>input_sequence_58089
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----------------------------------------ATGCCGCGGCAGCGACGCACAGAGACACTTCCCCGCGGCC
GCGGGGGCAAGAAGCTGAAGGCGGCCGGAGATTTATTTATTCCTACGAAGCCTCCGTCGGTGTACATGGTGGTAGGCCAT
GATGTCACTCGCCCTGCCTACTCCGTAATTAAGGTGAACACCTTCCCTGACGGTGGCAGCGGCGGCGACACTCCGATACC
TATTCCAGGACATCTCGCCCGCCTTGAGGCCAAACACTGCATGTCTTTCGTCCCCGTGCGGTCGAGGCACGGCTCGTGGA
TCGTCGGCGTCGGTGGCAATTCACCAATTGATTATGGCCCCGAGACCATCGTCTTCGACACCAGTACACACCAGGTGATC
CCGGGACCGAAGCTTGTGTCGACTAAGCTCCGCCCGATCCTGCTACCGGTCGGCGACAAGATATATGCCTTGACACGTCA
ACCTGCCATTAAGGGGGGTGTTAATTTCGTGCCCTGGTTCGAGGTGCTCGATCTCTCCCAAGCTCGAGTGGTCAGTGGCC
GTCTCGTGGACTGCAAATGGGAGCAACTACCCCGGCCGCCCTGCTTCCCCTGGGAACTCTCCCCAAGGCAGTACATCTTC
CCACCGGTGGTCAGGGTTAAGTCTTATGTAGCTGTGAGCTCCTACATTCTGGTGTCGATGGATGGACAGGCAGGCACACA
TATCTTCAACTTGAAGACAGAGCAATGGTCGAAATTGGATGACAATGTTCTGCCATTCACTGGAGGCGCCGTACCACATG
GCCCCCTCTTCCTTGGCTTTTCAAGCGCTGCCAAAAAGATCACTGCTTACAGCATCACAGTCTGTGCCGCGGTGTCACCA
AGCCCAAGCATCACAGCAGGGTGCCCATCCTTATCAATTGTTGAGTTCCCGATAGTTGATGAGGCAGAGGAGGAGGTCGT
TAGCCGTGGCAAATTTGTTTCCCTTGGTAACCATGGCTTCTGTTCGTTTATGTGTCGCAACGATGACCTTATGCTAGGTA
CTCTTGAGCATACACAGGAACTTATCACCATGAGAGCATACACAACAGAGGACCACCACCTCTCACAAGACCACCCCAAG
TCTATTTGTCACATAGTGATCTCCAATCAAGTGGAACAGGTTTACAGCATCCGCGATTCACTCCGGGGACTTACTTGGCC
ATCCCTGGTAGATGTGATATCCTTATGA----------------------------------------------------
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>chr3B_1_TraesCS3B01G274400
AACCATTTACGGTTTGTTTTTTCTTCTGGTTTGTTGTCTCCTTTTCTTTTAAATTTTTGCAAAAATCTTTCAAATTTTTG
AACATTTTTTGAAATCAACATTTTTTTACACATTCACAAACTTTTTTAAAACCTTGAACATTTTTTGAATTCGTTATTTT
ATTTATATATTCGCGAATATTTTTTGAATTTGTGAACATTTCTTGAAACTCGACAACATTTTTTGAATCGACCAACATTT
TTTAATATTCATGAACATTGTTTTGTCTGATGTACATTTTATGAAATGCATGAACATTTTTTGAATCAGCGAACATTTTT
GAACCTATAAAGTTTAAAGGCAATTTGGAAACAATTTCTGAAATTTGCAAGCATTTTTTTCTGAATATTTTAAAAAAATC
ATGAACGTTATTGGAATTTGGGAGAGTTTTGTTCAAAGGCTTGACATTTCTTGATTAAGTGAACATTGTTCAAAATTGTG
AACATTTTTTGAATATGCAAACATTTTCTCAAAACCACGAATTATTTTTACTGCACGAAAATTTAATGATTTCTGGAACA
TTTTTTCAAAATAATGGACATTTTTCTTCTGAATTCACGATCATTTTATGATTTCTTGAATATTGATTTTGAAAATTAGA
AAATATTCCGAAATATGGAACTTTTTGAAACCCTGAATTATTTTAAGAAAGCAAAAATCAGAAAAGAAAAAGACCAACAA
AAAACGAAATAAACAGGGGGCGTGCCGTCTCGCAACGAGCGAGATACAGCAGAAGCGCCCCCAGACGCCCGCGTGCCGTG
GGCCGAGCACTGTCCGTTTAGCGGTCCCGCGAAGTATAGGCCTGTTGGCCAGCTATAAATCCCGTTGTCTCTGTCTCATG
AAAAAAAGCTATCGTTTCCCCGTCTCCAACCAGCCCCGCCACCCCAAACCCTAGGTCGCCGCCGCAATCCCTCTGCAAAT
CGATCTTCCGCCGCTGTTGCGCCTAGTTCGGCGCGCGGAGATGCCGCGGCAGCGACGCACAGAGACACTTCCCCGCGGCC
GCGGGGGCAAGAAGCTGAAGGCGGCCGGAGATTTATTTATTCCTACGAAGCCTCCGTCGGTGTACATGGTGGTAGGCCAT
GATGTCACTCGCCCTGCCTACTCCGTAATTAAGGTGAACACCTTCCCTGACGGTGGCAGCGGCGGCGACACTCCGATACC
TATTCCAGGACATCTCGCCCGCCTTGAGGCCAAACACTGCATGTCTTTCGTCCCCGTGCGGTCGAGGCACGGCTCGTGGA
TCGTCGGCGTCGGTGGCAATTCACCAATTGATTATGGCCCCGAGACCATCGTCTTCGACACCAGTACACACCAGGTGATC
CCGGGACCGAAGCTTGTGTCGACTAAGCTCCGCCCGATCCTGCTACCGGTCGGCGACAAGATATATGCCTTGACACGTCA
ACCTGCCATTAAGGGGGGTGTTAATTTCGTGCCCTGGTTCGAGGTGCTCGATCTCTCCCAAGCTCGAGTGGTCAGTGGCC
GTCTCGTGGACTGCAAATGGGAGCAACTACCCCGGCCGCCCTGCTTCCCCTGGGAACTCTCCCCAAGGCAGTACATCTTC
CCACCGGTGGTCAGGGTTAAGTCTTATGTAGCTGTGAGCTCCTACATTCTGGTGTCGATGGATGGACAGGCAGGCACACA
TATCTTCAACTTGAAGACAGAGCAATGGTCGAAATTGGATGACAATGTTCTGCCATTCACTGGAGGCGCCGTACCACATG
GCCCCCTCTTCCTTGGCTTTTCAAGCGCTGCCAAAAAGATCACTGCTTACAGCATCACAGTCTGTGCCGCGGTGTCACCA
AGCCCAAGCATCACAGCAGGGTGCCCATCCTTATCAATTGTTGAGTTCCCGATAGTTGATGAGGCAGAGGAGGAGGTCGT
TAGCCGTGGCAAATTTGTTTCCCTTGGTAACCATGGCTTCTGTTCGTTTATGTGTCGCAACGATGACCTTATGCTAGGTA
CTCTTGAGCATACACAGGAACTTATCACCATGAGAGCATACACAACAGAGGACCACCACCTCTCACAAGACCACCCCAAG
TCTATTTGTCACATAGTGATCTCCAATCAAGTGGAACAGGTTTACAGCATCCGCGATTCACTCCGGGGACTTACTTGGCC
ATCCCTGGTAGATGTGATATCCTTATGA--------GTAAGCCCCTTCAGCACATTTACTTTCCAGTACTTCACCACATT
GCTTACTTA---AATTC-ATAATTCTGATTCAGTTAAGAGGATCTATTTCTTTCTTCAAATATTTCACACACTGTTAGAT
TTTGGATTTCATGATACTCTCTCATACCTCCTATTATTTCCAGCCACAGGACACAACAACTTTAAGATGGGTTTTTGGCC
TATCCTCCCAATATTGATCAACATAGTGAAATTACTGCTGCAATATATATGTTATTACAATTCTTGGCTGGGGGTAGATG
GATGGTCAAATGTCATGGGGGCTTTTACCGTCAGTAACCTCCATTCACTAGATAGACCTTATTAATACTAAAGGCATAGC
TAGTGTTGAAAGCTCCCACACAAGGTGTGGTCTGGGGGAGGTAATTTCTTGACAACCTTACCCTTGCACAATAATTCTGC
AAGGAGGCCAGTTTGAACCCAGAACCTTCAGGCCGCAAGTGGAGAGACTCTACCACCGCACCAGGCCTGCCCTTCTAGAT
AGACCTTAATACTATAGGCAGATATTATTACAGGTTCTATAATAAGCTAACCTAAGTGAATTAGAGCTATTCTCTTTGTT
AGTTTTGTTTTTTGGCTTTGACTTTTGCTGGCCCCATTAAGGGATTTAAAACTGAATTTGTATATCCACTAGGGAGCTAA
AGCATATAAAAGGCTTGTAGAAGGACCAAAGTTACAAAAAGTGACTCTAAAAGAGCCCATCCCTGCAGCTTCAGGAAACA
ATTGATTTTTCATTAACCTTTATCCCCCAATTCTTCGCAATAAACAACAACAACGTCCCAAACTTGTTGGGGTAGGCTAG
AGCTGAAACCCATAAGATCTCGAAACCAACTAATGGTTCTGGCACGTGGATAGCTAACTTCCACGCATCCCTGTCCATGG
CTAGTTCTTTAGTGATATTTTTCAGTCCTTAAGATTTCTCTTTACGGACTCCTCCCATGGCAAGTTTTGGTCTATCCCGA
>chr3D_1084
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-------------------------------------------TACGGAGCCTCCGTTGGTGTACCTGGTGGTCGGCCAT
GACGTCACTCGCCCCGCCTACTCCATAGTCAAGGTGAACCCCTTCTTCCCTCGCCGCCGCGCC---------CCGGTACC
GATCCCAGGACATCTCGCACGCCTTGAGTCCAAGCACTGCATGTCCTTCGTCGCCGTGCGGTCGAGGCACGGCCCGTGGA
TCGTCGGCGTCGGCGGCAACGCACCCATTGACTATGGCCCCGAGACCATTGTCTTCGACACCAGGACGCACCAGGTGATC
CCGGGACCGAAGCTCTTGTCGACCAAGTTCCGGCCCATCCTGCTACCGGTCGGCGAGAAGATCTATGCCCTGACACGTGA
TCCTGCCATCAAGGGGGAGATTAATTTCGTGCCCTGGTTCGAGGTCCTCGACCTCTCCCAGGCGCGAGTGGTCAGTGGCC
GTCTCGTGGACTGCAAATGGGAGCAACTGCCCCGGCCGCCCTGCTTCCCCTGGGAGCTCTCCCCAAGGCACTACATCTTC
CCGCCGGTGGTCTGGGTCAGGTCCTTTGCAGCCGTGAGCTCCTGCATTCTGGTGTCGACGGATGAGCAGAAGGGCACGCA
CATGTTCAACTTGGAGACAGAGCAATGGGCGAAACTGGATGACAAGGATCTGCCATTCACCGGAGGCGCCGCCCCTCATG
GCCCCCTCTTCCTTGGCTTTTCAACTGCCGCCAAAAAGATCACCGCTTATAAGATCACAGTCTGCGCCGCCGACTCACCA
AGCCCAAGCATCACAGCAGGGTGCCCATCCTTGTCAATCGTTGAGTTCCCGATGGTGGATGAGGCAGGGGAGGAGGTCGT
TAGCAATGGCAAATTTGTTTCCCTCGGTAACCATGGCTTCTGTTCGTTTAGATGTCGCACCGATGACCTTGTGCTGGGTA
CTCTTGAGCATACACGGGAACTTGTCACCATGAGAACATACGGAACAGAGGACC------TCTCACAAGACCACCTCAAG
TCTATTCGCCATGTAGTGATCTCCAACCAATTGGAACAGGTTTACAGCGTCCGCGATTCACTCCGGGGACTTTCTTGGCC
ATCCTTGGTAGATGTGATATCCCTGTGATGTAATGAGTAAGCCCCTTTGGCA-----------CAGTACTTCACCACATT
GCTTACTTTATTAATTCAATAATTGTGATTCAGTTAGAGAATCT------------------------------------
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>chr3B_1090
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-------------------------------------------------GCCTCCGTCGGTGTACCTGGTGGTCGGCCAT
GACGTCACTCGCCCCGCCTACTCCATAGTCAAGGTGAACCCCTTCTTCCCTCGCCGCCGCGCC---------CCAATACC
GATCCCAGGACATCTCGTCCGCCTTGAGTCCAAGCACTGCATGTCCTTCGTCGCCGTGCGGTCGAGGCACGGCCCGTGGA
TCGTCGGCGTCGGCGGCAACGCACCCATTGACTACGGCCCCGAGACCATCGTCTTCGACACCAGGACGCACCAGGTGATC
CCGGGACCGAAGCTCGTGTCGACCAAGCTCTGCCCGATCCTGCTACCGGTCGGCGACAGGATCTATGCCCTGACACGTTA
CCCTGCCATGAAGGGGGGTATCAATTTCGTGCCTTGGTTCCAGGTGCTCGATCTCTCCCAGGCGCGAGTGGTCAGTGGCC
GTCTCGTGGACTGCAAATGGGAGCAGCTGCCCCGGCCGCCCTGCTTCCCCTGGGAGCTCTCCCCAAGGCACTACATCTTC
CCGCCGATGGTCAGGGTCAGGTCCTTTGTATCCGTGAGCTCCTGCATTCTGGTGTCGATGGATGAACAGAAGGGCACGCA
CATGTTCAACTTGGAGACACAGCAATGGTCGAAACTGGACGACAAGAATCTGCCATTCACCGGAGGCGCCGTCCCTCATG
GCCCCCTGTTCCTTGGCTTTTCAACTGCCGCCAAAAGGATCGCCGCTTACAACATCACAGTCTGCGCCACCGACTCACCA
AGCCCAAGCATCACAGCAGGGTCCCTATCCTTGTCAATTACTGAGTTCCCGGTGGTGGATGAGGCAGGGGAGGAGGTCGT
TAGCAATGGCAAATTTGTTTCCCTCGGGAACCATGGCTTCTGTTCGTTTAGATGTCGCACCGATGACCTTGTGCTCGGTA
CTCTTGAGCATACACGGGAACTTGTCACCATGAGAGCATACGCAACAGAGGAACAC---CTCTCACAAGATCACCTCAAG
TCTGTTCGCAACGTAGTGATCTCCAGCCAAATGGAACAGGTTTACAGCGTCCGCGATTCACTTCGGGGACTTTCTTGGCC
ATCCTTGGTAGATGTGATATCCCTGTGATGTAATGAGTAAGCCCCTTTGGCA-----------CAGTACTTCACCACATT
GCTTACTTTATTAATTC-ATAATTGTGATTCAGTTAGAGAATCT------------------------------------
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>chr3A_1553
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--------------------------------CGGCCGCCCTGCTTCCCCTGGGAGCTCTTCCTAAGGCACTACATCTTC
CCGCCGGTGGTCAGGGTGAGGTCCTTCGTAACTGTGAGCTCCTGCATTCTGGTGTTGACGGATGAGCAAAAGGGCACGCA
CATGTTTAACTTGGAGACAGAGCAATGGTCGAAACTGGATGACAAGGATCTACCATTCACCGGAGGCGCCGTCCCTCATG
GCCCCCTCTTCCTTGGCTTTTCAACTGCCGCCAAAAAGATTGTCGCTTACAACATCACAGTGTGCGCCCCCGCCTCACCA
AGCCCAAGCATCACAACAGGGTCCCCATCCTTGTCAATTACTGAGTTCCCGATGGTGAATGAGGCAGGGGAGGTGGTCAT
TAGCTGTGGAAAATTTGTTTCCCTCGGTAACCATGGCTTCTGCTCGTTTAGATGTCGCACCTATGACCTTGTGCCGGGTA
CTCTTGAGCATACACGGGAACTTGTCACCATGAGATCATACGCAACAGAGGAATAC---CTCTCACAAG-----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------------S-------S------
--S-----------S---------S--S-S---------S-----SSSSSSS-SS--S---S-SSSSSSSSS--------
S--S------------------------S----S-----------S------S--------------------S------
-------------S-----SS----S-----S--------------------------------S--S------------
--------------S--------S--------------------------------------S------S--------S-
S--------S---------S----------------------------------------S--S----------------
----------------------------S--------------------------S--------------S---------
--S--------------S-S---S-S-----------------S--------------------S----SSS-----S--
S--S---------S--------------------S----------S-S------------S-----------S--S----
------------------------SS--S--------------S-------S------------S-----S-SS------
--------------------------------S--------------------S--S----------S------------
----S-------------------S-------------------------SS-------S----------S----S----
---------------S-------S-----------------S--------------SSS----------------S----
------S-S---S-------------S---S-----------------S-----------------------S-------
----S-----------------S-S----------------------SS---SSSSSSSSSSS-----------------
--------S---------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_962
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--------------------------------------------------------------CGCAATCCCTCTGCAAAT
CG------------------------------------------------------------------------------
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>reverse_2816
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---------------CTTTGACTTTTGCTGGCCCC---------------------------------------------
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