>input_sequence_58190
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------------------------------------ATGTACAGAAAGGA---------TAATCGTCCGGTCGCTTGTGT
TTACTCCTCGGAGGCTGGTGTATGGGGCAATATCATCTTCACATATGCTCGATGTGAGCTTGCTGATGCTAATCCCGGAG
TTCTTGTTGGTAATGTCCTTTACTGGTCGTCTAAGTCTATTGATGCCGGCCAACGTTTGCG---GGATTTGGATAGGCGC
ACAAACGACATAATTGAGTTTGATTTGGATACACATAGCCTAGCTGTGATCAAGGGGCCTCATTGTCTTAGTAACTCACT
CAGACATCAGATCTTCAAGGCAGAGGATGGTTCTGTTGGTCTCACCATGTTGTTTTATGGTAGATTCACAATGTGGCGGA
GGAAGATTGATTGTCATGGTGTTGCCACATGGTTAAAGCACAAGAGCATTCAAATGCATCCTATTCTTGGGCTCTCTCAT
CACCTTGTGAT---ATCGCCGAGATGGATAGATGTACTGGGGTATGATGAGGATAATGGTGTAATATTTTTACATGTGGA
CGCCAGTGTCTACATGGTTCAACTGATGTCGATGCAATCCAAGAAACTTTATCGAAGCT---------ATTGT-------
--CCCA---------ATAATAGATGTCACCCTTTCACAAGTTTCTATGCACCAGGTGATTGCTCATCCTTAGTCTGTGTA
TTGTGGTAATAACCAAATCCAATAATATCACAAAA----AAGGTTGATGGAATAACTTCTGAAATAGCAGTTTTTTGGTC
ACTTGTTGAAGATCCCTGTTGCAAGTGACGAGTACACTTGTACTACTACACAGACAATTTTTTTTTTTGAATTTCTTGTC
TCTAACAAGCTAGTGTAGAATTTGTTAGTTTGGGTGTGCTATTATC-------------------------TTTGTCACC
TGGATATGTGGGATAAATTCTAGGCAGTCTCTTTTTTTTTCTTACAAGCGAAAACTTTCTTTACGAGGTAGCTAAATATT
ACTGTTT-CTGGATTGCTCTTTGCATTTAAAAATTATGTGGCTTTGTTTATCTATTGTTAGCATCAAAAGTGGGTTATAG
AACATTCATAAAAACCTAAGTAGTTATTTTGTCGGTTCATCTATGTAACTTGACTCACTGTTGCCTCTTATGTCTTTTCC
TTGTGGCTTTTATTAATCGCTTGACTTCTTATGCTTCTGGTCATAGCCATTCCTGGTGTATGCGATGGAGCTGAAATGTT
GCACGATACGTAG-------------------------------------------------------------------
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----------------------------------------------------------------------
>chr3A_1_TraesCS3A01G064100
GGGGCAACAGGCAGCAGCAGCCTCCACCAGGCCACCACTCCCCCAGTCCGTTCTCGCCGGGAGTAGCAGTGCCTCGCCGG
CGCCTCTGTCCCCAAATCCAAATGGCGGACGACGCCGTCGGAGCGAACTGCCCTCGCCGCAGCACGCGCCTCCACCCCCG
GATCCACGCGAATGAGGAGGAAGCCGAAATTGCAACCCGCCGTTACAGCCCGCGCCTCCATCCCCAAACCCTCGCGAGCA
AGGAGGTCTCCGGAGTGACCCG----------------------------------------------------------
-----------CCGCCACCGCCGCGGCACGCCCCTCCACCCTCAGATCCACGGTAATGAGGAGGGCGCCGGAGTGACCCG
ACGTTGCAGCCCGCGATTCCATCCCCAAATCCACGCGAGTGGGGATGGGGAGGCCGCCCGAGTGACCCGCT---GCCGCC
GCGGAACCTCGCCGGAGGCGGCTGACTCCCTGCCGGCCAGCGACGATCTCCTCCGGGAGATCCTCCTCCGCCTCCCGCCG
CAGCCGTCCTCCCTCCCACGCGCATCCGCCGCCTGCAAGCGCTGGCTGCGCGTCGCCGCCGACCC-CGGTTCCTCCGCGG
CTTCTCTGTCCGCCACCGCAAGCCGCCCCTCCTCGGCGTCTTCGAGCCCCTCGACTGGGAGGTCGACTCGCGCGGCCTCC
TTAATCGTCGCTCCTTGAAGCGCCGTGACAAGTGGATCGCGTTCACGCCCATCCTCGACCCTCCCGACCGGATCCCTCCT
CAGCGCTTCGATCTGCGACATCACGGCGTCGAAACCGGCATCCGCTCCAGGGCCCAACTGCTCGGCTGCCGCCACGGCCG
CCTTCTCATCATGGACCATGTGCCCATGGAGTGAGTTGTCTTCGCCCCCATCACGGGCGAGCAGCGCCGTTTGGCCGTTC
CCACGGAGTTCAAGAGGGACTTT---CTCCATGCGGCGGTGCTCTGTGCTGCCGACGAGCTTGGCCATGTGCACGGCAGC
TGCCATTTGAGCCCATTCAAGGTGGTCTTGGTGTCCATGTACAGAAAGGA---------TAATCGTCCGGTCGCTTGTGT
TTACTCCTCGGAGGCTGGTGTATGGGGCAATATCATCTTCACATATGCTCGATGTGAGCTTGCTGATGCTAATCCCGGAG
TTCTTGTTGGTAATGTCCTTTACTGGTCGTCTAAGTCTATTGATGCCGGCCAACGTTTGCG---GGATTTGGATAGGCGC
ACAAACGACATAATTGAGTTTGATTTGGATACACATAGCCTAGCTGTGATCAAGGGGCCTCATTGTCTTAGTAACTCACT
CAGACATCAGATCTTCAAGGCAGAGGATGGTTCTGTTGGTCTCACCATGTTGTTTTATGGTAGATTCACAATGTGGCGGA
GGAAGATTGATTGTCATGGTGTTGCCACATGGTTAAAGCACAAGAGCATTCAAATGCATCCTATTCTTGGGCTCTCTCAT
CACCTTGTGAT---ATCGCCGAGATGGATAGATGTACTGGGGTATGATGAGGATAATGGTGTAATATTTTTACATGTGGA
CGCCAGTGTCTACATGGTTCAACTGATGTCGATGCAATCCAAGAAACTTTATCGAAGCT---------ATTGT-------
--CCCA---------ATAATAGATGTCACCCTTTCACAAGTTTCTATGCACCAGGTGATTGCTCATCCTTAGTCTGTGTA
TTGTGGTAATAACCAAATCCAATAATATCACAAAA----AAGGTTGATGGAATAACTTCTGAAATAGCAGTTTTTTGGTC
ACTTGTTGAAGATCCCTGTTGCAAGTGACGAGTACACTTGTACTACTACACAGACAATTTTTTTTTTTGAATTTCTTGTC
TCTAACAAGCTAGTGTAGAATTTGTTAGTTTGGGTGTGCTATTATC-------------------------TTTGTCACC
TGGATATGTGGGATAAATTCTAGGCAGTCTCTTTTTTTTTCTTACAAGCGAAAACTTTCTTTACGAGGTAGCTAAATATT
ACTGTTT-CTGGATTGCTCTTTGCATTTAAAAATTATGTGGCTTTGTTTATCTATTGTTAGCATCAAAAGTGGGTTATAG
AACATTCATAAAAACCTAAGTAGTTATTTTGTCGGTTCATCTATGTAACTTGACTCACTGTTGCCTCTTATGTCTTTTCC
TTGTGGCTTTTATTAATCGCTTGACTTCTTATGCTTCTGGTCATAGCCATTCCTGGTGTATGCGATGGAGCTGAAATGTT
GCACGATACGTAGGATGACTGTCTGGTTGCATGTCATAATGTGCTGGAATGGTTCAACAGGTAACAACATCTTCGAGATA
TAGTTTGTGAGGTCTAGTCGTCTAGATTGTTT------TTTTATGGAAACTATTGCTCATCCGGCTGCAGGGTTTCATGG
ATGTTAATGATGGGTACAACAATTAAAACAATTTTAGGTTGTAACTTATAAATGACGTGCAGATGTTTCACACGGTGTTG
TGTTGCTGTTGATATTACCTGGTCAGGCTGGGTGTTTGGTTAGACCGAACCGATCGGTTCGGTGCTTCGGTT-ATCTTGA
TATTTGGTTTCCTATATTTACTAACTGTTTGGTCTCATGGAAAATTGATAAGCGATATTTCAGTGCACCGATAGTTTGGT
TCGGTCCTCAGAATAACCGAAGAAAACTGAGAATAGGTTAGGGAGCAAGAAATCCGTAGTCAAAAGTCAAAAGGGACAAC
AAACAGGCCAACATAGTGGAGAAATTAGTAGGATGAAGGAATTAAATGGCGCTGGATATTCTCGCATGCGGGCCGCTGGC
TGTGAAGGAGTGATGGTCA-CTAGCTCGCTGTTGCGTGGGGGCCATGTACGTTGTCGGCCGCCGCTGCGTGGTAGCCATG
GGTGCTGCCTCTGCCGCCGCGCGGGAGCCAAGTGCGTCGCCGGACCCTGCCGCGCGGTAACATTGGCGCTGCCGCCGCCA
CCACTGAGTTGGAGCCATGGCTAGCCAGCCGCCACTGGGATTGCATGAGGTGGACAAATGGGGGCGGTGGTGATACGTGA
TATGCGTGCGTGAAGCAAGAACGTTATGGATAAGTTGCGGCCTGTGGGACTGCTCCTGTTGGCTAGAAGCTTCGTATTGA
TGGGCTATTGGGCTTAGTTATGATGGGCCTTATATAATATTTCGGTCAATTCGGGAATTCGGTCAACCAGATCCAATGAC
CGAA---------CTTATTTCGGTTTTAGATTTGTGCGAACCGAACATACAACCGAAGTTTTGGTCCTCG
>chr3D_73
------------------------------------------------------------------------CTCGCCGG
CGCCTCTGTCCCCAAATCCAAATGGCGGACGAGGCCGCCGGAGCGAACTGCCCTCGCCGCAGCACGCGCCTCCTCCCCCG
GATCCACGCGAATGAGGAGGAGGCCGAAATTGCAACCCGCCGTTGCAGCCCGCGCCTCCATCCCCAAACCCTCGCGAGCA
AGGAGGTCTCCGGAGTGACCCG----------------------------------------------------------
-----------CCGCA----------------------------------------------------------------
-----GCAGCCCGCGATTCCATCCCCAAATCCACGCGAGTGGGGATGGGGAGGCCGCCCGAGTGACCCGCCGCCGCCGCC
GCGGAACCTCGCCGGAGGCGGCTGACTCCCTGCCGGCCAGCGACGATCTACTCCGGGAGATCCTCCTCCGCCTCCCGCCG
CAGCCGTCCTCCCTCCCACGCGCCGCCGCCGCCTGCAAGCGCTGGCTGCGCGTCGCCGCCGACCCCCGGTTCCTCCGCGG
CTTCTCTGCCCATCACGGCAAGCCGCCACTCCTCGGCGTCTTCGAGCCCCTCGACTGGGAGATCGACTCGCGCGGCCTCC
TTAATCGTCGCTCCTTCAAGCGCCGTGACAAGTGGATCGCGTTCACGCCCATCCTCGACCCTCCCGACCGGATCCCTCCT
CAGCGCTTCGACCTGCGACGTCACGGCGTCGAAACCGGCATCCGCTCCAGGGCCCAGCTGCTCGGGTGCCGCCACGGCCG
CCTTCTCATCATGGACCATGTGCCCATGGAGTTAGTTGTCTACGCCCCCATCACCGGCGAGCAGCGCCGTTTGGCCGTTC
CCTCCAAGTTTAAGATGGACTTT---CTCAACGCGGCGGTGCTCTGTGCTGACGACGAGCTTGGCCACGTGCACGGCAGC
TGCCATTGGAGCCCATTCAAGGTAGTCTTAGTGTCCATGTACAGAAAGGA---------TAATCGACCGGTTGCTTGTGT
TTACTCTTCGGAGGCTGGTGTATGGGGCAATCTCATATCTACAGACGCTCGATGGGGGCTTGTTGATGCTAATCCCGGGA
TTCTTGTTGGTAATGTCCTTTACTGGTCGTCGAAGTCTGTGTGTGACGGCGAAGGTTTGTG---CTATTTGGATAGGCTC
ACAAATGATATAATTGAGTTTGATTTGGATACACATAGCCTAGCTGTGATCAAGGGGCCTCCCTGTCTCAGTAACTCACT
TAGACATCAGATCGTCAAGGCAGACGATGGTTCTGTTGGTCTCACCATAGTCTTTTATGGTAGATTCAAAATGTGGCAGA
GGAATATTGATTGTCATGGTGTTGCCACATGGTTAAATCACAAGAGCATTCAAATGCATCATATTCTTGGGCTCTCTCAT
CACCTTGAGAT---ATCGCCGGGATGGATAGATGTACTGGGGTATGATGAGGATAATGGTGTAATAGTTTTACATGTGGA
CGCCAGTGTCTACATGGTTCAACTGATGTCGATGCAATCCAAGAAACTTTATCGAAGCT---------ATTGT-------
--CCCA---------ATAATAGAGGTCACCCTTTCACAAGTTTCTATGCACCAGGTGATTGCTCATCCTTAGTCTTTGTG
GTGTGGTAGTAACCAACTCCAGTAATATTCTATACATATATAGTTGATGGAATACCTTCTGAAATAACAGGTTTTTGGTC
ACTTGTTGAAGACCCATGCTTCAAATCACTAGTACACTTGTAGTGCACA---------------TTTTTAATTTCTTGTC
TCTAATAGGTTACATTTATTTAAAGCTGAACACCAAAATCACTGCTGTTGGCTGTTTGGGCATGTATTATTTTTGTCAGC
TTGATATGTGGGATAAATTCTAGGCAGTC----TTTTTTTCTTACAAGCGAAAACTTTCATTATGAGGTAGCTAAATATT
ACTGTTTTCTGGATTGCTCTTCGCATTTAAAAATTATGTGGCTTTGTTTATCTATTGTTAGCATCAAAAGTGGGTTATAG
AACATTCATAAAAACCTAAGTAGTTATTTTGTCGGTTCATCTATGTAACCTGACTCACTGTTGCCTCTTATGTCTTTTCC
TTGTAGCTTTTATTAATCGCTTGACTTCTTATGCTTCTGGTCACAGCCATTCCTGCTGGATGCGATGGAGCTGAAATGTT
GCACGATACGTAGGATGACTGTCTGGTTGCATGTCATAATGTGCTCGAATGGTTCAACAGGTAACAACATCTTCGAGATA
TAGTTTGTGAGGTCTAGTCGTCTAGATTGTTTAATTTTTTTTATGGAAACTATTGCTCATCCGGCTGTAGGGTTTCATGG
ATGTTAATGATGGGTACAGCAATTAAAACAATTTTAGGTTGTAACTTATAAATGATGTGCAGATGTTTCACATGGTGTTG
TGTTGCTGTTGATATTACCTGGTCAGGCTGGGTGTTTGGTTAGACTGAACCGATCGGTTCGGTGCTTCGGTTTATCTTGA
TATTTGGTTTCCTATATTTACTAACTGTTTGGTCTCATGGAAAATTGATAAGCGAGATTTCGGTGCACCGATAGTTTGGT
TCGGTCCTCAGAATAACCGAAGAAAACTGAGAATAGATTAGGGAGCAAGAAATCCGTAGTCAAAAGTCAAAAGGGACAAC
AAACAGGCCAACATAGTGGAGAAATTAGTAGGATGAAGGAATTAAATGGCGCTGGATATTCTCGCATGAGGGCCGCCGGC
TGTGAAGGAGTGATGGTCGCCTAGCTCGCTGTTGCGTAGGGGCCATGTACGTTGTCGGCCGCCGCTGTGTGGTAGCCATG
GGCACTGCCTCTGCCGCCGCGCGGGAGCCAAGTGCGTCGTCGGACCCCGCCGCGCGGGAACATTGGTGCTGCCGCCGCCA
CCACTGAGTTGGAGCCATGGCTAGCCAGCCACCACTGGGATTGCATGAGGTGGATAAATGGGGGCGGTGGTGATACGTGA
TATGCATGCGTGAAGCAAGAACGTTATGGATAAGTTGCGGCCTGTGGGACTGCTCCTGTTGTCTAGAAGCTTCGTATTGA
TGGTCTATTGGGCTTAGTTATGATGGGCCTTATATAATATTTCGGTCAATTCGGGAATTCGGTCAACCAGATCCAATGAC
CGAACTCACCGAACTTATTTCGGTTTTAGATTTGTGCGAACCGAACATACAACCAAAGTTTCGGTCCTCG
>chr3B_73
------------------------------------------------------------------------CTCGCCGG
CGCCTCTGTCCCCAAATCCAAATGGCGGACGAGGCCGCCGGAGCGAACTGCCCTCGCCGCAGCGCGCGCCTCCGCCCCCA
GATTCACGCGAATGAGGAGGAAGCCGAAATTGCAACACGCCGTTGCAGCCCGCGCCTCCATCCCCAAACCCTCGCGAGCA
AGGAGGTCTCCGGAGTGACCCGCCGCCGCCGCCGCGGCACGCGCCTCCGTCCCCAGATCCACGGTAATGAGGAGGGCGCC
GGGGTGACCCGCCGCA----------------------------------------------------------------
-----GCAGCCCGCGATTCCATCCCCAAATCCACGCGAGTGGGGATGGGGAGGCCGCGCGTGTGACCCGCCGCCGCCGCC
GCGGAACCTCGCCGGAGGCGGCTGAGTCCCTGCCGGCCAGCGACGATCTCCTCCGGGAGATCCTCCTCCGCCTCCCGCCG
CAGCCGTCCTCCCTCCCACGCGCCGCCGCCGCCTGCAAGCGCTGGCTGCGCGTCGCCGCCGACCCCCGGTTCCTCCGCGG
CTTCTCTGCCCGCCACCGCAAGCCGCCCCTCCTCGGCGTCTTCGAGCCCCTCGACTGGGAGATCGACTCGTGTGGTCGCC
TTAATCGTCGCTCCTTCAAGCGCCGCGACAAGTGGATTGAGTTCAGGCCCATCCTCGACCCTCCCAACCGGATCCCTCCT
CAGCGCTTCGACCTGCGACGTCACGGCGTCGAAACCGGCATCCGCTCCAGGGCCCAGCTGCTCGGGTGCCGCCACGGCCG
CCTTCTCATCATGGACGATGTGCACGCAGACTTTGTTGTCTACGCCCCCATCACGGGCGAGCAGCGCCGTTTGGCCGTTC
CCACGGAGTTCAAGAGGGACTTT---GTCCATGCGGCGGTGCTCTGTGCTGCCGGCGAGCTTGGCCACGTGCACGGCAGC
TGCCATTGGAGCCCATTCAAGGTGGTCTTGGTGTCCATGTACAGAAAGGA---------TAATCGGCCGGTTGCTTGTGT
TTACTCCTCGGAGGCTGGTGTGTGGGGCAATCTTATTTCCACAGACGCTCGATGCGGGCTTGTTGATGCTAATCCCGGGA
TTCTTGTTGGTAATGTCCTTTACTGGTCGTCTAAGTCTGTGTGTGACGGTGAAGGTTTGTG---GGGTTTAGATAGGCTC
ACAAATGATATAATTGAGTTTGATTTGGATACACATAGCCTAGCTGTGATCAAGGGGCCTCCCTGTCTCAATAACTCACT
CAGACATCAGATCATCAAGGCAGACGATGGTTCTGTTGGTCTCACCGTGGTGTTTTATGGTAGATTTGAAATGTGGCAGA
GGAAGATTGATCGTCATGGTGTTGCCACATGGTTAAATCACAAGAGCATTCAAATGCATCTTGTTCTTGGGCTCTCTCAT
CAGCTTGAGAG---ATTGACGAGATGGATACAAATTATGGGGTATGATGAGGATAATGGTGTAATATTTTTACATGTGGA
TGCCAGTGTCTACATGGTTCAACTGATGTCGATGCAATCCAAGAAACTTTATCGAAGCT---------ATACT-------
--CCCA---------ATTATAGATGTCACCCTTTCACAAGTTTCTATGCGCCAGGTGATTGCTCATCCTTAGTCTTTGTG
GTGTGGTAGTAACCAACTCCAATAATATCACAAAA----ATGGTTGATGGAATAACTTCTGAAATAGCAGTTTTTTGGT-
ACTTGTTGAAGATCCCTGCTGCAAGTGACTAGTACACTTGTACTACTACACGCACAATTTTTTTTTT-GATTTTTTTGTC
TCTAATAAGCTATTGTAGATTTTTTTAGTTTGGGTGTGCTATTACC-------------------------TTTGTCACC
TGGATATGTGGGATAAATTCTAGGCAGTCT---TTTTTTTCTTACAAGCGAAAACTTTCTTTATGAGGTAGCTAAATATT
ACTGTTTTCAGGAACGGTCTGCGCATTTAAAAATTATGTGGCTTTGTTTAT-TATTGTAAGCATCAAAAGTGGGTTATAG
TACATTGATAAAAAGCTGAGTAGTTATTTTGTCGGTTCATCTATGTAACT-GACTCAGTGCCTTCTCTTATGC-----CC
TTGTAGCTTTTATTAATCGTCTGACTTCTTATGCGTCTGGTCACAGCCATTCCTGGTGGATGCAATGGAGCTGAGATGTT
GCACGATATGTAGGATGACTGTCTGGTTGCATGTGATAATGTGCTCGAATGGTTCAACAGGTAACAAGATCTTCGAGATA
TAGTTTGTGAGGTCTAGTCGTCTATATTGTTT------------------------------------------------
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>chr3D_681
--------------------------------------------------------------------------------
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---------------------------------GGGTCGCATTCAGGGCCATCCTGGGCCGTCCCGACGACATCCCTCCT
CGGCGCTTTGACCTGCGGCGTCACCGCGTCGGAACTTACACCCGCTCAAGTACCCAACTGCTCGAGTGCCGCCATGGCCG
CGTCCTCCTCATGGACTACGAGCGCACAGAACTCGTTGTTTGCGCCCCTATGGTTGGCGAGCAGCGCCCAGTCCCAGTTC
CGCCGGACTTCATGAGGGTCTTA---------------GTGATCTGCGCTGCAGGCGAGCTTGGCCACATGCACGGTGAC
TGCCACTC-AGCCCCTTCAAGGTGGTCTTAGTGTCG------AGAAAGGA---------TAATCGTCTAACCGCCTGTGT
TTACTCCTCGGAGACTGCCACAT-GGGCAATCTCATCACAACAACAGATCGATGTGAGCTTGTTGCTGCTAATCCTGGGA
TCCTTGTTGGTGATGCCCTTTACTGGTCACCTAGGTCTGTTGATGATTCCGGCATTCCCTTTTTTAATCTGGATGGGGTC
ACAGACAACATAATTGAGTTTGATTTGGATAGACAAAGTCTAGCTGTCATCAAGGGGCCTCCCGGTTTGAATGAATCCCG
CAACCATCAGATCATCCAGGCAGAGAATGGTGCTGTTGGTCTTGCCATATTGTCTCACGGAAGAGTCGAAATGTGGCAGA
GGAAGGTTAGTTGTCATGGTGGTGCTACATGGTTGCTGCATAAGACCGTTGAAATGCATACTGTTCTTGGGATAACTC--
-AGGCTGAAGG---ATTGATCACAGCGATGAAACTACTGGCATAAGATGAGGATAATGGTGTCATGTTTTTATATGCGGC
GCCCTATATCTACATGGTTCCACTGATGTCAATGCAACCCAGGAGACTTTATCTAAGCT---------ATTAT-------
--ACCA---------ATAAG---TGTCATCCTTTCACAAGTTTCTATGCACCAGGTGTTTGCCCTTCTTTAGTCCTTGTA
TGTTGGTAGTAA--------------------------------------------------------------------
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>chr3D_683
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-----------------------------------ATCGTGTTCACTCCGGTCCTGGACCCTCCCGACCGCATCCCTCCG
GAGCGCTTCAACACACTACATCAGATACGTGGCTTCCGGAAGGCCGAC---------CTACTCGGCTGCCGCCAAGGCCG
CATCCTCCTCCTGGAGATGGACTGGT------TCATTGTATGGGACCCCATCACCGGCGAGCATCACCATGTCGACATTC
CACCAGCGTTCGATAAGTTATCCTACCTCTATGGGGCTGTGCTCTGCGCTGCCACTGACCAGAGCCACATGCATGGCAGT
TGCCACTCGAGCCCCTTTAATTTGGTCTTGATGTCCCCGTGCCAAGGCTACGAAGATGGTACTCCACCCATCGCTTGTGT
ATACTCCTCGGAGACTGGGGTATGGGGCAATCCCATCTCGACAACAAATCGATGTGAGTTTGCTCGATGTAATCCTGGGG
TCCTTGTTGGTAATGTCCTCTACTGGACGTCTAAGAGTGTGAATGCCAAATCAAAA---TATTTGAATTTGGATCAGCTC
GGAGACGACATAATTGAGTTCGATTTGGATAAGCAGAGTCTTGCTGTGATCAAGGGGCCTCCAGGTCTTAATCATTCCAC
CACACATCAGATAATCCAGTCAGGGGATTGTGATGTTGGTCTTGCCATATTGTCTCACGGTAGATTTGAAATGTGGGAGA
GGAAGGTCAGCTGTCACGGTGGTGCCACATGGTTCCTGCAGAAGATTGTTGAAATGCATACTGTTCTTGGGCTCCCTCCT
CAGGCTGAAGG---ATCGGTGAGAGCGGTCGAAATACTTGGGTATGATGAGGAAAATGGTGCAATGTTTTTATTTGTGGA
CAACAATGTCTACATGGTTGAAGCAATGTCAATGCAATCCATGAAACTTTATCAATGCA---------GTCATCACAGCT
ATGCCA---------ATGAC---ATTCATCCTTTCACAAGTTTCTATGCACCAGGTGACTGCTCATCATTATTCCTTGTG
TTTTGGTAGTAACCTAATCTAGTAACAT----------------------------------------------------
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>chr3B_688
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----------------------------------------GTTCACTCCCGTCCTGGACCATCCCGACCGCATCCCTCCC
GAGCGCTTCGACGTACGACATCATGTCCGCGGCTTCCGGAAGTTCAAC---------CTGCTCGGGTGCCGCCACGGTCG
CGTCCTCCTCAGGTCCAGGAGGACGG------TCATTGTGTTGGATCCCATCACCAGCGAGCATCGCCGCATCGAAGCTC
CACCAGTGTTCACGGGGTTAGTCTACCAATATGGGACTGTGCTCTGCGCTGCCGCCGACCCACGCCACACACACGGCAGC
TGCCACTCTAGCCCCTTTACTCTGGTCTTGATGTCCCCGTGCCAAGGCTACAAAGACGGTACTCCACCCATCGCTTGTGT
ATACTCCTCGGCGACTGGCCTATAGGAAAATCACATCTCAACAACAGATCGATGTGTGTTTGTTTATTGTAATCCTGGGA
TCCTTGTTGGCAATGCCATTTACTGGTCGTCTCAGAGTGTCGATGCTGAATCAAAT---TTTTTGAATTTGGATGAGCTC
GCAGACGACATAATTGAGTTTGATTTGGATAGGCAGAGTCTTGCTGTGATCAAGGGGCCTCCAGATCTTAATCATTCCAC
CACGCATCAGATAATCCAAACCGAGGATGGTGATGTTGGTATTGCCATATTCTCTCATGGTAGATTCGAAATGTGGCAGA
GGAAGGTCAGTTGTTTCGGTGGTGCTACATGGTTCCTGCACAAGACCGTTGAAATACATACTGTTCTTGGGATCCCTCCT
CAGGTTGAAGG---ATCGGTGAGAGGGGTCAAAATACTTGGGTATGATGAGGATAATGGTGTAATGTTTTTATTTCTGGA
CTACAATGTCTACATGGTTCAAGTTATGTCAATGCAATCCATGAAACATTATCAAAGCA---------ATTAT-------
--GCAAGTTATGCTGATGAC---ATTCATCCTTTCACAAGTTTCTATGCACCAGGTGACTGCTCATCCTTAGTCCTTGTG
TTGTGGTAGTACCCAAATCTAATAAT------------------------------------------------------
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>chr3D_912
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------TCTATGGGGCTGTGCTCTGCGCTGCCGCCGACCAGGGCCATATGCACGGCAGC
TGCCACTCGAGGCCCTTTAATTTGGTCTTGATGGCCCCGTGCCAAGGCTCACAAAGCGATGGTCCACCCATCGCTTGCGT
ATACTCCTCGGAGACTGGACTATGGGGCGATCTGATCTCAACAACGGATCGATGTGAGTTTGTTCATTGTAATCGTGGGA
TCCTTGTTGGTAATGTCCTTTACTGGTCATCTAAGAGTGTGAGTGCCGAATCAAAT---TATTTGGATTTGGATGAGCTC
GCAGACGACATAATTGAGTTTGATTTGGATAGCCAGAGTCTTGCTTTGATCAAGGGGCCTCGAGGACTGAATTATTCCAC
CACGCATCAGATAATCCAGTTAGAGGATGGTGATCTTGGTCTTGCCATATTGTCTCATGGTAGATTCGAAATGTGGCAGA
GGAAGGTCAGTTGTCAAGGTGGTGCCACATGGTTCCTGCAGAAGACCCTTGACATTGATAGTATTCTTGGGCTCCCTTCT
CAGGTTGAGGAATCATCGATGAGAAAGGTGGAAATACTGGGGTATGATGAGGATAATGGTGTAATGTTTTTATTTCTGGA
CACCAATGTCTACATGCTTCAAGTGATGTCAATGCAATCCAGGAAGCTTCATCAAAGCC---------GTTAT-------
--GCCA---------ATAAC---TGTCATCCTTTCACAAGTTTCTATGGACCAGGTGAATGCTCATCCTTAGTCCTTGTA
TTGTGGTAGTAACCAAATCCAGTAATGTTC--TATATACATGGTTGATGGAAT---------------------------
--------------------------------------------------------------------------------
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>chr3A_919
--------------------------------------------------------------------------------
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----------------------------------GGCTGTGCTCTGCGCTGCCACCGACCAGAGCCACATGCATGGCAGC
TGCCACTCGAGCCCCTTTAATTTGGTCTTGATGTCCCCGTGCCAAGGCTACGAAGATGGTACTCCACCCATCGCTTGTGT
ATACTCCTCGGAGACTGGGGCATGGGGCAATCCCATCTCGACAACAAATCGATGTGAGTTTGCTCGATGTAATCCTGGGA
TCCTTGTTGGTAATGTCCTCTACTGGACGTCTAAGAGTGCGAATGCCAAATCAAAA---TATTTGAATTTGGATCAGCTC
GGAGACGACATAATTGAGTTCGATTTGGATAGGCAGAGTCTTGCGGTGATCAAGGGGCCTCCAAGTCTTAATCATTCCAC
CACACATCAGATAATCCAGTCAGGGGATTGTGATGTTGGTCTTGCCATATTGTCTCATGGTAGATTTGAAATGTGGGAGA
GGAAGGTCAGCTGTCACGGTGGTGCCACATGGTTCCTGCAGAAGATTGTTGAAATGCATACTGTTCTTGGGCTCCCTCCT
CAGGCTGAAGG---ATCGGTGAGAGCGGTCGAAATACTTGGGTATGATGAGGAAAATGGTGCAATGTTTTTATTTGTGGA
CAACAATGTCTACATGGTTGAAGCAATGTCAATGCAATCCATGAAACTTTATCAATGCA---------GTCATCACAGCT
ATGCCA---------ATGAC---ATTCATCCTTTCACAAGTTTCTATGCACCAGGTGACTGCTCATCATTATTCCTTGTG
TTTTGGTAGTAACCTAATC-------------------------------------------------------------
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>chr3B_1026
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----------------------------------------------------------------------TCGCTTGTGT
ATACTCCTCGGAGACTGGGCAATGGGACAATCTCATCTCAACAGCCGATCGATGTGAGTTTGTTAACTGTAATCCTGGGA
TCCTTGTTGGTAATGTCCTTTACTGGTCGTCTAAGAGGGTGAGGGCCCAATCAAAT---TATTTGAATTTGGATGAGCTG
GCAGATGACATAATTGAGTTTGATTTGGATAGGCATAGTCTTGCTGTGATCAAGGGCCCTCCAGGTCTGAATTATTCCAC
CACGCATCAGATAATCAAGGCAGAGGATGGTGCTCTTGGTCTTGCCATATTGTCTCATGGTACATTCGAAATGTGGCAGA
GAAAGGTTGGCTATCACGGTGGTGCCACATGGTTCCTGCACAAGACCTTTGAAATGCATACTGTTCTTGGGCTCCCTCCC
CAGGTTGAAGG---ATCGGTGAGAGGGGTCGAAATACTTGGGTATGATGAGGAAAATGGTGTAATGTTTTTATTTCTGGA
CGACAATGTCTACATGGTTGAAGTGATGTCAATGAAATCCTTGAAAATTTATCAAAGCAGTTATCAAAGTTAT-------
--GCCA---------ATGAC---ATTCATCCTTTCGCAAGTTTCTATGCACCAGGTGACTGCTCATCCTTAGTCCTTGTG
TTGTGGTAGTAACCAAATCTAGTAATAT----------------------------------------------------
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----------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
--------------------------------S----S-----------------------------------S------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------SS-------------------------------------------------------
--------S----------------------------------------------------S------------------
----------------S---------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
-------------------------------S------S----S-S--------------------------------S-
--------------------------------------S-----------S--S-----S------------------S-
-------------------------------------------------------------SS-----------------
-------------S------------------------------------------------------S--------S--
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------S-------------------------------S---------------------------------------
------------------S----------S---------------------SS---------------------------
-----S------S------S---S--------------------S-----------------------------------
------------------------------SSS------------------------------S----------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
----S--------------------------------------S--------------S---------------------
---------------------------------------------S----------------------------------
-------------------------------------------------------------------S------------
------------------S------------------------------------S----------------S-------
---------------------------------------------S----------------------------------
-------------------------------------------------------S-----S------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------S-------S---
------------------S------------------S-----------------------------S------------
--SS-----------------------------------S-------S---------S--------S-------------
------------------------------S-----------------------S-------------------------
-----S-------------------------------------------------------S------------------
---S----------------------------------------------------------------------------
------------------------------------------------------S------S--------
>forward_205
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GAAATTGCAACCCGCCGTTA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_1251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CAACGTTTGCGGGATTTGGA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_1152
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGCTGGTGTATGGGGCAATA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_2877
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGGC
TGTGAAGGAGTGATGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
