>input_sequence_58173
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-----------------------------------------------ATGGCGCGGCTCGGCGCTGTCGTGGCGGTGTAC
TTCTT---GGCGGCGGCGCTCGCGGCGGAGGGCATTCTCGACCCGGTGGACTTCCTCGCGCTGCAGGCGGTGCGGAGGTC
GCTCGACGACATGCCGGGCTCCGCCTTCTTCGACGCCTGGGACTTCACGGCGGACCCCTGCGGCTTCCCCGGCGTCTACT
GCGACGGGAACAGGGTGTCGGCGCTCGCGCTCGGCGACCCCAGGGCCGGGTCGCCGGGGCTCACCGGGAGGCTCGACCCG
GCGCTCGGCCGGATGTCGGCGCTCACCGAGCTCTCGCTCGTGCCCGGCCGCGTCCAGGGCGAGCTCCCGGCCTCCCTCGC
CTCCTGCTCCAACCTCCGCTTCCTGGCCGTCAGCAAGAACCTCCTCTCCGGCGGGATACCGGACGGCATTGGCGCGCTGT
CCAACCTCCGGACGCTCGACGTCAGCTTCAACCAGATCTCCGGCGCCATCCCGCCGTCCATTGCGTCGCTGCCATCGATC
ACCAACCTCATCCTCTGCCACAACCAGCTCACCGGTGGCATCCCCTCGTTCCCGGACTCCTCGCCGCTCCTCCGGATGGA
CCTCAAGCACAATGCCCTCTCCGGCGGCGTGCCCAGCCTGCCGGGCTCGCTGCAGTACCTCTCGCTCGCGGCGAACCGTC
TCACCGGCAACGTCGACTCCATGCTGCCCCGGCTGACTCGGCTCAACTACCTCGACCTCAGCATGAACCAGCTCCAGGGG
CCGGTCCCGGCGTCCGTCTTCACGTTGCCGCTCTCCGTGCTCCAGCTCCAGCGCAACTTCTTCTCCGGCCTCCTCCAGCC
GACGAGCGACGTGACGATCCCGGTGGTGGACCTGAGCTACAACCGGTTCTGGGGGCCTCTGTCGCCGCTCCTGGCGGGCG
TCGGGCAGCTGTACCTGAACAACAACCGGTTCACCGGCGACGTGCCGTCGCGGCTGGTGCAGGAGCTGGTGGGCACCGGC
GGGCTGCAGCTGCTGTACCTGCAGCACAACTTCCTGACCGGCATCGAGATATCGCCGTCGTCGTCGCTCCCCTCCGGCGT
CTCGCTCTGCCTGATGTACAACTGCATGGTGCCGCCGGTGTACGCGCCGTGCCCGATCAAGGCCGGCACGCAGAACACCC
GGCCGGCCGACCAGTGCCCGGAATGGAGGGGCTGA---------------------------------------------
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>chr1A_1_TraesCS1A01G254800
CCACGTTAGATCCAACGACACGACCAGAACACATACACGAGCGCCGCACCTGACAAGCCACACACACCACAGCGGAGCTG
GAGGAGCAGCTACGGTACACGCACCAAACCCGTCCTAAAACCCAGTG---CCCCTCCAGCTCAGAGAAAACGCCAACAGC
GCAGGTAGATCCAGCAACCCCCACGACCACCGTCACTGCCACTTGGGCCCGGCCGAACACGGCCCCACCCGAGGCGGGAC
CACGGATGAATCTCGCCCTCACGTATCGCCAACAGCTAGTTTTTTTACTGCCGCGGAACCATCCCGGCTCCCCAGGCCGG
AGGCATTCATGGCGCCCAACAGCCACATGGACGAGCGCGGGGCCCGCATGTCATCCCCT-CCGAACGCGCGCGCGACCCC
ACCCGAGCCTCAGGCTCGGACAGCCGTTTGAGCCACCGAGCCGCTAAAAACCGCGACAGGTGGTGGGCGAGCGCTCGCGA
AGGAGAGAAAGGGAGAGCAGAGGAAGCCA---------GAGTTGATAACTCCCACCGCGCCACT----------------
-TCGTCTCCACCTCCGACCGAATCCGTCCTCGCCAAGCCACCATCATTGCGCCACCGCCGCCTCGCTAGT----------
----------------GCTGCCGTCGTGGCCGGCC----GGCTGGCTTCGCGGCAAAGCCTTCCTTCTTCTACCGGAGCG
GAGTGGAGTGAGCGCGCCAACCACCGCCACGCGACACCGCCATTAAAGGCGCTCACGCGGCACCGCCACCTCCATTCCTC
CAC-------------GAGAAAGAGAGAGTGCGTGCGTGCGTGCTCCATTCCTCCCCTCACGGGAGCAGCAGCAAAGGCC
GCCAACGCC--------------CGCCGCACCGCGCGCCTTTAAGGGAGGGGAGGGGAGGACGGCGCGCCACCTTAAAGA
TTCCCACGCCGCGAGCGAGCGAGCTCTCCCGCCACGAGGTTGATCGGCGCTTTTAATTCTTCCTTCTTGCAGAAGGCCTC
TTCCGCTCCATTGCGAGCGAGCTTGAACCGAGGCGCTTTCGTGGGGGATGGCGCGGCTCGGCGCTGTCGTGGCGGTGTAC
TTCTT---GGCGGCGGCGCTCGCGGCGGAGGGCATTCTCGACCCGGTGGACTTCCTCGCGCTGCAGGCGGTGCGGAGGTC
GCTCGACGACATGCCGGGCTCCGCCTTCTTCGACGCCTGGGACTTCACGGCGGACCCCTGCGGCTTCCCCGGCGTCTACT
GCGACGGGAACAGGGTGTCGGCGCTCGCGCTCGGCGACCCCAGGGCCGGGTCGCCGGGGCTCACCGGGAGGCTCGACCCG
GCGCTCGGCCGGATGTCGGCGCTCACCGAGCTCTCGCTCGTGCCCGGCCGCGTCCAGGGCGAGCTCCCGGCCTCCCTCGC
CTCCTGCTCCAACCTCCGCTTCCTGGCCGTCAGCAAGAACCTCCTCTCCGGCGGGATACCGGACGGCATTGGCGCGCTGT
CCAACCTCCGGACGCTCGACGTCAGCTTCAACCAGATCTCCGGCGCCATCCCGCCGTCCATTGCGTCGCTGCCATCGATC
ACCAACCTCATCCTCTGCCACAACCAGCTCACCGGTGGCATCCCCTCGTTCCCGGACTCCTCGCCGCTCCTCCGGATGGA
CCTCAAGCACAATGCCCTCTCCGGCGGCGTGCCCAGCCTGCCGGGCTCGCTGCAGTACCTCTCGCTCGCGGCGAACCGTC
TCACCGGCAACGTCGACTCCATGCTGCCCCGGCTGACTCGGCTCAACTACCTCGACCTCAGCATGAACCAGCTCCAGGGG
CCGGTCCCGGCGTCCGTCTTCACGTTGCCGCTCTCCGTGCTCCAGCTCCAGCGCAACTTCTTCTCCGGCCTCCTCCAGCC
GACGAGCGACGTGACGATCCCGGTGGTGGACCTGAGCTACAACCGGTTCTGGGGGCCTCTGTCGCCGCTCCTGGCGGGCG
TCGGGCAGCTGTACCTGAACAACAACCGGTTCACCGGCGACGTGCCGTCGCGGCTGGTGCAGGAGCTGGTGGGCACCGGC
GGGCTGCAGCTGCTGTACCTGCAGCACAACTTCCTGACCGGCATCGAGATATCGCCGTCGTCGTCGCTCCCCTCCGGCGT
CTCGCTCTGCCTGATGTACAACTGCATGGTGCCGCCGGTGTACGCGCCGTGCCCGATCAAGGCCGGCACGCAGAACACCC
GGCCGGCCGACCAGTGCCCGGAATGGAGGGGCTGACATGGGTGGCTGCTCTCAGGAGCCACGACAAAAACGATCGCCGCC
GGATCGCCTCTGATCGGGGAGGGAGGAGCAAGGACAAGAATGGAGGAGATTGCAAACGGTGGTCTCTGATTCTTTGATTA
AATTTGTCAAGATTACTGGTGTTTTACTGTGGATTATTATTCTTTTTTGTTTGGGAAAGGGATAGCAACGTCACAGACAG
AAGAACAAGTTGGTGCTTTAATAATTG-TGGTTTATAGGTGTAGTTTTTTGTTTAGCTGGTGTAAGTGTATGTGCTTGTG
TCTCTGTTGTATAGACAGTGAGTGAGTAATATGGCAA---------------------TGACGATGAGATGGTGGTGTTA
GGATCAGTGGTGTTTTTTATGATGATCATCAAATATGGCAATGTGGCAAGCATTCGCTGTTGAAATTTGTAGTAAGATGT
TGTACGAGATTGAATGAAAATGATGAACAATGGTTACAAGCTCACAGTTCTTTTGGTTGGCGTGGTGTATAAGCATGTGT
GTTGTTGATTGCATTTCGTGATGTTATGTGTGAGAGATCATGGGATCGACCTTTCGCTGTGGGGCGTTCACGTTGTACTT
GGCTTCTACTCCCTCTGTAAACTAATATAAGAGCGTTTAGACCACTAAAGTAGTGATCTAAACGCTCTTATATTAGTTTA
CGGAGGGAGTACGCGCTAGCCCTCTGAGCAATCATAATGCATGCATCTGCGGATCTCAAGCCTGAACTCTGGGGTCCTGA
TTTG-TGATTACTTG-------------------CTTGCTTGGCTTGCAGATTTGCGCCGCTGTGAACTTATTAAACAAC
TTATGGCGGAGTGATTGTGGCACAAAGAAAGTGGTCTTCTCGTAGTGAACTCTGCTCTGCATCATTTCCATTGATTTTCC
TTTTGACCCCGCATTCCCGGTGAATTCACTTTGCTCGGTTCGGCGGTTCCCCTGTTTCCTCTTGTCATTATCAACTGGTC
AAGCTATTTTGGTTCGAACAGCTTTCACCTCGTGTCC
>chr1D_97
ACACA---------------------------------------------------------------------------
---------------------CACCAAACCCGTCCTAAACCCCAGTA---CCCCTCCAGCTCAGAAAAAACGCCAAGAGC
GCAAGTAGATCCAGCAACCCCCACGACCACAGTCACCGACACGCGGGCCCGGCGGAACACGGACCCACCAGAGGCAGGAC
CACGGATGAATCTCGCCCTCACGTATCGCCAACAGCTAGTTTTTTTACTGCCGCAGAACCATCTCGGCTCCCCAGGCCGG
AGGCATTCATGGCGCCCAACAGCCACATGGACGAGCGCGGGACCCGCATGTCATCCCCCCCCGAACGTGCGCCCGGCCCC
ACCCGAGCCTCAGGCTCGGACAGCCGTTTGAGCCACCGAGCCACTAAAAACCGCGACAGGTAGTGGGCGAGTGCTCGCGA
AGGAGAGAAAGGGAGAGCAGAGGAAGCCAAGCGGAGCAGAGTTGATTACTCCCAC-----CGCGCCACCACCACCACCAC
GTCGTCTCCACCTCCGACCGAATCCGTCCTCGCCAAGCCACCATCATTGCGCCACCGCCGCCTCGCTAGTTTCTTACTCC
TCCCCCGCGAGCTACTGCTGCCGTCGTGGCCGGCTGGCTGGCTGGCTTCTCGCCAAAGCCTTCCTTCTTCTACTGGAGTT
GAGTGGAGTGAGCGCGCCACCCACAGCCACGCCCGCCC-CCATTAAAGGCGCTCACGCGGCACCGCCACCTCCATTCCTC
CAC-------------GAGAAAGAGAGACTGCGTGCGTGC----TCCATTCCTCCCCTCACGGGAGCAGCAGCAAAGGCC
GCCAACGCCCAGC--------CACGCCGCACCGCGCGCCTTTAAAGA-----AGGGGAGGACGGCGCGCCACCTTAAAGA
TTCCCACGCCGCAAGCTC----GCTCTCCCGCCACGAGGTTGATCGGTGCTTTTAATTCTTCCTTCTTGCAGAAGGCCTC
TTCCGCTCCATTGCA----AGCTTGAACCGAGGTGCTTTCGTGGGG-ATGGCGCGGCTCGGCGCTGTCGTCGTGGTG---
TTCTT---GGCGGCCGCGCTCGCGGCGGAGGGCATTCTTGACCCGGTGGACTTCCTCGCGCTGCAGGCGGTGCGGCGGTC
GCTCGACGACATGCCGGGTTCCGCCTTCTTCGACGCCTGGGACTTCACGGCGGACCCCTGCGGCTTCCCCGGCGTGTACT
GCGACGGGAACAGGGTGTCGGCGCTCGCGCTCGGCGACCCGCGGGCGGGGTCGCCGGGGCTGACCGGGAGGCTCGACCCG
GCGCTCGGCCGGATGTCCGCGCTCACCGAGCTATCGCTCGTGCCCGGCCGAGTCCAGGGCGAGCTCCCGGCTTCCCTCGC
CTCCTGCTCCAACCTCCGCTTCTTGGCCGTCAGCAAGAACCTCCTATCCGGCGGGATACCGGACGGCATTGGCGCGCTGT
CCAACCTCCGGACGCTCGACGTCAGCTTCAACCAGATCTCCGGCGCCATCCCGCCGTCCATTGCGTCGCTGCCGTCGATC
ACCAACCTCATCCTCTGCCACAACCAGCTCACCGGTGGCATCCCGTCGTTCCCGGACTCCTCGCCGCTCCTCCGGATGGA
CCTCAAGCACAATGCCCTCTCCGGCGGCGTGCCCAGCCTGCCGGGCTCGCTGCAGTACCTCTCGCTCGCGGCGAACCGTC
TCACCGGCAACGTCGACTCCGTGCTGCCCCGGCTGACTCGGCTCAACTACCTCGACCTCAGCATGAACCAGCTCCAGGGG
CCGATCCCGGCGTCCGTCTTCACATTGCCGCTCTCCGTGCTCCAGCTTCAGCGCAACTTCTTCTCCGGCCTCCTCCAGCC
GACGAGCGACGTGACGATCCCGGTGGTGGACCTGAGCTACAACCGGTTCTGGGGGCCTCTGTCGCCGCTCCTGGCGGGCA
TTGGGCAGCTGTACCTGAACAACAACCGGTTCACCGGCGATGTGCCGTCGCGGCTGGTGCAGGAGCTGGTGGGAACCGGC
GGGCTGCAGCTGCTGTACCTGCAGCACAACTTCCTGACCGGCATCGAGATATCGCCGTCGTCGTCGCTCCCCTCCGGCGT
CTCGCTCTGCCTGATGTACAACTGCATGGTGCCGCCGGTGTACGCGCCGTGCCCGATCAAGGCCGGCACGCAGAACACCC
GGCCGGCCGACCAGTGCCCGGAATGGAGGGGCTGACATGGATGGCTGCTCTCAGAAGCCACGACAAC-ACGATTGCCGCC
GGATCGCCTCTGATCGGGGAGG-AGGAGCAAGGACAAGAATGGAGGAGATTGCAAACGGTGGTCTCTGATTCTTTGATTA
AATTTGTCCAGTTTACTAGCGTTTTACTGTGGATTATTATTCTTTTT-GTTGGGGGAGGGGATAGCAATGTCACAGACAG
AAG---AAGTTGGTGCTTTAATAATCG-TGGTTTATAGGTGTAATTTTTTGTCTAGCTGATGTAAGTGTATGTGCTTGTG
TCTCTGTTGTATAGACAGCGAGTGAGTAAGTGGTGAACATTGGGTCTTGATGTTGTCCTGACGATGAGATGGTGGTGTTA
GGATCAGTGGTGTTTTCTATGATGATCATCAAATATGGCAATGCGGCAAGCGTTCGCTGTCTAAATTGTACGTACGATGT
TGTACGAGATTGAATGAAAATGATGAACAATGGTTACAAGCTTACAGTTGTTTTGGTTGGCGTGGTCTATAAGCATGTGT
TGTGTTGATTGCATTTCGTGATCTTATGTGTGAGAGATCATGGGATCGACCTTTTGCTGTGGGGCGTTCACGTTGTACTT
GGCTTCTAC-----------------------------------------------------------------------
------------GCGATGGCCCTCTGAGCAATCATAATGCATGCATCTGCAGATCTCAAGCCTGACTAGGAAA--CCTGA
TTTG-TGATTACTT-------ATTGCCAGTTGCAATTGCTTGGCTTACAGATCTGTGCTT---------------ACCAC
TTATGGCAGAGTGATTCCGGCAATAAGAAAGTGGTCTTCTTGAAGTGAAT-----TCTGCATCATTTTTATTGATTTTCT
TTTTGACACCACATT-----------------------------------------------------------------
-------------------------------------
>chr1B_109
--------------------------------------------------------------------------------
----------------------------CCCCTCCTAAACCCCAGTACTACCCCTCCAGCTCAGAAAAAACGCCAACAGC
GCAGGTAGATCCAGCAACCCCCTCGACCACCGTCACTGACACGCGGGCCCGACGGAACGCGGACCGACCCGAGGCCGGAC
CACGGATGAATCTCGCTCTCACGTATCGCCAACAGCTAGTTTTTTTACTGCCGCAGAACCATCTCGGCTCCCCAGGCCGG
AGGCATTCATGGCGCCCAACAGCCACATGGACGAGCGCGGGACCCGCATGTCATCCCCT-CCGAACGTACGCGCGGCCCC
ACCCGAGCCTCAGGCTCGGACAGCCGTTTGAGCCACCGAGCCACTAAAAAACGCGACAGGTAGTGGGCGAGTGCTCGCGA
AGGAGAGAAAGGGAGAGCAGAGGAAGCCAAGCGGAGCAGAGTTGATTACTCCCAC-----CACT----------------
-TCGTCTCCACCTCCGACCGAATCCGTCCTCGCCAAGCCACCATCATTGCGCCACCGCCGCCTCGCTAGTTTCTTACTCC
TCCCCTGCGAGCTACTGCTGCCGTCGTGGCCGGCCGGCTGG-----------------------------------AGTG
GAGTGGAGTGAGCGCGCCACCCACCTCCACGCCC-----CCATTAAAGGCGCTCACGCAGCACCGCCATCTCCATTCCTC
CACGAGAAAGGGGGCTGAGAGAGAGAGGCTGCGTGCGTGC----TCCATTCCTCCCCTCACGGGAGCAGCAGCAAAGGCC
GCCAACGCCCAGCGCCGCCCCCACGCCGCACCGCGCGCCTTTAAAGA-----AGGGGAGGACGGCGCGCCACCTTAAAGA
TTCCCACGCCGCAAGCTC----GCTCTCCCGCCACGAGGTTGATCGGTGCTTTTAATTCTTCCTTCTTGCAGAAGGCCTC
CCGCTCCAT-TTGCA----AGCTTGAACCGAGGCGCTTTCTGGGGG-ATGGCGCGGCTCGGCGCTGTCGTGGTGGTG---
TTCTTCTTGGCGGCGGCGCTCGCAGCGGAGGGCATTCTTGACCCGGTGGACTTCCTCGCGCTGCAGGCCGTGCGGAGGTC
GCTCGACGACATGCCGGGCTCCGCCTTCTTCGACGCCTGGGACTTCACGGCGGACCCCTGCGGCTTCCCTGGGGTGTACT
GCGACGGGAACAGGGTGTCGGCGCTCGCGCTCGGCGACCCGCGGGCCGGGTCGCCGGGGCTGACCGGGAGGCTCGACCCG
GCGCTCGGCCGGATGTCCGCGCTCACCGAGCTCTCGCTCGTGCCCGGCCGCGTCCAGGGCGAGCTCCCGGCCTCCCTCGC
CTCCTGCTCCAACCTCCGCTTCTTGGCCGTCAGCAAGAACCTCCTCTCCGGCGGGATACCGGACGGCATTGGCGCGCTGT
CCAACCTCCGGACGCTCGACGTCAGCTTCAACCAGATCTCCGGCGCCATCCCACCGTCCATTGCGTCGCTGCCGTCGATC
ACCAACCTCATCCTCTGCCACAACCAGCTCACCGGTGGCATCCCGTCGTTCCCGGACTCCTCGCCGCTCCTCCGGATGGA
CCTCAAGCACAATGCCCTCTCCGGCGGCGTGCCCGGCCTGCCGGGCTCGCTGCAGTACCTCTCGCTCGCGGCGAACCGTC
TCACCGGGAACGTCGACTTTGTGCTGCCCCGGCTGACTCGGCTCAACTACCTCGACCTCAGCATGAACCAGCTCCAGGGG
CCTATCCCGGCGTCCGTCTTCACATTGCCGCTCTCCGTGCTCCAGCTTCAGCGCAACTTCTTCTCCGGCCTCCTCCAGCC
GACGAGCGACGTGACAATCCCGGTGGTGGACCTGAGCTACAACCGGTTCTGGGGGCCTCTGTCGCCGCTCCTGGCGGGCA
TTGGGCAGCTGTACCTGAACAACAACCGGTTCACCGGCGATGTGCCGTCGCGGCTGGTGCAGGAGCTGGTGGGCACCGGT
GGGCTGCAGCTGCTGTACCTGCAGCACAACTTCCTCACCGGCATCGAGATATCGCCGTCGTCGTCGCTCCCCTCCGGCGT
CTCGCTCTGCCTGATGTACAACTGCATGGTGCCGCCGGTGTACGCGCCGTGCCCGATCAAGGCCGGCACGCAGAACACCC
GGCCAGCCGACCAGTGCCCCGAATGGAGGGGCTAAGATGGCTGGCTGCTCCCAGAAGCCACGACAAC-ACGATTGCCA--
-GATCGCCTCTGATCGGGGAGG-AGGAGCAAGGA--AGAATGAAGGAGATTGCAAATGGTGGTCTCTGATTCTTTGATTA
AATTTGTCCAGTTTACTAGCGTTTTACTGTGGATCATTATTCTTTTT-GTTGGGGGAGGGGATAGCAATGTCACAGACAG
AAG---AAGTTGGTGCTTTAATAATTCATGGTTTATAGGTGTAATTTTTTGTCTAGCTGGTGTAAGTGTATGTGCTTGTG
TCTCTGTTGTATAGACAGTGAGTGAGTAAGTGGTGAACATTGGGCCTTGATGTTGCCCTGACGGTGAGATGATGGTGTTA
GGATCAGTGGTGTTTTTTATGATGATCATCAAATATGGCAATGTGGCAAGCATTCGCTGTCGAAATTT---GTACGATGT
TGTACGAGATTGAATGAAAACGACGAACAGTGGTTACAAGCTTACAGTTCTTTTGGTTAGCGTGGTCTATAATCATGTGT
TGTGTTGATTGCATTTCGTGATCTTATGTGTGAGAGATCATGGGATCAACCTTTTG----------TTCACGTTGTACTT
TGCTTCTAC-----------------------------------------------------------------------
------------GCGATAGCCCTCTGAGCAATCATAATGCATGCATCTGCAGATCTCAAGCCTGACTATGAAA--CCTGA
TTTTCTGATTACTTGTTGTCAATTGCAAGTAGTACTTGCTTGGCTTGCAGATTTGCGCCGCTGTGTGCTTATTAAACAAC
TTATGGCAGAGTTATTATGACAAAAGGAAAGTGGTCTTCTTGAAGTGAAT-----TCTGCATCATTTCCATTGATTTTCT
TTTTGACCCCGCGTTCCCAGTGAATTCACTTTGCTCTGTTCGGCTCTTCCCCTATTTGTTCTTGTCCTGATCAACCGGTC
AAGCTGTTTTG--------------------------
>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------------S------S------------------S--------------
--------------------------------------S---SS---------S--------S------------S----
------------------------------------------------------S--------S----------------
-----------------------------------------S-------------------------S-------S----
------------------------------------------S------------------S---------S--------
----------------------------------------------S--------SSSSS--------------------
--------------------------------------------------------------------------------
-------------------------------------------------S--S--------------------S----S-
-------------------S------------SSSS--S-----------------------------------------
----------------------------S-----------SSSS------------------------------------
--------------------------------------------S-SSSSSS----------------------------
------------S---SSSSSS-------------------------S--------------------------------
--------------SSSSS---------------------------S-------------------------S----SSS
--------------------------------------S-----------------------------------------
---------------------------------------------------------------------------S----
----------------------------------------SS-------------------S------------------
-----------------S--------------------------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------S-----------------------------------
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--------------------S-----------------------------------------------------------
---S-------------------S-----------------------S--------------------------------
-------------------------------------------------------------------------------S
-S--------------------------------------S---------------------------------------
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----------------------------------------S-------------S-----------SS-----S------
----------------------S---------------------------------------------------------
--------S--S-----S-S---------------------------S---S---S-S----------S-----------
---SSS-------------------------------------S--------S---------------------------
-----------------------------SSS-SS---------------------------------------------
------------------------------------------------------------S-------SSS---S-----
------------------------------------------S-----------------------S-------------
SS--------------------S-------------------------------S-------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S----------------------------------S--------------SSSSSSSSSS-----
-----------------------------------------------------------------SS-------------
-------S--------S-----S-----------------S-S------SSSSSS------------------------S
------------------S-----------------S-------SS-------S---SS-------S-S------S----
-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_100
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GAGGAGCAGCTACGGTACAC------------------------------------------------------------
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>reverse_1276
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---------------------------------------------------------------------------CTACT
GCGACGGGAACAGG------------------------------------------------------------------
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>forward_539
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---------------------------------------AGTTGATAACTCCCACCGCG---------------------
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>reverse_2452
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---------------------------------------------------TGGGAAAGGGATAGCAACGT---------
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