>input_sequence_58146
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-----------------------------ATGGCTGCGTCCGTATGGTTGTTCTTCTCGCTGGCGTCGCTCGGTGCCCTC
CATGTTTCCGCCCTCAGCGTCAGCCTCCTCG------CCAGCCTCGCGCTCTGCCTGCGCCGGCCCAAGGATCTCCGGCG
CAGGTACGGCGCGTGGGCCGTCGTCACCGGCCCGACGTCAGGCATCGGGCGCTCCATGTCCCTGGAGCTCGGTCGGCGTG
GCCTCAACCTCGTCCTCGTTGGCCGTGACCCCGCCAAGCTCCGGGACGTCTCCGAAACCATCTCCAGGGCT--------C
A---CGCCGTGCAGACCAAGACCGTGCTGTTCGATTTCTCCCTCGTCTCCACCGCGCAAGGTGTGAA---CTTAATACGA
CTAGTGC--------------AGCGTGCGTG----TCCTT-------CTG----GTC-ACTGATCGGTCCCGTCGTGTCG
CGTCGATCGATCTTT----GGCAGGGGACGAGGCGATGCGGCGGCTCCGGGAGGCCGTGGCCGGGCTGGACGTAGGGGTG
CTGGTGAACAACGCCGGGGTGGCGAAGCCGGGCGCGGTGTACCTGCACGAGGTGGGCGTGGAGGCGTGGGCGAGGATGAT
ACGGGTGAACGTGCTGGCGCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGGTGCGGCGGGGCAGGGGCGCCGTCG
TGAACATGGGCTCGGGGTCGGCGTCGGTGCTCCCCTCCTTCCCGCTCTACTCCGTCTACGCCGGCACCAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTCGCCGAGTTCTCCAGGAGCCTCG
CCGTGGAGTACGGGAGCTCAGGCATCGACGTGCAGTGCCAGGTACGTAGCCGGCGTGC--CGCTCGCATCCATGGCG---
--------------------TCGTTGTGTCGTGTCAACAGGCTCCCATTTGGTTGTGCCGTGTCTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CAGGCCCCGTTCCTGGTGGAGACGAACATGGTGTCGAG
CGCCGTGAAGGCCAGCTTAATC---TCGCAGTTCGTGCTGACCCCGGACGGGTACGCGCGCGCGGCGGTGCGCTGGATCG
GGCACGGCACGCTCTGCGTGCCCAACGTCGCCCACCGATTGCAGGGGTGGTTCGTCGGCCTCTTCCCAGACTTCGTCACA
GACGCGTACCGCCTGGAGAATAATCTGCGGCAGAGAGCCATCCTTCGGAGGGTCAAGCCGTGGAGGAAATCGCAGGCGAA
CTCTCGTGTTCCTGCCCATAGCAAGGGTGGTGTTGGTGTTCGCTCGGACTAA----------------------------
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-------------
>chr7D_1_TraesCS7D01G221100
GGGCTATCAGTGGCGTTTGGTTCAAACAGTAGGCTAATTTTTTTAACTGACTTTACTTGTGGAATAAAGACTAACTTTAC
GTCATGCCGCTTAAATGAGTGATGAAACGAGTG------------AAATTATTGAAATTAATTTTTTGAAGAGGGAAATG
--TTTTTTATTGAATTAAATCCATTTATTTAAATCAGTGAAATCGGTTTGAAAGTATATTTTTATGAATGAAAACAATTT
TCTGAAATGAGTGAAATGTGCTTTTTCAAGTGAGTGATGAA--------------------------------TAATGAG
TAAAACAGTAAAATTAAAACTAGTTCAAATATATTGGTGATTGATCTTGTTATGAAGATCTTGTTGCTACGAATTCGAAT
ACATATTTCTTTAAACGAAGTTTTTGTTCCAAAAATATTTATCATCCAAAAATTTTGTGTGAAACTAGGGGTGGTGTAGT
TAGCATGCATCCAACCGTTTTTCTCTCCACACACCCGCACACTGGTGAGGTCCATGTTTGGTTGTGTATTGTAAAACAGT
CTTGTTATATCTTAGTTGACTATGACTTGGTTAAGCCTCAACTGTTGCTATATTTGTGAGATCTTACATTGATATTCATG
CATTTTTTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------TTCTTATTACATATTATGTCATTTGACTGACTTAGTCAACTGAGACCAAG
CCACCACCCTAAGGCCCTAGGTACGGCACCGGTAGAATTACGCATTTTTGTTCTC-CTCTGCTTTTGCTCTTACGGCTGC
TCCTCACAGGCTGTTATCACCGTCGGTGTTGCTGCCAGATGTCAATGAGTAAGGACGAGACAAAGCTGTTGGAGGATGGC
CGGCGCGCCGTACCAACTAACACGAGCATGAGCTTTAGGGAATGTTGAGCCGTACGTGGCGT-CCCTTTGTAATCAAACT
CTTCTACCGCGCTACCGGTCATCCGTTTATCATCCCGCCGTCCGCGTCGCATAAATACGAGCGCACGCACAGCTCGTAGC
AGAGCACCAGGAGCCAAACGTGTTGCGACATGGCTGCGTCCGTATGGTTGTTCTTCTCGCTGGCGTCGCTCGGTGCCCTC
CATGTTTCCGCCCTCAGCGTCAGCCTCCTCG------CCAGCCTCGCGCTCTGCCTGCGCCGGCCCAAGGATCTCCGGCG
CAGGTACGGCGCGTGGGCCGTCGTCACCGGCCCGACGTCAGGCATCGGGCGCTCCATGTCCCTGGAGCTCGGTCGGCGTG
GCCTCAACCTCGTCCTCGTTGGCCGTGACCCCGCCAAGCTCCGGGACGTCTCCGAAACCATCTCCAGGGCT--------C
A---CGCCGTGCAGACCAAGACCGTGCTGTTCGATTTCTCCCTCGTCTCCACCGCGCAAGGTGTGAA---CTTAATACGA
CTAGTGC--------------AGCGTGCGTG----TCCTT-------CTG----GTC-ACTGATCGGTCCCGTCGTGTCG
CGTCGATCGATCTTT----GGCAGGGGACGAGGCGATGCGGCGGCTCCGGGAGGCCGTGGCCGGGCTGGACGTAGGGGTG
CTGGTGAACAACGCCGGGGTGGCGAAGCCGGGCGCGGTGTACCTGCACGAGGTGGGCGTGGAGGCGTGGGCGAGGATGAT
ACGGGTGAACGTGCTGGCGCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGGTGCGGCGGGGCAGGGGCGCCGTCG
TGAACATGGGCTCGGGGTCGGCGTCGGTGCTCCCCTCCTTCCCGCTCTACTCCGTCTACGCCGGCACCAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTCGCCGAGTTCTCCAGGAGCCTCG
CCGTGGAGTACGGGAGCTCAGGCATCGACGTGCAGTGCCAGGTACGTAGCCGGCGTGC--CGCTCGCATCCATGGCG---
--------------------TCGTTGTGTCGTGTCAACAGGCTCCCATTTGGTTGTGCCGTGTCTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CAGGCCCCGTTCCTGGTGGAGACGAACATGGTGTCGAG
CGCCGTGAAGGCCAGCTTAATC---TCGCAGTTCGTGCTGACCCCGGACGGGTACGCGCGCGCGGCGGTGCGCTGGATCG
GGCACGGCACGCTCTGCGTGCCCAACGTCGCCCACCGATTGCAGGGGTGGTTCGTCGGCCTCTTCCCAGACTTCGTCACA
GACGCGTACCGCCTGGAGAATAATCTGCGGCAGAGAGCCATCCTTCGGAGGGTCAAGCCGTGGAGGAAATCGCAGGCGAA
CTCTCGTGTTCCTGCCCATAGCAAGGGTGGTGTTGGTGTTCGCTCGGACTAAGGTGGTCCGGCGTTCGTGGTTACTGGAG
CATGTTGGGACGAAGTTGCTTCATGTTTTTTGTGCAACAGTTGGTCACGCAAATGTTAAATAACTGGTTGGGCAACAGTG
TTGAGTAATGGATTTTCTTTTTGCGGGGAAGTAATGGATTTTTTT-AAATAAGTTTTCAACCCGCTTTATAAATAAAGTC
ATCACCGTGTCCATATAACAAGTTCTAGTGCAGCGAAATAAAATAGTCTGCTAGGACAACAACACAAACACGCCAGAAAA
ATATCATAAGGCCAACTCCACCGCACGATCCTAAATCTATACCCATTTTGTCCGGATTTTGTCTGTATGGGGTAGAAACA
GGGAGAACAAACGACGGACAGAGGCCGGACAAACTCGCTGCACCCAACGCTGCTTCTCCATTTTCACCCCATTTCACCAG
CTGTCCGTCCTCGTCATTTCTTCGAACACGTAGCAGGCATAGCGAACTTGACGCCGCCGCGGCCGCTCCTGCTCATGCAC
GCACTCGCTCCCGTCGCGACCGCATGCCCGCCGTCGCGCCCGACGCCTCGCCGTGCTTGTGCCCTCGCTCCTGCCTCGCC
CGCGCGCACGCCTCGCCGCATCTGCCGTGTCCGACCGCGCCCTGCCGTGACCCGCCGCATCTGTCTGGCAGCTCGCCGCT
CCTGCGCCCGCCTCGAGGACCGTGCGCGCCGACGAGTTGGACCGCATGCACGCTGGGCACGCCCCGATGAGCAGGTTGGC
GGAGACGTCGACGAACTCCAACGTGTCCGCGCACGCCGTGCTCGGCGGCAGCTGCCCGAAGAGCTTGTTGTGAAGTTGTC
GTCGGCGAGGACGAGCCTCACCACCGCCTTCCCCACCCCCGGGAACGCGGCGTCGAGCCTGTTCCGGCCCAGGTCGACCT
CGTGGAGGAAGGTGAGCCCGGAGAGGGACGGCACGGTGCCGTTGAGCCAGTTCCCGGACAGCACGAGGCTCTGCAGCGAG
TACATGCGCGCCA
>chr7B_1
GGGCTATCAATGGTGTTTGGCTCAAACAGTAGGC----TTTTTTAAGTGACTTTACTTGTGGAATAAAGACTTAGTTTAC
GTCATGCCGGTTAAATGAGTGATGAAACGAGTGGAATTATTTGTGAAATGATTGAAATTAATTTTTTGAAAGAGGGAACT
GTTTTTTTATTGGGTGAAATCCATTTATTTAAACCAGTGGAATCGGTTTGAAAATATATTTTTATGAACGAAATCAATTT
TCTGAAATGAGTGAAATGTGCTTTTTCAAATGAGTGATGAAATACTTATTTTGAAACGAGTGAAATTGTTTTTTAATGAG
TAAAACAGTAAAATTT-AACTAGTTCAAATATATTGGTGATTGATCTTGTTATGAAGATCTTGTTGCTACGAATTCGAAT
ACATATTTCTTTAAACGAACTTTTTGTTCCAAAAATATATATCATTCAAAATTTTAGTATGAAACTAGGGGTGGTGTAGT
TAGCATGCATCCAACCGTTTTTCTCTCCACACACCCGCACACTGGTGAGGTCCATGTTTGGTTGTGTATTGTAAAATAGT
CTTGTTATATCTCAGTCGACTATGA------TAAGCCTCAACTGTTGCTATATTTGTGAGATCTTACATTGATATTCATG
CGTTTTTTTTTTTTGCGAACACGCAAAAGCTTTGCGCGTCGATGTATTAGAAGAAGAGAAATAGAAGTACAGAGAGTCCG
GCGGCTTGCCGCGGTTACAATCATCCCCACTGTAGCATATGGTGGGCAGCCATTAACACCATGGGGCACCCAACAACGCC
CTACATGCTAGAAGGTCCTACCTCCAGAAGTCCGACAACCCCCTCGCACCAGAAAGTTTCCATAGCTCAACCTCATCACT
GATGCGACGATAAAGCTCTCTAGCAACGACCGCTGACCGCTCGAAGACACGACTATTACGTCCCTCCATAGCATCCAGAT
GATGAGGAGGGCAAGCGAATCAAACCCCTTCCTCCGCTCCTTCTGGATCATCGCACGACTGGCTGGCCACCACTCTATGA
GAGTTGCATCCATGCTGGGCACCAACTGGCCAAGGCCGCACCGTGCGAGGGCAGAGTGCCACACCTCCCTGGCAAACACA
CAGCCCAGTGCCAGGTGGTCTGCAGTCTCAGCCTCCTGCTCGCATAATGGGCACATGACGTGGGACTGGAGGCCGTGTCG
AAGGCGTCTGTCTGCCGTCCAAATCCGACGCCTCATCGCTAGCCAGAAGTGAAGCTTGCACTTGGCCGGGGCCCAAGTCT
TCCAAAGGGCCCGACCGCATGGGAACCTCTCGAAGCCAGCAAAGAACACCTGGTAAGCTGAGCTCGCAGAATATACCTCA
GTCGGCGTCTACTTCCAGATTATGCGATCCGAAATCTCAGGGAGTAGGTGCACCTCAAGAAGCAAGTCCGTGAGCATCAA
GAATTGAGTTAGCACTCTAACCGTCAACACCCTTGTGATGTCCCTGATCCAAGCGCGGTCCGCTAAGGCCTCATGAACTG
TTTGCGTGCGCCGTGCACATGCGTTTTTCTTTCTTATTACATATTATGTCATTTGACTGACTTACTCAACTGAGACCAAG
CCACCACCCTAAGGCCCTAGGTACGGCACCGGTAGAATTACGCATTTTTGTTCTCTCTCTGCTTTTGCTCTTACGGCTGC
TCCTCACAAGCTGTTATCACCGTCGGTGTTGCTGTCAGATGTCAATGAGTAAGGACGAGACAAAGCTGTTGGAGGATGGC
CGGCGCGCCGTACCAACTAACACGAGCATGAGCTTTAGGGAATGTTGAGCCGTACGTGGCGT-CCCTTTGTAATCAAACT
CTTCTACCGC--TACCGGTCATCCGTTTATCATCCCGCCGTCCGCGCCGCATAAATACGAGCGCACGCACAGCTCGTAGC
AGAGCACCAGGAGCAAAACGAGTTGCGACATGGCTGCGTCCGTATGGTTGTTCTTCTCGCTGGCGTCGCTCGGTGCCCTC
CATGTTTCCGCCCTCAGCGTCCGCCTCCTCG------CCAGCCTCGCGCCCTGCCTGCGCGGGCCCAAGGATCTCCGGCG
CAGGTACGGCGCGTGGGCCGTCGTCACCGGCCCGACGTCAGGCATCGGACGCTCTATGTCCCTGGAGCTCGCGCGGCGTG
GCCTGAACCTTGTCCTCGTCGGCCGTGACCCCGCCAAGCTCCGGGATGTCTCCGAGACCATCTCCAGGGCT--------C
A---CGCCGTGCAGACCAAGACCGTGCTGTTCGATTTCTCCCTCGTCTCCACCGCGCAAGGTGTGAAGAACTTAATACGA
GTAGTGC--------------AGCGTGCGTGCGTGTCCTTGTGGTCACTG----TCC-ACTGATCGGTCATGTCCTGTCG
TGTCGACGGTCTTCC-GCATGCAGGGGACGAGGCGATGCGGCGGCTCCGGGAGGCGGTGGCGGGGCTGGACGTAGGGTTG
CTGGTGAACAACGCCGGGGTGGCGAAGCCGGGCGCGGTGTACATGCACGAGGTGGGCGTGGAGGCGTGGGCGAGGATGAT
ACGGGTGAACGTGCTGGCGCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGGTGCGGCGAGGCAGGGGCGCCGTCG
TGAACATGGGCTCGGGGTCGGCGTCGGTGCTCCCCTCCTTCCCGCTCTACGCCGTCTACGCCGGCACCAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTCGCCGACTTCTCCAGGAGCCTGG
CCGTGGAGTACGGGAGCTCAGGCATCGACGTGCAGTGCCAGGTACGTAGCCGGCGTGC--CGCTCGCATCCATGGCG---
--------------------TCGTTGTGTCGTGTCAACAGGCTCCCCTTTGGTTGTGTCGTGTCCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CAGGTCCCGTTCCTTGTGGAGACGAACATGGTGTCGAG
CGCCGTGAAGGCCAGCTTAATC---TCGCAGTTCGTGCTGACCCCGCACGGGTACGCGCGCGCGGCGGTGTGCTGGATCG
GGAACGGCACGCTCTGCGTGCCCAACGTCGCCCATCGATTGCAGGGGTGGTTCGTCGGCCTCTTCCCGGACTTCGCCACG
GACGCGTACCGCCTGGAGAATAATCTGCGGCAGAGAGCCATCCTTCGGAGGGTCAAGCCGTGGAGGAAATCGCAGGCGAG
CTCTCCTGTTCCTGCCCAGGACGAGGTTGGTGTTGGTGTTCGCTCGGATTAAGGTGGTTCGGAGATCGTGGTTACTGGAG
CATGTTGTGACGAAGTTGCTTCAAGTTTTTTGTGCAACAGTTGGTCACGCAAATGTTAAATAAGTGGCTGGGCAAAACTG
TTGAGTAATGGAATT--TTTTGG-GGGGAAGTAATGGATTTTTTTTAAATAAGCTTTCCACCCGCTTTATAAATAAAGCC
AACA-----TCCATATAACAAGTTCAGGTGCAGCGAAATAAAATAGTCTGCTAGGACAACAACACAAACACGCCAAAAAA
ATCATAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------
>chr7A_782
TAAT----------------------------------------------------------------------------
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-----------------------------------------------------GACGAGACAGAGCTGTTGGAGGATGGC
CGGCGCGCCGTACCAAATAACACGAGCATGAGCTTTAGGGAATGTTGAGCCGTACGGGGCGTCCCTTTTGTAATCAAAGT
CTTCTACT--------GGTCATCCGTTTATTATCATCCT---------GCATAAATACGGGCGCACGCAGAGTAG-----
-------CAGGAGCAAAACGAGTTGCGACATGGGTGCGTCCGTATGGTTCTTCTTCTCGCTGGCATCGCTCGGTGCCCTC
CATGTATTCGCCGTCAGTGTCCGCCTCCTCG------CCAGCCTCGCGCCCTGCCTGCGCCGGCCCAAGGATCTCCGGCG
CAGGTACGGCGAGTGGGCCGTCGTCACCGGCCCGACGTCAGGCATCGGACGCTCCATGTCCCTGGAGCTCGCGCGGCGTG
GCCTCAACCTCGTCCTCGTCGGCCGTGACCCCGCCAAGCTCCGGGACGTCTCCGAGACCATCTCCAGGGCT--------C
A---CGCCGTGCAGACCAAGACCGTGCTGTTCGATTTCTCCCTCGTCTCCACCGCGCAAGGTGTGAAGAACTTAATACGA
GTAGTGC--------------AGCGTGCGTGCGTGTCCTT-------CTG----GTT-ACTGATCGATCATGTCCTGTCG
TGTCGATGGATCTTCGACATGCAGGGGACGAGGCGATGCGGCGGCTCCGGGAGGCCGTGGCGGGGCTGGACGTAGGGGTG
CTGGTGAACAACGCCGGGGTGGCGAAGCCGGGCGCGGTGTACATGCACGAGGTGGGCGTGGAGGCGTGGGCGAGGATGAT
ACGGGTGAACGTGCTGGCGCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGGTGCGGCGGGGCAGGGGCGCCGTCG
TGAACATGGGCTCGGGGTCGGCGTCCGTGCTCCCCTCCTTCCCGCTCTACTCCGTCTACGCCGGCACCAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTCGCCGAGTTCTCCAGGAGCCTCG
CCGTGGAGTACGGGAACTCAGGCATCGACGTGCAGTGCCAGGTATGTACTCGGTGCGC-GCGCTCGCATCCATCGTG---
--------------------TCACGACATTATCG---------------TCGTTGTGCCGTGTCTG--------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------CAGGCCCCGTTCCTGGTGGAGACGAACATGGTGTCGAG
CGCCGTGAAGGCCAGCTTAATC---TCGCAGTTCGTGCTGACCCCGGACGGCTACGCGCGCGCGGCGGTGCGCTGGATCG
GGCACGGCACGCTCTGCGTGCCCAACGTCGCCCACCGATTGCAGGGGTGGTTCGTCGGCCTCTTCCCGGACTTCGGCACA
GACGCGTATCGCCTGGAGTATAATCTGCGGCAGAGGGCCATCCTTCGGAGGGTCAAGCCGTGGAGGAAATCGCAGGCGAG
CTCTCCTGTTCCTGCCAAGGACGAGGTTGGTGTTGGTGTTCGGTCGGATTAAGGTGGTTCGGAGTTCGTGGTTACTCGAG
CACGTTGTGACGAAGTTGCTTCATGTTTTTTGTTCAACAGTTGGTCACGCAAATGTTAAATAACTGGTTGGGCAAAACTG
TTAAGTAATGGATTT--TTTTTGCAGGGAAGTAATGCATCTTTTTAAAATAAGGTTTCAACCCGCTTTATAAATAAAGCC
ATCACCATGTCCATATAACAAGTTCAAGTGCAGCCAAATAAAATAGTCTGCTAGAACAACAACACAAACACGCCAAAAAA
ATCATAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr5D_996
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------------------------GCGACATGGCCGTGCCGGT---GTGGTTCTTCTCGCTGGCCTCGCTCGGCGCTCTC
CATGCCTTTGCCATCAGCTTCCGCCTCATCG------CCTACTTGTCGGTGTTCCCGCGCCGGCCCATTGACCTCCGCCG
CCGGTACGGCGCCTGGGCTATCGTCACCGGCCCAACTTCCGGCATCGGGCGCTCCATGGCCCTGGAGCTCGCGGAGAGGG
GCCTCAACCTCGTCCTCGTCGGCCGCGACCCCGCCAAGCTCGGGGACGTCTCCGAGACGATCTCCAGGGGACCAGGGCGC
ACGCCGCCGTGCAGACCAAGACCGTGCTGTTCGATTTCTCCCCTGTCTCCACCGCGCAAGGTGTAAAAGTTG--ATCGCA
GGAGCATCATACA-------TTGCGTACGTA----TCCGT-------CTGAGCAGTG-ACTGACCGGTCCTGTCGTGTCG
TGTGGATCGATCTTGGGCATGCAGGCGACGAGGCGATGCGGCGGCTCCGGGAAGCCGTGGCGGGGCTGGACGTAGGGATG
CTGGTGAACAACGCGGGCGTGGCGAAGCCGGGCGCGGTGTACCTCCACGAGGTGGACGTGGAGGCGTGGGTGAGGATGAT
ACGGGTGAACGCGCTGGCTCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGCTGCGGCGAGGGAGGGGCGCCATCG
TGAACATCGGCTCCGGGTCATCGTTCGCCCTCCCGTCCTACCCCCTCTACTCCGTCTACGTCGCCACCAAACGGTAACGA
CGACGCGCAGATCTCTCGCATGTTATTCTTGCATTGAAAGACATGATCTGA-----------------------------
------------------------------TCTGTTCTTGTGGAGCTTCAGGTACGTTCTTGAGTTCTCCAGGAGCCTCT
CCGTGGAGTACAAGAGCAGTGGAATCGATGTGCAATGTCAGGTACCAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCACTCGCGTACATGCTTGAGCAGC
TGATGTGTATATTGTATACACATTCGTCCTCCTC----------------------------------------------
----AAATTAACCAAGCGTGATTGATTGCCTATA--ATCCACCAGGTCCCGTTGCTGGTGGAGACGAACATGGTGTCGAG
CGC------GGCCAGGCTCATC---CGGCAGTTCGTGCTGACCCCGGACGCCTACGCGCGCGCGGCGGTAAGCTGGATCG
GGCACGGAACGCTGTGTGTGCCCAACGCCGTCCACCGCCTCCAGGGATGGTACATCTGCTTCT-----------------
--------------------------------------------------------------------------------
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>chr7D_1021
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-------------------------------------------------GTTCGTCTCGCTCGCCATCCTCGGCGCCCTC
TACGTCGCAGCCGTCGCGTACCGCCTCCTCCACACGTCCGGCCTCGCGCTCTGCCTGCGCGGGCCCAAGGACCTACGCCG
CCGCTACGGGGCGTGGGCCGTCGTCACCGGCCCGACGTCCGGCATCGGCCGCTCCATGGCCCTCGAGCTCGCGCGGCGCG
GCCTCAACCTCGTCCTTGTCGGCCGCGACCCCGGCGCGCTCCAGGACATCGCCGGAACCGCCTCCGACACC--------C
A---CGGCGTGCTGACCAAGACCGTGCAGTTCGACTTCTCGCTCGTCTCCACGCCTCAAGGTGAAAGAAAGCACCACGCA
CGCAGCACTCCTCAAGGAACTACCGTACGTGGTACTGGTACGTGCTG---------T-ACTGATCGACCGTGT-------
------------TTT----GGCAGGGGAGGAGGCGATGGGGCGGCTCCGGCAGGCGGTGGAGCGGCTGGAGGTGGGCGTG
CTGGTGAACAACGCCGGCGTGGCGACGCCGCATGCGACGTACCTGCACGAGGCCGACGCAGAGGCGTGGGTGAGAATGAT
ACGGGTGAACCTGTGGGCCGTGACGGAGGTGACGGCGGCCGTGCTTCCCGGCATGGTGGAGCGCGGGAGGGGCGCCGTCG
TCAACATCGGCTCAGGCGCGGCGGAGGCGCTGCCCTCCTACCCGCTCTACTCCGTCTACGCCGCCACCAAGCGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTTTCCCAGTTCTCCCGCAGCCTCT
GCGTTGAGTACAGGGGCAAAGGAATCGACGTGCAGTGCCAGG--------------------------------------
--------------------------------------------------------------------------------
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>chr5A_1021
--------------------------------------------------------------------------------
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-------------------------------------------------GTTCTTCTCGCTGGCCTCGCTTGGCGCTCTC
CATGTCGTTGCCATCAGCTTCCGCCTCATCG------CCTACTTCTCGGTCTTCCACCGCCGGCCCATTGACCTGCGCCG
CCGGTACGGTGCCTGGGCCGTCGTCACCGGCCCAACGTCCGGCATCGGGCGCTCCATGGCCCTGGAGCTCGCGGAGAGGG
GCCTCAACCTCGTCCTCGTCGGCCGCGACCCGCCCAAGCTCGGGGACATCTCCGAGAGGATCTCCAGGGCT--------C
ACGCCGCCGTGCAGACCAAGACCGTGCTGTTCGATTTCTCCCTCGTCTCCACCGCGCAAGGTGTAAAGGTTG--ATCGTA
G---------ACA-------TAGCGTACGTA----TGCGT-------CTGAGCACCG-ACTGCCTGA-CCGGTCGTGTCG
TGTCGATCGATCTTGGGCATGCAGGCGACGAGGCGATGCGGCGGCTCCGGGAAGCCGTGGCGGGGCTGGACGTAGGGGTG
CTGGTGAACAACGCGGGCGTGGCGAAGCCGGGCGCGGTGTACCTCCACGAGGTGGACGTGGAGGCGTGGGTGAGGATGAT
ACGGGTGAACGCGCTGGCCCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGCTGCGGCGAGGGAGGGGCGCCGTCG
TGAACATCGGCCCCGGGTCATCGTTCGGCCTCCCGTCCTACCCCCTCTACTCCGTCTACGTCGCCACCAAGCGGTAACGA
CGACGCGCACATCTTTCGCGTGTTATTCTTGAATTGAAACACATGATCTGTTCCTTTCATCAATCAAAATAGACTAAAAA
ATCAAAAAAGAAAAGAAGAAGAATACATGCTCTGTTCTTGCCGACCTGCAGGTACGTTCTTGAGTTCTCCAGGAGCCTCT
CCGTGGAGTACAAGAGCAGATGAATCGATGTGCAATGTCAGGTATCCCCATAATCACTCGTTTGCGTTGTAGAAATGTGG
GGTCGGAGCTCGTTGCATGTTCAGAATGTTG--------------GGTATGGTTGTGACCTGATCTTGTGCTTATGAGGT
TGCATGCTCTATGACTAAGTAGTTCGCATGTGGTTAGTTTATAACGGTCTTTTTTCGGTTTTCCATTAATTAAATGGGCA
ACTCTTTCATTAATCGATGAGGTAAATCTTTTATCTCCATTTGAAAAAGAAAAAATCACTCGCGTACATAGGTGAGCAGC
TGATGTATATAA-----ACACATTCGTCCTCCTTAGATCTATTCATCTTTAATCAAGATAGTGCATCGAACACTAGAAAT
AATAAAATTAACCATGCTTGATTGATAGCCTATATAATCCACCAGGTCCCGTTCCTGGTGGAGACGAACATGGTGTCGAG
CGC------GGCCAGGCTCGTC---TGGCAGCTCGTGCTGACCCCGAACGCCTACGCGCGCGCGGCGGTAAGCTGGATTG
GGCACGGATCGCTGTGTATGCCCAACGCCGTCCACCGCCTCCAGGGATGGT-----------------------------
--------------------------------------------------------------------------------
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>chr5B_1021
--------------------------------------------------------------------------------
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-------------------------------------------------GTTCTTCTCGTTGGCCTTGCTTGGCGCTCTC
CATGTCGTTGCCATCAGCTTCCGCCTCATCG------CCTACTTCTCGGTCTTCCTCCGCAGGCCCATTGACCTCCGCCA
CCGGTACGGCGCCTGGGCTATCGTCACCGGCCCAACGTCCGGCATCGGGCGCTCCATGGCCCTGGAGCTCGCGGAGAGGG
GCCTCAACCTCGTCCTCGTCGGCCGCGACCCCGCCAAGCTCAGGGACATCTCCGAGACGATCTCCAGGGCT--------C
ACGCCGCCGTGCAGATCAAGACCGTGCTGTTCGATTTCTCCCTCGTCTCCACCGCGCAAGGTGTGTAAAAGTTAATCGCA
GGAGCATCATACA-------TAGCGTACGTA----TCCGT-------CTGAGCAGAGCACTGACTGA-ACGGTCCTCACG
TGTCGATCGACCTTGGGCATGCAGGCGACGAGGCGATGCGGCGGCTCCGGGAAGCCGTGGCGGGGCTGGACGTAGGGGTG
CTGGTGAACAACGCGGGCGTGGCGAAGCCGGGCGCGGTGTACCTCCACGAGGTGGACGCGGAGGCCTGGGTGAGGATGAT
ACGGGTGAACGCGCTGGCCCTGACGGAGGTGACGGCGGCGGTGCTGCCGGGGATGCTGCGGCGAGGGAGGGGCGCCATCG
TGAACATCGGCTCTGGCTCATCGTTCGCCCTCCCGTCCTACCCCCTCTACTCCGTCTACGTAGCCACGAAGCGGTA----
--------------------------------------------------------------------------------
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>chr7D_1362
--------------------------------------------------------------------------------
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------------------------GTGTGTG----TCGTT-------CAG----ATC-ACTGATCAGTCTTCTCAT----
-GTCGTTCAATGTTC----TGCAGGTGAAGAGGCGATGAGTCGCTTCCGGGAGGCCGTGGCGGGACTGGATGTAGGGGTG
CTGGTGAACAACTCCGGGGTGGCGAAGCCCGGCGCGGTGTACCTCCACGAGGTGGACGTGGAAGCGTGGGTGAGGATGAT
ATGTGTGAACGTACTAGCGCTGACGGAGGTGACGGCCGAGGTGCTGCCAGGGATGGTGCGCCGGGGCAGGGGTGCAGTCG
TGAACATCGGCTCGGGCTCAGGATCTGTCCTCCCTTCCCACCCTCTGTACTCTGTCTACGTCGCCACCAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTCGCAGAGCTCTCCAGGAGCCTCT
CCGTGGAGTACGAGAGTGCATGCATCGATGTGCAATGTTAGGTACGTAATCGGTGTGTGGCGCTCACATCCATCGTG---
--------------------TCACCAGATTA--------------CCTTTGGTTGTGTCGTGTTTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CAGATCCCATTCGTGGTGGAGACGAAAATGGTGTTGAG
CGCCGTGAAGAACAGCTTCTTTGTTCGTCCATGGGTGCTGAGCCCGGACGCCTACGCGCGCGCGGCGGTGCGCTGGATCG
GGCACGGGACGCTGTGTATCCCTAACTTCGCCCACCGCCTCCAGTGGTGGTTCACCTGTCTCTTCCCGGACTCCTTCAAA
GACATGAATCTCCTGAAGCGGAATTTGCAGCACAGAGCCATCTTTAGGAGGATCAAGCCGTTGAGGGAAACTCGGGCGAA
CTC-----------------------------------------------------------------------------
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>chr7D_1404
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--TCGTTCGATCTTC----TGCAGGCGACGAGGCGATGAGTCGCCTCCGGGAGGCCGTGGCGGGACTGAATGTAGGGGTG
CTGGTGAACAACGCTGGGGTGGCGAAGCCGGGCGCGGTGTACCTCCACGAGGTGGACGTGGAAGCGTGGGTGAGGATGAT
ACGCGTGAACGTACTGGCGCTAACGGAGGTGACAGCCGAGGTGCTGCCAGGGATGGTGCGCCGGGGCAGGGGTGCAGTGG
TAAACATCGGCTCGGGCTCAGGATCGGTCCTTCCCTCCCACCCTCTCTACTCTGTCTACGTCGCCACCAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACGTCGCGGAGTTCTCCAAGAGTCTCT
CCGTGGAGTACCAGAGCGCATGCATCGATGTGCAATGCCAGGTACGTAGTCAGTGTGTGGCGCTCACATCCATCATG---
--------------------TCACCAGATTA--------------CCTTTGGTTTTGTCGTGTTTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CAGATCCCATTCATTGTGGAGACAAACATGGTGTCGAG
CGCCGTGAAGAACAGCTTCTTTCTTCGCCCATGGGTGCTGAGCCCGGACGCCTACGCGCGCGCGGCGGTGCGCTGGATCG
GGCACGGGACGCTGTGCATACCCAACTTCGCCCACCGCCTCCAGTGGTGGTTCACCTGTCTCTTCCCGGACTCCTTCAAA
GACATGAACCTCCTGAAGCGGAATTTGCAGCACAGAGACATCTTTAGGAGGATCAAACCGTTGAGGGAAACGCGGGCGAA
CTC-----------------------------------------------------------------------------
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>chr7A_1404
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--TCGTTCGATCTTC----TGCAGGCGACGAGGCGATGAGTCGCCTCCGGGAGGCCATCGCGGGACTGAATGTAGGGATG
CTGGTGAACAACGCCGGGGTGGCGAAGCCGGGCGCGGTGTACCTCCACGAGGTGGACGTGGAAGCGTGGGTGAGGATGAT
ACGCGTGAACGTACTGGCGCTAACGGAGGTGACAGCGGAGGTGCTGCCAGGGATGGTGCGCCGGGGCAGGGGTGCAGTCG
TGAACATCGGCTCGGGCTCAGGATCAGTCCTTCCCTCCCACCCTCTTTACTCTGTCTACGTCGCCACTAAACGGT-----
--------------------------------------------------------------------------------
-----------------------------------------------------ACATTGCAGAGTTCTCCAGGAGCCTCT
CCGTGGAGTACCAGAGCGCAGGCATCGATGTGCAATGTCAGGTACGTAATCAGTGCGTGGCGCTCACATCCATCGTG---
--------------------TCACCAGATTA--------------CCTTTGGTAGTGTCATGTTTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------CAGATCCCATTCGTGGTGGAGACGAACATGGTGTCGAG
TGCCGTGAAGAACAGCTTCTTTGTTCGGCCGTGGGTGCTTAGCCCGGACACCTACGCACGAGCGGCAGTGCGCTGGATCG
GGCACGGGACGCTGTGCATCCCCAACTTCGCGCACCGCCTCCAGTGGTGGTTCACCTGTCTCTTCCCGGACTCCTTCAAA
GACATGAACCTCCTGAAGCGGAATTTGCAGCACAGAGCCATCTTTAGGAGGATCAAGCCGTTGAGGGAAACGCGGGCGAA
CTC-----------------------------------------------------------------------------
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>SNPs
---------S---S------S-------------SSSS--------S-------------------------S-S-----
---------S---------------------------------------S--------------------SSS--S--SS
------------SS-S-----------------S-----S-------------S--------------S----S------
-----------------------------S--------------------------------------------------
---------------SS---------------------------------------------------------------
-------------------S------------------S------S-----S---S--S---------------------
----------------------------------------------------------------------------S---
------------S---S--------SSSSSS-------------------------------------------------
-S------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------S-------------------------S---------------------------------------------
--------------------------------------------------------------------------------
----------SS----------------------------------S---------------------------------
--------------S-----S-----------------------------------------------------------
---------------------S----------------------------------------------------------
-----------------------------------------------------------------------SS-------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
S------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
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----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
-----S------------SSS-S---S---------------------S---------S---S-----------------
-------S-------------------------------------------------------------------S-S--
---------------SS------------------------------------S------------------------S-
------S------------------S-------------------------------------------------S----
--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_1689
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---------------------------------------------------------------------CTTACGGCTGC
TCCTCACAG-----------------------------------------------------------------------
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>reverse_3999
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------------------------------------------------------------------------------CA
GGGAGAACAAACGACGGA--------------------------------------------------------------
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-------------
