTATGCTGACTCTGCTTCTCGATTAAAT
TTCAGGCCGGCGACTATCTGCGCTTGTTGAGCCCCAAAAGAGGCATCTCGATGAAATTCGATTGCCTAGTTGAAGTGGAT
ATTAGAACAAAGGCATTGTCGGGTGATAGTACAGATGAT-AAAATCTTGTTGATGGATGCTTCGACCTAATCGAGGGCCG
GTCTAGTTTCGACGTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGTGCTCTTGTTTTTAATCTTATCATATTTCGAG
AC--------AGTGTCGAGGCGACCATACATATGAACTTTTTGGAAGTGCCTGGAGATGGGTTTGATATAAAGATGTGTG
GGTATACTGCCATCTGGAAGAACTTGTATGCCTTCATA----GACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTC
AACTGGGAGTTTTTCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACATTGTTTATTGATTTTATGGAGGGGAGTA
TGCCAATTTCATTTAAAGCGGATATTCATGGCAGCGAAGAAAAAGAATATTATTTCTGTAATAGTGCTGTGGTGTCTGTG
AAAGTGTCTTGGTCGACAGTCCTCTACTAAGGAATATATATATATATATGTTGGAGGTTAACTCAATAGTATTTGCAGAG
GAAGAGAACAAAATGTGTGCTTATTGGTGTACTATTTTAGCATGTCTTATGAACTAGATGTTAAATCAAGTTTTCATAGC
TCAAAAATACCAGAAGACTTGCATCATTCTAAATTTTAAATGGAATTCTTCCAAAAGCTA-ATTTGCAAGTCATTTATTT
GAGTTCTACGTTTTCTTTTGGGTTTTCTTCAACTTCTTATGCAAGTAGTAACCAGTTTTGTTTCCCACTAAGAACTGGAG
GCTCGAAACCACTTCTTGGTATGTTTAGTCAATGAAAAATATAATTCAAGTTTTTTCTCTATCCTTTTACCCTGAAAATA
TTTCAAAGCTGCATTGAAATTTCATCCGCTAAAACCTCTACAAGACTAGTTTTCATTTTAATGTCATTGCTTGAATAGTA
CCATTGAAAAACAGAGGACATCACGCTC----------------TTAATACCACAAACCAGAGGACAT------------
-CCATGCTTGTCTGCTGGTTCATTTGGAATGGGAGAAATGCTAGAGTTTTCAGGAAGAAATCGACG-CCGCCATTCTACC
TACTCGAGCTTATCCAAGACGAGGCTAATAAACTCTGGACCACCGTGGGGGCTAGGCACTTGAGCATCATCATGCTGCGA
GAGTAATCCGCTTGTTGTTTGTTTGTTTGTTTTCTCCTCAT----GCTATTCTGTGGAGACACTGTTATGTACTCCCTTC
GTCCCGTAATCTAAGATGTTTTTTTCATTAGTGTAGTGTCAAAAAACGTCTTACATTATGGGAAGTCTTTTGCCTCAGTT
TAGAAAAACATTCTATACTATCAGTATGAAACTATGAACCCACATTACGTCTCACAAGTCTTAGATATGATGCTGAGTTT
TGTCAAGTTTCATGTATGGTATCCGATGAAGCTTATTTAAGTTTGAAAGTCTTCCTCGTCAACACTTTTCTCTAATCGTA
GCTCTAGCCTTAGGCGCTCCCCACC
>chr1A_156
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---------------------------------------------------------------------------AGCAC
CCCCTAATAGCTTCACAAATAGGGAGCTCCACCTAGTTTTAAATTATTATTTCTTTTCTGAAGTGAGACATCATGGAGCT
ACCTCGTTTGGCTTGCATCTTTTTCAGAGCGGAGCTAAATTTTAGG-AAAAAGAGCAGTTTCAAACAGGCCCTTAGCAGG
GTAGGCCGGTTCCAAGTCGATTCAAACAAGCAGGCCCAATATCTTGTGAGGTACCTCCAACAGCAGGGTGGCCCAAAAGG
GGATTCTGAAAAAAAAAAGGTGGCCCAAAAGGAACACGGGCTTGACCTTACCCCCAACGAATTCTCCCAGGATTCCCTCA
AAAAAAAAAACGAATTCTCCCAGGAACAAAGAAAGAAAACCCTAACCCTCGCGTACGTATCGCCGCCGCCGCCGCCCCCG
AATTCGCCAGCCCCGAATCCGTCTACATGACCTAATTACTACACCCCCAAATCCAATTCGGACTCGATGCTCTTACAATT
TATATTTATTCAGCCGGCTCGATCGATCTCTTCATACAAATATTTCGTTTT--TGCAGATCCATAGATTTGCAAATCTAA
GTGATTCCTCCTGCAGAGCGCAAGTTCGATCTACGAATTCGGAGTTTCAGGACTTATGGCTCTCTCTCACGAGGAGGTGG
AGCAGGAGGAGGAGG---------------ACGATGATCTTGACGACGGCCCCCTAAGCCCCGAGGATGGTAACATTCGC
TAATTATACTCCCAAATGATTTTCCCTTGTTGGTTACTTATTTCTATGGATGGATGCTGTTCTAAGCTAC---ATCTGCA
CCTGGTTGTAATTTTC---ATTAGTTGATGTCTTTTTTTCCTTTGTATCATCATCAGTGCTGCGGTTTGTTGAGAGTGTT
GGTTCCGTGGAGCCTGCCAAGAGGAAACTGTTGATGAAAGACACTATGGGGGTTCCGCCCGAACCCTATGACTGGCCCAA
CATCTGCCCGCTCCCGGGGTCGTCTAGAGATCGGAGGCTTGCGTGTGATCTTTACTGGCACCAGGCCTACCAGATGAATC
AAGTCTCTGAGAGTAAGCAGCTCAACTGCAAGCTCTCTCCGC--GTTACAATACAATACACATTTCTGTCTAGATTACTT
TTGCTGCATCAGTATTGTGTTAAATATGTTGCTCCCTGCCTGCCTTTGAATCAATAGCTTGCCTGCCTCCTATGCGGTAT
ACTCGCTGTTGCAACGAAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCGCGCCCTATACTCCAACTCTTCTCTAC
CATGGTGCATACCTTTCTGGAAGATTGCACCGGACCGGTCGAGGTATACGGTTATATTGCGGTCCGTGACGACGAGGATT
ATCGCCGCAATTATCTTTTCAACCGATCCCGAGATGACCCGCTCACTATCAATTCGGTAATCGCCAAGTCTTTATTTATA
-----TTTAGTTGCTTAGCAGTGTTCTAAATACAGCATATTTTGCCATGTTGGTATGCTGACTCTGCTACTCGATTAAAT
TTCAGGCCGGCGACTATCTGCGCTTGTTGAGCCCCAAAAGAGGCATCTCGATGAAATTCGATTGCCTAGTTGAAGTGGAT
ATTAGAACAAAGGCATCATCGGGTGATAGTAGAGGTGATAAAAATCTTGTTGACGGATGCTTCGACCTAATCGAGGGCCG
GTCTAGTTTCGACGTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGTGCTCTTGTTTTTAATTTTATCATATTTCGAG
AC--------AGTGTCGAGGCGACCATACATATGAACTTTTTGGAAGTGCCTGGAGATGGGTTTGATATAAAGATGTGTG
GGTACACTGCCATCTGGAAGAACTTGTATGCCTTCATA----GACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTC
AACTGGGAGCTTTTCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACACTGTTTATTGATTTTATGGAGGGGAGTA
TGCCAATTTCATTTAAAGCGGATATTCATGGCAGTGAAGAAAAAGAATATTATTTCTGTAATAGTGCTTTGGTGTCTGTG
AAAGTGTCTTGGTCGACAGTCCTCTACTAAGGAATATATATGTATATATGTTGGAGGAATTA--AATAATATTTGCAGAG
GAAGAGAACAAAACGTGTGCTTATTGGTGTACTATTTTAGCATGTCTTATGAACTAGATGTTAAATCAAGTTTTCATGGC
TCAAAAATACCAGAAGACTTGCATCATTCTAAATTTTAAATGGAATTCTTCCGAAAGCTAAATTTGCAAGTCATTTATTT
CAGTTCTATGTTTTCTTTTGGTTTTTCTTCAGCTAATTATGCAAGTAGTAACCAGTTTTGTTTCCCACTAAGAACTGGAG
GCACGAAACCACTTCTTGATATGTTTAGTCAATGAAAATTATAATGTAAGTTTTTTCTCTATCCTTCTACCCTGAAAATA
TTTCAAAGCTGCATTAAAATTTCATCCGCTAAAACCTCCACAAGACTAGTTTTCATTTTAATGTCATTGCTTGAATAGTA
CCATTG-AAAACAGAGGACATCACGCTCCCATCATGTATGGTTCTTAATACGACAAAACCGGAAGTCCATGACTTCCCTC
ACCATGCTTGTCTGCTGGTTCATTTGGAACGAGAGAAATGCTAGAGTTTTCAGGAAGAAAATCGACCCCGCCATTCTACC
TACTTGAGCTTATCCAAGACGAGGCTAAACTCT---------------GGGCTAGGCACTT-AGCATCATCATGCTGCGA
GAGTAATCCGCTTGTTGTTTGTTTGTTTGTTTTCTCCTCTGGCAGGCTATGTTGTGGAGCCACTGTTATGTA--------
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>chr5A_1596
CTCAT---------------------------------------------------------------------------
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---------------------------------------------------------------------------TAAAT
TTCAGGCTAGCGACTATCTACGATTGTTGAGCCCCAAAAAAGGCATGCCGATGAAATTCAATTGCCTAGCTGAAGTGGAT
ATTAGAACAAAGGCATTGTCAGGTGATAGAGA---TGATAAAACACTTGTTGATGGATGTTTCGACCTAATCGAGGGCCG
GTCTACTTTCAACATGCTTTCTAGAATAAAAATGGAAGGTGAACATGGGGCCCTTGTTTTTAATCTTATCATATTGCGAG
TTTGCAACAAAGTGTAGAGGCGACCATACATATGAACTTTTTGGAAGTGTCTGGAGATGAGTTTGATATAAAGATGTG--
---------CCATTTGGAAGAGCTTGTATGCATTCATATATAGACGATGAACAATGCGAGTGCAATAGGTTCGTCTCTTC
AGCTGGGAAATATTCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACACTGTTATTTAATTTTATGGAGTGGAGTA
TGCCAATTTTCATTCAAATCAGCACTT-----AGTGAAGAAAAGGAATATTACTTCGGTAATAGTGCTATGG--------
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>SNPs
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---S----------------------S-SS---S-------S------S-------------------------------
-----S--------------S---------------SS--------S---------------------------------
-------------S-------S-----------------------------------------S----S-----------
-------S--S---------------------S-----------------------------------------------
---------------------------S---------------------S-----------------------S-SS---
-------------------------------------S-----------------------------------S---S--
---S-SSSS----------------------------S-------------SS---------S-----------------
------------------S--------------------S--S-----------S-------------------------
---------------SSSSSSSSSSSSSSS-------------S----------------------------------S-
S----------S-----SS-------------------------SS-----------S----S-------SSS--S---S
S------S-------SSSS------------S--S--------------S--------------S-----S-----S---
-----------S-S-------------S----------------------------------------------------
---------------S--------S------------SS-----------------------------------------
-------S-------------------------------SS-SS--------------------------------SS--
-----------S-S-------S-----------------------------S----------------------------
--------------S-----------------------------------------------------------S-----
--S----------------------------S----S-----------------------------S--S----------
----------------------------------------------------S----------S---------------S
SSSSS----SS--S-----S--------------------S---------------------------S-----------
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-------------------------------S--S---------------------------------------------
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----S---------------------------------------------------------------------------
---------S------------------------------------------S---------------------------
----------------------------------S---------------------------------S-----------
-----------------------------------------S---------------SSSSSSS----S-----------
-------------S---------------------------------------------------------------S--
----------------------------------------------------S---------------------------
S-------S------------S---------S--SS--------------------------------------------
--S---------------S-------------------S------SS-------------------S-------------
---------------S----------------------S-----------------------------------------
------S--------------------------------------------S-----S-S-SSSSSSS------------
-----------------------------S-S----------------------------SSSSSS--------------
----S-----------------------SSSSSSSSSSSSSSSSSSSS-------------S------------------
---------------------------------------SS---------SS-------S------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_830
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----------GGAGGAGGAGGAGGAGGAAG--------------------------------------------------
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>reverse_2788
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-------------------------------------------------------------------TCCATGCTTGTCT
GCTGGTT-------------------------------------------------------------------------
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