>input_sequence_58151
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------------------------------------------------ATGGTCTCCGCTCTGTCCCACGTCATCCGCGC
CACACCGGAACAGCAACAAGCCTACTACCCCGCCGGATCCGCCGCTGTCTCAGGAGAACAGCAGCATCAGCACGATGCGG
CGGCTGCCGCGGCCATCGCTGAGGAACAAGGTAATCAACAATAGCTGCTAGCATCCATCGATGTATCCAAACGTAGTCTT
CTTTTGTCCGTGTGCACGTCGGATGGCGAGAGCATAGCACGCGCGCCTTCTGCTAGATGAATCGCAGCCATTTGGAAACT
TTGAATCATCCAAACACGTCGATATAACTACTAATTTCCTTGTCTTCTTCATCCTAATATGTGGCGAGCTTAATTTAGTG
GTAAAATTGCTGTATAAACTCTGGAGAGAAGTACAATAATTTTGCCTGTTTCGTGCACGAAGATACGCTACCAGCGAAGT
GCTTAAATTCAACTCCTCGCCTTATTCAATCCTGCACGAATATTTTATGCGCATACGTACGTGTATAAGTGTATTACGTT
AGCTCTGACGAAACCACAAATTAATTATCAATTGTGTTCATCTGGGGGATGTGGCTGCAGGGAGGAAGCGGCACTACAGA
GGGGTGAGGCAGCGGCCATGGGGAAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAAGCGGCTCGTGTATGGCTCGGCAC
CTTTGACACGGCTGAGGACGCCGCCATCGCCTACGACGAAGCGGCGCTGCGCTTCAAGGGCACCAAGGCCAAGCTCAACT
TCCCCGAGCGCGTCCAGGGACGCACCGACCTCGGCTTCGTCGTCACGCGCGGCATTCCCGACAGATTGCAGCAACAACAA
CACTACCCCGCCACCGTGGGGGCGCCGGCAATGCGGCCACCGCCGCAC------CAGACCGTGGTGCCGTACCCTGACCT
CATGCGGTATGCACAGCTGTTGCAGGGCGCTGGCAGTGCCGGGGGCGCTGTCAACCTGCCGTTTGGCGCCATGTCGCCCC
CGTCGATGTCCTCGTCGTCGCCGCACATACTCGACTTCTCGACACAGCAGCTCATCCGAGTGAGCCCAGCGTCTCCCGCG
GCGGCAATATCGAGCTCAGGCACAACGGGGCCGTCCACCTCATCGTCCACGACCACGGCATCGTCGCCAGGTGCTGCATG
GCCGTACACTGGGGAGCACAAAAATAATAAAGACCCGTGA----------------------------------------
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------------
>chr2A_1_TraesCS2A01G288000
GCCTTTAACAACGGCGGCGCATGCGGGGCACGTGGAGTCATGAGCAATGTTCTGGTGTAACGAGTAGGCCTTGGAGTTTA
TCTTCTCACGGAATGAGAATATAAGCCAACCAAATATCTTGACCTGGAGTGGTACCCGAGAATACCAAATGTTGAGTGAC
TTGGCGTTGAGATTAGTTCATACAGATCTAAAATATGTCATATAAAAGTGTAATAATTTGAGTATTTAGTGCAAAAAAAT
TGGTATTATCTCTTTTTCGAATATTTTTTGATTTCTTACACACGTGTCACATAGTAAATTTGGTATTATCTCCATTGAAT
GAACGCGCAATGTTATTCATACATCATCATATTGTAATAATTTGTCTGT----TTAGAGTGTAAAAGATATATTACTTCT
TGTCCAGACTCCAAAATGCTGAAATTTTGTACAGTACATATTTTGCACTAAGAAATTTAATGGCAATACCGAAATACTCC
GTACAAAGTGCTCAGCCAAAGGTGCTAGAACTGGGACACTGCGCGCCTCTGCCGAGTAACAACAGACTTCTCCTTCTATC
ACTTCCCCTAGCTATCATTAAAGGCGTTCAGAAGAGCTCGTCTCCTCTCTCT----CCCTCCGCGTTCTTATCAGTACGT
TGTCCGCGCCTAGGCACCAAAGTCCAAAGCAACAGCCATAGCTCGATCTCGATCCCCGGCGCGACGAAAGAGAAAGAAGC
GGCGGCAGGTCGACAGGTCGATCAACTAAGGTGGATCCCCGGAGGCATGGGAAGAGGCCCCTACCCGCCGACGAGGAGGA
GGAACAGCCGCCACCGCCGCCGTCAGCAGCCAAGCACGAGCAGGTGGAGGAGCAGCCGTATCACCCCCTCATCGCGCGCG
CTCTGCAGCAGCAAGGAGCTGCCAGCGCCGGCGGAAGCTCGGGAGCAGATGTGGCCGACCCTTCCCCGTCACCGGAGGCG
TACGCGCAGTACTACTACTCGGCGCGCGCCGACCACGACGCCACCGCCATGGTCTCCGCTCTGTCCCACGTCATCCGCGC
CACACCGGAACAGCAACAAGCCTACTACCCCGCCGGATCCGCCGCTGTCTCAGGAGAACAGCAGCATCAGCACGATGCGG
CGGCTGCCGCGGCCATCGCTGAGGAACAAGGTAATCAACAATAGCTGCTAGCATCCATCGATGTATCCAAACGTAGTCTT
CTTTTGTCCGTGTGCACGTCGGATGGCGAGAGCATAGCACGCGCGCCTTCTGCTAGATGAATCGCAGCCATTTGGAAACT
TTGAATCATCCAAACACGTCGATATAACTACTAATTTCCTTGTCTTCTTCATCCTAATATGTGGCGAGCTTAATTTAGTG
GTAAAATTGCTGTATAAACTCTGGAGAGAAGTACAATAATTTTGCCTGTTTCGTGCACGAAGATACGCTACCAGCGAAGT
GCTTAAATTCAACTCCTCGCCTTATTCAATCCTGCACGAATATTTTATGCGCATACGTACGTGTATAAGTGTATTACGTT
AGCTCTGACGAAACCACAAATTAATTATCAATTGTGTTCATCTGGGGGATGTGGCTGCAGGGAGGAAGCGGCACTACAGA
GGGGTGAGGCAGCGGCCATGGGGAAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAAGCGGCTCGTGTATGGCTCGGCAC
CTTTGACACGGCTGAGGACGCCGCCATCGCCTACGACGAAGCGGCGCTGCGCTTCAAGGGCACCAAGGCCAAGCTCAACT
TCCCCGAGCGCGTCCAGGGACGCACCGACCTCGGCTTCGTCGTCACGCGCGGCATTCCCGACAGATTGCAGCAACAACAA
CACTACCCCGCCACCGTGGGGGCGCCGGCAATGCGGCCACCGCCGCAC------CAGACCGTGGTGCCGTACCCTGACCT
CATGCGGTATGCACAGCTGTTGCAGGGCGCTGGCAGTGCCGGGGGCGCTGTCAACCTGCCGTTTGGCGCCATGTCGCCCC
CGTCGATGTCCTCGTCGTCGCCGCACATACTCGACTTCTCGACACAGCAGCTCATCCGAGTGAGCCCAGCGTCTCCCGCG
GCGGCAATATCGAGCTCAGGCACAACGGGGCCGTCCACCTCATCGTCCACGACCACGGCATCGTCGCCAGGTGCTGCATG
GCCGTACACTGGGGAGCACAAAAATAATAAAGACCCGTGAGAGATCAGTGGATCGAAGGTGCTTGCGATCCATCGGGACA
TGTCTTAGCAGTAGATGAGGAATACGCATGCATTCATCATGCAATAATGTGGGTAAGTGTTGGTCAATTAATTTTGCTGG
TGAACATTTCTTTCCTTCTTCTGATCCCCAAATTTGTTTATCTAAAGCTATTGTTTTGTTTATTTTTACTTTAATAATGG
GTG--TTTTTTTTGTGGGTAATGGGTGACTCTTAACTAGCTTGGTACTAGTTGTACTAAATTAGTGACAACTAACATAGA
ACAGAGGGAGACCTT-GTTCCTTGCT-TAATTGTTTATCATTTCTCTTCTCTTTTATGAACTGTACATAAGTCTTAGATG
AAAGTACATCCATTCAGTACCAATACCTTTGGATTGTAGACACAAAACTCAAGTCAAATAGTTAAATATCAGATGACTTT
AGGAACATTGTTTGCAAAATTGAACTCATAGAAAAAAAGGGGAACCTTCTCAAATTTCTGACAATTAACCTAAAATTCTG
ACTTTGTGTGTGCTGATTATTCTTTTATAACATCTTGCATTGAGCATTTGTTCTTTCAATTTGCCAGCTAATATGACATA
TAGCTACGTCTTTGTCAAGTGTAACTATATCAACCATGCATTCATGTGCCATAGAGTTCTTGCAGGTATGTACATGCATC
ATTTTTCAAACTCAAGGTATGAGGATATACTTTCATAAGAAATAAAATGGAGAGAACCGTAACGAGAATATAATCTAGAA
TATATTGTGAAGGGCATTTTGTATTAAGTGCACATCCATGAGTACTGGTACTAATTACT----AACCAAGTTTGCTGAAG
TCATCGCTTGCTTTAATCACCAGATGCTAGCACTATCATGCATCTTCTTTTTTTGCGAGTAAACTACCATGCATCTATAT
GATGGTGATAA----TGACACGAACATGCGTCTGACACGTGCATATCTTCAGTTTCTAAGTAGTTTGTTAACTAGTAGAA
TATATACGTGTG
>chr2B_1
GCCTTTAACAACGGCGACGCATGCAGGGCACGTGGAGTCATGAGCGATGTTCTGGTGTAGCGAGTAGGCTTTGGAGTTTA
TCTTATCACAGAATGAGAATAGAAGCCAACCAAATATCTTGACCCGGAGTGGTACCCGAGAAGGCCAAATGTTGAGTGCC
TTAGCGTTGAGATTAGTTCATACAGATCTAAAATATGTCATATAAAAGTGTAA-AATTTGATTATTTAGTGCAAAAAAAT
-GGTATTATCTCTTTA-CGAATATTTTTTGATTTCTTACACACGTGTCACATAGTAATTTTGGTATTATCTCCATTGAAT
GAACGGGAAATGTTATCCATACATCATCATATTGTAATAATTCGTCTGTTTAATTAGAGTGTAAAAGATATATTACTCCT
TGTT-AGACTCCAAAATGCTGAAATTTTGTAC-----ATATTTTGCACTAAGAAATTTAATGGCAATACCGAAATACGCC
GTACAAAGTGCTCAGCCAAAGGTGCTAGAACTGGGACACTGCGCGCCTCTGCCGAGTAACAACAGACTTCTCCTTCTATC
ACTTCCCCTAGCTATCATTAAAAGCGTTCAGAAGAGCTCGTCTCCTCTCTCT----CCCTCCGCGTTCTTATCAGTACGT
TGTCCGCGCCTAGGCACCAAAGTCCAAAGCAACAGCCATAGCTCGATCTCGATCCCCGGCGCGACGAAAGAAAAAGAAGC
GGCGGCAGGTCGACAGGTCGATCAACTAAGGTGGATCCCCGGAGGCATGGGAAGAGGCCCCTACCCGCCGACGAGGAGGA
GGAACAGCCGCCACCGCCGCCGTCAGCAGCCAAGCACGAGCAGGTGGAGGAGCAGCCGTATCACCACCTCATCGGGCGCG
CTCTGCAGCAGCAAGGAGCTGCCAGCGCCGGCGGAAGCTCGGGAGCAGATGTGGCCGACCCTTCCCCGTCACCGGAGGCG
TACGCGCAGTACTACTACTCGGCGCGCGCCGACCACGACGCCACCGCCATGGTCTCCGCTCTGTCCCACGTCATCCGCGC
CACACCGGACCAGCAACAAGCCTACTACCCCGCCGGATCCGCCGCTGTCTCAGGAGAACAGCAGCATCAGCACGATGCGG
CGGCTGCCGCGGCCATCGCTGAGGAACAAGGTAATCAACAATAGCTACTAGCATCCATCGATGTATCCAAACGTAGTCTT
CTTTTGTCCGTGTGCACGTCGGATGGCGAGAGCATAGCACGCGCGCCTTCTGCTAGATGAATCGCAGCCATTTGGAAACT
TCGAATCATCCAAACACGTCGATATAACTACTAATTTCCTTGTTTTCTTCATCCTAATATGTGGCGAGCTTAATTTAGTG
GTAAAATGGCTGTATAAACTCTGGAGAGAAGTACAATAATTTTGCCTGTTTCGTGCACGAAGATACGCTAGCAGCGAAGT
GCTTAAATTCAACTCCTCTCCTTATTCAATCCTGCACGAATATTTTATGCGCATACGTACGTGTATAAGTGTATTACGTT
AGCTCTGACGAAACCACAAATTAATTATCAATTGTGTTCATCTGGGGGATGTGGCTGCAGGGAGGAAGCGGCACTACAGA
GGGGTGAGGCAGCGGCCATGGGGAAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAAGCGGCTCGTGTGTGGCTCGGCAC
CTTTGACACGGCTGAGGACGCCGCCATCGCCTACGACGAAGCGGCGCTGCGCTTCAAGGGCACCAAGGCCAAGCTCAACT
TCCCCGAGCGCGTCCAGGGACGCACCGACCTCGGCTTCGTTGTCACGCGCGGCATACCCGACAGATTGCAGCAACAACAA
CACTACCCCGCCACCGTGGGGGCGCCGGCAATGCGGCCACCGCCGCACCAGCTGCAGACCGTGGTGCCGTACCCTGACCT
CATGCGGTATGCACGGCTGTTGCAGGGCGCTGGCAGTGCCGGGGGCGCTGTCAACCTGCCGTTCGGCGCCATGTCGCCCC
CGTCGATGTCCTCGTCGGCGCCGCACATACTCGACTTCTCGACACAGCAGCTCATCCGAGTGAGCCCGGCGTCTCCCGCG
GCGGCAATGTCGAGCTCAGGCACAACGGGGCCGTCCACCTCATCGTCCACGACTACGGCATCGTCGCCAGGTGCTGCATG
GCCGTACACTGGGGAGCACAAAAATAATAAAGACTCGTGAGAGATCAATGGATCGAAGGTGCTTGCGATCCATCGGGACA
TGTCTTAGCAGTAGATGAGGAATACGCATGCATTCATCATGCAATAAGGTGGGTAAGTGTTGGTCAATTAATTTTGCTGG
TGAACATTTCTTTCCTTCTTCTCATCCCCAAATTTGTTTATCTAAAGCTCTTGTTTTGTTTATTTTTACTTTAATAATGG
GTGATTTTTTTTGGCGGGTAATGGGTGACTCTTAACTAGCTAGGTACTAGTTGTACTAAATTAGTGACAAGTAACATAGA
ACAGAGGGAGACCTT-GTTCCTTGGTCTAATCGTTTATCGTTTCTCTTCTCTTTTATGAAGTGTACATAAGTCTTAGATG
AAAGTACATCCATTTAGTACCAATACCTTTGGATTGTAGACACAAAACTCAAATCAAATAATTAAATATCAGATGACTTT
AGGAACATTGTTTGCAAAATTAAACTCATAGA-AACAAGGGGAACCCTCTCAATTTTCTGACAATTAACCTAAAATTTTG
ACTTTGTGTGTGCGGATTATTCTTTCATAACCTCTTGCATCGAGCATTTGTTCTTTCAATTTGCCAGCTAGTATGACATA
TAGCTACGTCCTTGTCAAATGTAACTATATCAACCATGCATTCATGTGCCATAGAGTTCTTGCAGGTATGTACATGCAGC
ATTTTTCAAACTCAAAGTATGA-GATATACTTTCATAAGAAATAAAATGCAGAGAACCGTAACGAGAATATAATCTAGAA
TATATTGTGAAGGGCATTTTGTATTAAGTGCACATCCATGAGTACCGGTACTAATTACT----AA----GTTTGCTGAAG
TCGTCGCTTGCTTTAATCACCAGATGCTAGCACTATCATGCATCTTCTTTTTTTGCGAGTAAACTACCATGCATCCATAT
GATGGTGATAA----TGATACGAACATGCGTCTGACACGTACATATCTTCAGTTTCTATGCAGTTTTTTAAC--------
------------
>chr2D_185
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------------------------GAGCTAAAATATGTCATATAAAAGTATAATAATTTGATTATTTAGTGCAAAAAAAT
TGGTATTATCTCTTTA-CGAATATTTTTTGATTTCTTACACACGTGTCACATAGTAAATTTGGTATT-------TTGAAT
GAACGCGCAATGTTATCCATACATCATCATATTGTAATAATTTGTCTGTT---TTAGAGTGTAAAAGATATATTACTTCT
TGTCCAGACTCCAAAATGCTGAAATTCTGTAC-----ATATTTTGCACTAAGAAATTTAATGGCAATACCGAAATACTCC
GTACAAAGTGCGCAGCCAAAGGTGCTAGAACTGGGACACTGCGCGCCTCTGCCGAGTAACAACAGACTTCTCCTTCTATC
ACATCCCCTAGCTATCATTAAAGGCGTTCAGAAGAGCTCGTCTCCTCTCTCTCCCTCCCTCCGCGTTCTTATCAGTACGT
TGTCCGCGCCTAGGCACCAAAGTCCAAAGCAACAGCCATAGCTCGATCTCGATCCCCGGCGCGACGAAAGAAAAAGAAGC
GGCGGCAGGTCGACAGGTCGATCAACTAAGGTGGATCCCCGGAGGCATGGGAAGAGGCCCCTACCCGCCGACGAGGAGGA
GGAACAGCCGCCACCGCCGCCGTCAGCACCCAAGCACGAGCAGGTGGAGGAGCAGCCGTATCACCACCTCATCGCGCACG
CTCTGCAGCAGCAAGGAGCTGCCAGCGCCGGCGGAAGCCCGGGAGCAGATGTGGCCGACCCTTCCCCGTCACCGGAGGCG
TACGCGCAGTACTACTACTCGGCGCGCGCCGACCACGACGCCACCGCCATGGTCTCCGCTCTGTCCCACGTCATCCGCGC
CACACCGGACCAGCAACAAGCCTACTACCCCGCCGGATCCGCCGCTGTCTCAGGAGAACAGCAGCATCAGCACGATGCGG
CGGCTGCAGCGGCCATCGCTGAGGAACAAGGTAATCAACAATACCTACTAGCATCCATCCATGTATCCAAACGTAGTCTT
CTTTTGTCCGTGTGCACGTCGGATGTCGAGAGCATAGCACGCGCGCCTTCTGCTAGATGAATCGCAGCCATTTGGAAACG
TCGAATCATCCAAACACGTCGATATAACTACTAATTTCCTTGTTTTCTTCATCCTAATATGTGGCGAGCTTAATTTAGTG
GTAAAATGGCTGTATAAACTCTGGAGAGAAGTACAATAATTTTGCCTGTTTCGTGCACGAAGATACGCCAGCAGCGAAGT
GCTTAAATTCAACTCCTCGCCTTATTCAATCCTGCACGAATATTTTATGCGCATACGTACGTGTATAAGTGTATTACGTT
AGCTCTGACGAAACCACAAATTAATTATCAATTGTGTTC-------GGATGTGGCTGCAGGGAGGAAGCGGCACTACAGA
GGGGTGAGGCAGCGGCCATGGGGAAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAAGCGGCTCGTGTGTGGCTCGGCAC
CTTTGACACGGCTGAGGACGCCGCCATCGCCTACGACGAAGCGGCGCTGCGCTTCAAGGGCACCAAGGCCAAGCTCAACT
TCCCCGAGCGCGTCCAGGGACGCACCGACCTCGGCTTCGTCGTCACGCGCGGCATACCCGACAGATTGCAGCAACAACAA
CAGTGCCCCGCCACCGTGGGGGCGCCGGCAATGCGGCCACTGCCGCACCAGCAGCAGACCGTGGTGCCGTACCCTGACCT
CATGCGGTATGCACAGCTGTTGCAGGGCGCTGGCAGTGCCGGGGGCGCCGTCAACCTGCCGTTCGGCGCCATGTCGCCCC
CGTCGATGTCCTCGTCGTCGCCGCACATACTCGACTTCTCGACACAGCAGCTCATCCGAGTGAGCCCGACGTCTCCCGCG
GCGGCTATATCGAGCTCAGGCACAACGGGGCCGTCCACCTCATCGTCCACGACTACGGCATCGTCGCCAGGTGCTGCATG
GCCGTACACTGGGGAGCACAAAAATAATAAAGACTCGTGAGAGATCAGTGGATCGAAGGTGCTTGCGATCCATCGGGACA
TGTCTTAGCAGTAGATGAGGAATACGCATGCATTCATCATGCAATAAGGTGGGTAAGTGTTGGTCAATTGATTTTGCTGG
TGAACATTTCTTTCCTTCTTCTGATCCCCAAATTTGTTCATCTAAATCTCTTGTTTTGTTTATTTTTACTTTAATAATGG
GTGATTTGTTTTTGCGGGTAATGGGTGACTCTTAACTAGCTAGGTACTAGTTGTACTAAATTAGTGACAACTAACAAAGA
ACAGAGGGAGACCTTTGTTCCTTGCT-TAATCGTTTATTGTTTCTCTTCTCTTTTATGAAGTGTACATAAGTCTTAGATG
AAAGTACATCCATTTAGTACCAATACCTTTGGATTGTAGACACAAAACTCAAGTCAAATAGTTAAATATCAGATGACTTT
AGGAACATTGTTTGCAAAATTAAACTCAGAGA-AAAAAGGGGAACCTTCTCAATTTTCTGACAATTAACCTAAAATTTTG
ACTTTGTGTGTGCTGATTATTCTTTTATAACCTCTTGCATTGAGCATTTGTTCTTTCAATTTGCCAGCTAATATGACATA
TAGCTACGTCCTTGTCAAGTGTAACTATATCAACCATGCATTCATGTGCCATAGAGTTCTTGCAGGTATGTACATGCAGC
ATTTTTCAAACTCAAAGTATGA-GATATACTTTCATAAGAAATAAAATGGAAAGAACCGTAACGAGAATATAATCTAGAA
TATATTGTGAAGGGCATTTTGTATTAAGTGCACATCCATGAGTACTGGTACTAATTACTAACCAA----GTTTGCTGAAG
TCATCGCTTGCTTTAATCACCAGATGCTAGCACTATCATGCATCTTTTTTTTTTGCGAGTAAACTACCATGCATCTATAT
GATGGTGATATATAGTGACACGAACATGCATCTGACACGTGCATATCTTCAGTTTCTAGGTAGTTT--------------
------------
>SNPs
----------------S-------S--------------------S-------------S---------S----------
----S----S-----------S----------------------S-----------------SS--------------S-
--S----------------------------------------------------------S------------------
---------------SS---------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------SSSSS-------------------------------------------
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-----------------------------------------------------------------------S--------
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-----------------------------------------------------------------S--------------
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---------S----------------------------------------------------------------------
----------------------------------------------S---------------------------------
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-S-----------------------------------------S------------------------------------
-------S--------------------------------------------------------------S---------
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--------------------------------------------------------------------S-----------
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-------------------------------------------------------S------------------------
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---------------------------------------------------------------S----------------
-------------------------------------------------------------------S------------
-----------------------------------------------------S--------------------------
----------------------------------S---------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------------------S------------------------------
--------------S--------------------------S--------------------------------------
-------------------------------S-------S--------------------S-------------------
--------------S-----------------------------------------------------------------
---------------------S----------S--------------------S-----------------------S--
-------------------------------S------------------------------------------------
----------S-------------------------------------------------------------------S-
---------------S------S---------------------------------------------------------
-----------------------------------------------------------------SSSS-----------
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----------------------------------------------------------S-------S-----SSSSSSSS
SSSSSSSSSSSS
>forward_70
--------------------------------------------------TCTGGTGTAACGAGTAGGCC----------
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>reverse_1816
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-------------------------------------------------------TCCCGACAGATTGCAGCAAC-----
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>forward_1669
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-------------------------------------------------CCAAGAAAGCGGCTCGTGTA-----------
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>reverse_3029
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--------------------------------------------------------------------AGTTTGCTGAAG
TCATCGCT------------------------------------------------------------------------
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------------
