>input_sequence_58084
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--CCGTAGGAG-----GAAAGGAAACGCTCCCGCTCTCGCCCGTGAAAACCA-CCGCCCGAAGATCTTCCCCCGGAGCGC
CGGAGATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGG
CGCAAGCTCTCCGTCGCGTCCAAGTCCGACGCGGCGGCGGCCAGCACGCCCGCCGTGGCCACGGTCACCGCCGGCGGCAA
CGGCGAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGTCGGCGG---CGTCGG
GGCCGCCGCCCAAGGGCCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAG
CACCAGGCGTTCGCGGCGCTGCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTG
CGACGTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGC---------AAGCACAAGGACAACGCCGCCT
TCTGCTACTGCAGCGCCGAGTTCGCCATCGCCGCCG---CCGACGTCGGCACCCCCAACAACTCGCTCTGCAGATAATAA
GCCCGGC-----CCGGCCGGCCGCCGGAGCCC-GTCGTCACTCGCCGGCCACCATTAGCAGCAGTACCTGACCACCATCC
TGTCTGTCCCACGAAAAATGCT-CCTTTTTTTCCCG---TTCTTCTTCATCTTCTTCGGTCCTGTTTTCTCAGCGTCGTG
ATGGTGAGGGATGATTCGACGTACGGTATCTCCCCCCACGGTTTTTT-CT---TAGTAGGAATT---ATTACCACTGCCC
GCATTCTTCCTCTGATGATGATCTGGATTAGCCGGTTGA----TGTAATGC----ATGCATGCGGAC---GCCATTGATC
TTATC--ATGGAAAGATTGGATGTGAAAAATTAAGGACGG-----TTTTTTCTCTCTTGATTGA----------------
--------------TTTGTTTTTGCCCATTTACCAGGGATCTGTTGCGATGTCACCGGAAATATTTTGAATGTTCTCTTT
CATACGCTGCAGTTATG----GCCTTTACATATTTCGCGTGCGTACATCTC--------GCCGGCCG--TTGTTCTAAAA
CAATCTTAACTATTCTTCAGGA-AAAAAGAAACAATCTTGACTATTGGCGCGCATGTGT---------------------
----ACCCGCAGGTAAAATGAATCCAACTTTAGATC--------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr2D_1_TraesCS2D01G428000
GGGGGCGGGGCCATGGCGGATGGTGGTGATTCTTCTTCGAGCTGATCTTTCGGGTTTCAATCCTTCTCTAGTTCGTCCAT
TAGAATATAGTCGATGGATCTCCGGTGTAAAACATGTT-GTCTCCTTGGGGAGGTGATGTTAGGGTTTCTTGATGTA---
--------------------------------------------------------------------------------
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---------------------CGTGCGAGGCGACGAGATTTGGTAT-----------GATCAATTTAATGGCTTAATGGC
AACGATGGCAGCTTTGGGACGCTGATTCTTATGGTCATGTGCATGAAGACTTCCCGACTGTCATTGACATGGTCAAGCCG
GCTCTGGTAAGGGAGTGGCAATGACGACACGTCAGCGGCTCGTTCTCATAGCGGTAGTGGTCACTCAGTGGTGCATGAAT
CTCGATGTAATTCTTAGGATGTTTGGGGTGCT---T-TGTACATTCAGTAAGCCATTATAATAGATCCATACCCCTTTTC
GCAAAAATATAGTTAGAAAACAAATGTTTTGTGCACTTTAACCATACGACCCTAACAAACTTTCGGTTAATAACAAGAAG
CTACTATCCTTCGGGGACGAAAGAAAAAACAG------------------------------TAGAGTAAAATCCAAGAG
GGTTACGACTATATACTCCATT-CCGATCTACCCTTG--GATAAAAAGG-----CTAACCGTCCACAAATTCAAGTCAAA
GCGCAACACATG-CACTGCGTGAACAGCAAAAAGAATCTTGGTTAAATTTTCGCCAGGCAGTTGCAGGCCAGCACACATT
TCC----CCAAAGGTGGCAACAACAAACACAAGTCTATTCAGATGCTTCGAACTGGCATTCACAAA-CCTCATCTCAAC-
TAATTAACTACTCCATTATTCAGAGAGATC---AGAGAAATAAAAAACCCACAATCATCA-------------AAAAATA
A--AAACAGTAGAAACTGCCGCTACCCCCCACGGAAACCCTACAATTAAGGTGGGCCCCACCGGACCCCTCG-CCCTTTA
AATGCCCCCTCGACGAACG-CCCCCAAGCAGCGCAACAGCAACGCCAC-----------------AACCAAAGCCCAAAA
TCCCGTAGGAG-----GAAAGGAAACGCTCCCGCTCTCGCCCGTGAAAACCA-CCGCCCGAAGATCTTCCCCCGGAGCGC
CGGAGATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGG
CGCAAGCTCTCCGTCGCGTCCAAGTCCGACGCGGCGGCGGCCAGCACGCCCGCCGTGGCCACGGTCACCGCCGGCGGCAA
CGGCGAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGTCGGCGG---CGTCGG
GGCCGCCGCCCAAGGGCCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAG
CACCAGGCGTTCGCGGCGCTGCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTG
CGACGTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGC---------AAGCACAAGGACAACGCCGCCT
TCTGCTACTGCAGCGCCGAGTTCGCCATCGCCGCCG---CCGACGTCGGCACCCCCAACAACTCGCTCTGCAGATAATAA
GCCCGGC-----CCGGCCGGCCGCCGGAGCCC-GTCGTCACTCGCCGGCCACCATTAGCAGCAGTACCTGACCACCATCC
TGTCTGTCCCACGAAAAATGCT-CCTTTTTTTCCCG---TTCTTCTTCATCTTCTTCGGTCCTGTTTTCTCAGCGTCGTG
ATGGTGAGGGATGATTCGACGTACGGTATCTCCCCCCACGGTTTTTT-CT---TAGTAGGAATT---ATTACCACTGCCC
GCATTCTTCCTCTGATGATGATCTGGATTAGCCGGTTGA----TGTAATGC----ATGCATGCGGAC---GCCATTGATC
TTATC--ATGGAAAGATTGGATGTGAAAAATTAAGGACGG-----TTTTTTCTCTCTTGATTGA----------------
--------------TTTGTTTTTGCCCATTTACCAGGGATCTGTTGCGATGTCACCGGAAATATTTTGAATGTTCTCTTT
CATACGCTGCAGTTATG----GCCTTTACATATTTCGCGTGCGTACATCTC--------GCCGGCCG--TTGTTCTAAAA
CAATCTTAACTATTCTTCAGGA-AAAAAGAAACAATCTTGACTATTGGCGCGCATGTGT---------------------
----ACCCGCAGGTAAAATGAATCCAACTTTAGATCGCAGTACT---ACGTGGTGCAATTCGATCCCA------------
-----AAAAAAGTCACCACATGCACCCAACGATTTTTCTTAATAAAAAAAGGCACTGCCACAGTGGCGTTTTTGCTGCTT
TTTTAGGGAGCCTTTCTACTACTGTTTTTACCACTGGTCGTCACATGAGGCAAAGCGTCAGGTGAGCACTGTGCGGCATT
GCCTGAAGCCGAGTACAGAAACGGCCATGGGATAAAACACACACTTGTACGGTGCAAAGCAAAACGGGCGACCAACCGTA
CGACGAAGCTAGGTGACATACAGTACCAGTAGGGACAAGCACGGCACCCAGATTCATGGAGGCCACTGTTC---------
--------------------------------------------------------------------------------
-------------------------ATGTG----TTTAATTTCCTTGTTATTTTT-TCTGATTTTCAGGCTGGCCGGCAC
AACACAATACCTTCAGAGATGCATGCATTGTGTCTGTTTGTGGCTCCGTTCAGTTTACCCCTTTTAGTTCTTG--TGT-T
TTCTGTTGTGATTTTCACGGCACAACCAGGGCATTCAGAGTTACTCCCTCCATCCCATAATATAAGAACGTTTTTAATAC
TACATTAGTTATAAACAAGAGATGCATCTAGCACAACGGAATATTGGAGGGTCGTCGAACTTTTTGAACGGACGAGGATC
TAACCG---------------------------------------------------------ACTAATCCTACTTATCC
ACGGGC----------CCCATATCCCTCTGCTTTTCCGTTTGTTGTTGTGTGCCACACTTTCATTCATGAACCTTTCTCG
GGAGCCCGAACCAAAAGGAAAGGAAAAGCGGCCCCTCTTTTGCAAGCCGGGTAGTGA---TGATGAGATTCCCTCAAAAG
CTTGCACGAGTCTCCGAGCGAGAAAAGTGGGCGCTGCA------------------------GCAGCACTTGCACGCATC
TCGTCG-----TCCGCCGACCTTGAAATTGAATGGATGGATCCTCTCCAAAGGTTTCTCTGGTCCAACAGTGAGCATCTC
GATGAGAAGAAGATGTTGCTTGCTTCTCCTCGCATCCCGATGCGCCCCGTTCCGTTAGATCAGGTCCACCTCTCTCT
>chr2B_28
---------------------------GATTCTTTATCGAGTTAGCCTTTCGAGTTTCAATCCTTCTCTAGTTCTTCCAT
CGGGATATAGTCGATGT---TGCGGTGTAGAACATGTTTGTCTCCTTGGGACGGTGATATTAAGATTTCTTGATGTA---
--------------------------------------------------------------------------------
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---------------------CGTGCAAGACAATGTGATTCAGTGTGAGACGCTTCGGATCAATTTAGGGGTTTAATGGC
AACGATGGCAGCTTTGGGACATCAATCTTTATGGGTATGTGCATGAAGACTTCTTGACTGTCATTGACATGGTAAAGCCG
GCTCTGGTAATAGAGTGGCAATAATGACGCGTCAACAGCTCGTTCTACTAGCGGTTGTGGATATTCGGTGGTCCATGAAT
CTGGATGTAATTCTTAGCATGTTTGGGGTGCT---TTTGTATATTCAGTGAACCTTTATAATAGATCCAGATCCCTTTTC
ACAAAAATATATTTAAGAAAAAGTGTTTTTATGCACTTCCACCTTACGACCCTAACAAACTTCCGGTTAATAACAAGAAG
CTACTATCCTTCGGGGACGAAAGAAAAAACAG------------------------------TAGAGTAAAATCCAAGAG
AGTTACGACTATATACTTCATT-CCGATCTACCTTGATCGATAAAAAGGCTACCCTAACCGTCCACAAATCCAAGTCAAA
GCGCAACACATGACACTGCGTGAACAGCAAAAAGAATCTTGGTTAAATTTTCGCCAGGCAGTTGCTGGCCAGCACACATT
TCC----CCAA-GGTGGCAATATCAAACGCAGGTCTATTCAGATGCTTCGAACTGGCATTCACAAAACCTCATCTCAAC-
TAATTAACTACTCCATTATTCAGAGAGATCAGAAGAAGAAGAAAAAATCCACAATCATCATCATCATTATAATAAAAATA
A--AAACAGTAGAAACTGCCGCTACCCCCCACGGAAACCCTACAATTAAGGTGGGCCCCACCGGGCCCCTCG-CCCTTTA
AATGCCCCCTCGCCGAACGCCCCCCAAGCAGCGCAACAGCAACGCCAC-----------------A-------CCCAAAA
TCCCGTAGAAAAAGGAGAAAGGAAACGCTCTCGCTCCCTCGTAAAACCACCGCCCGCCCGAAGACCTTCCGTCGGAGCGC
CGGAGATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGG
CGCAAGCTGTCCGTCGCGTCGAAGGACACGACGGCGGCCGCCAGCACGCCCACCGTCGCCACGGTCACCGCCGGCGGCAA
CGGCGAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGGCGGCGG---CGTCGG
GGCCGCCGCCCAAGGGCCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAG
CACCAGGCGTTCGCGGCGCTGCTCCGGGAGGCCGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTG
CGACGTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGCGCCGGCGGCAAGCACAAGG---ACGCCGCCT
TCTGCTACTGCAGCGCCGAGTTCGCCATCGC---CG---CCGACGTCGGCACCCCCAACAACTCGCTCTGCAGATAA---
-----GC-----CCGCCCGGCCGCCGGAGCCC-GGCGTCAGTCGCCGGCCACCGTTAG---CAGTACCTGACCACCACCC
TC----TCCCACGAAAAAAAAT-GTTCTCTTCTCCA---TTTTTCT---TCTTCTTCGGTGGTGTTTTCTCAGCGCCGTG
ATGGCGAGGGATGATTCGACCTTCGGTATCTCCCCCCACGGTATTTT-CTTAGTAGTAGGAATT---ATTACCACTGCCC
GCATTCTTTCTCTG-TGATGATCTGGATTAGCCGGGTGA----TGTAATGAACTGATGCATGCGGAC---GCCATTGATG
TTATC--ATGGAAAGATTGGATGTGAAAAATTAAGGACGG-----TTTTTTCTATCTTGATTGA----------------
--------------T-------------------------CTGTTGCCATGTCACCGGAAAGATTTTGATTGTTCCGTTT
GATACGCCGCAGTTATG----GCCTTTACATATTTCGCGTA-GTACATCTC--------GCCGGCCATTTTGTTCTAAAA
CAATCTTAACTATATTCTTCAGGAAAAAGAAACAGTCTTGACTATTGGCGCGCATGTGTTGCAGTACGCCT---------
CTGTACCCGCTGGTAAAATGAATCCACCTTTAGATCGCAGTACTG---CGTGGTACAATTCGATCTAC------------
-----AAAAAAGTCACCACATGCACCCAACGTTTTTATATACAG-------------------------TTTTGCTGTTT
TTTTAGGGAGCCTTTT---TACTGTTTTTACCAGTGGTCGTCACATGAGGCAAAGTGCCCGGCGAGCACTGTGCTGAGTG
---------------------CGGCCATGGGCTAAAACTCACGCTTGTACGGTGCAAAGCAAAACTGGCGACCAACCGTA
CGACGAAGCTAGGTGACATACAGTGCTAGTAGGGACAAACACGGCCCCCAGATTCATGAAGGCCACTGTTCCTGTCGATC
GCGCCCCACCGTACCTGCACCGG----CCGGCGCAACGCAATGCAGGACCCGGCTGCTGTCTGTCGTCAAGGTCGTGCCC
CTCGTCAGTCGGTTGGTCTGCATTCATGTG----CTTAATTTCCTTGTGG-TTTT-CCTGATGTTCAGGCTGGCCGGCAC
AACACAATACCTTCAGAGATGCATGCATGGCGTCTGTTCGTGGCTCAGTTCAGTTTACCCCATTTAATTCTTG--TGTGT
TTCTGTTGTGATTTCCACAGTGCAACCGGGGAACTCGAGGGTACGTC---------------------------------
-------GTTGTAAAAGCGAGCTGCATCTAGCACAACGGAGTATTAGAGGATCTT---ACTTTTTGAACGGACGAGGATC
TTCATCTAACTAACAAACCCTACTTTCTTTACTTC-----------------------AAAAAACCAATCCTGCTTATCC
ACGAGAGATCTGCGTACCCATATCCCTCTGCTTTTCCCGTT-----------------------------ACCTTTCTCG
GGAGCCCGACGCAAAAGGAAAAG------GGCCTCTCTTTTGCAACCCTAGTAGGAGCAGTGATGAGATTCCCTCGA--G
CCTGCACGAGCCTCCAGGTCTTCTCCTCCCAGAAAGAAAGAAAAGAAAAACAAAAAGTGAGTGCTGCACTTGCACGCATC
TCCTCGCCTCGCCCGCCGACCTTGAAAC--------------------------------------------AGTATCTC
GATGAGGAGAAGATGTC----GCTTCTCCTCGCATCCCAACGCGTCCCGTTCCGTTAGATCAGGTCCACCTCTCTCT
>chr2A_89
--------------------------------------------------------------------------------
--------AGTCGATGGATCTCCGGTGTAGAACATGTT-GTATCCTTGGAGAGGTGATGTTAGGGTTTTTTTATGTAGAG
AAAAGTATACTTTTCGTCTCTTAACTTTTGATGAAGTCTAGATTTGGTCCCTCAACTCTAAAACCAGACAACTTGCACCC
CCAACTAACGAAACCGGACAAGGTTTGTCCCTGCTCTCGATTTTGACCGGTTTTGGTGCCGACTGACCCCCGTTTTGACC
GTTGCTGACTAAAATTCACGTAATTTTTTCATATCCATGAACTTTTTGACATTCACATACTCTTTTCAGATCCACATAGT
TTTTTCAAGGTCGTGTAATTTTTTCAAAAATAAACATACCTTTTTTCAAATCCGTGAACTATTTTGAAATTTGTGTACTT
TTTACAAATCCATGAATTTTTTTAATTTGCATGCTTTTCTCAAATCAGTGTATTTTTTTCAAGTTCGTGTAATTTTATTG
AATCCAAGTATTTTTTTTCAAATCCATGAACTGTTTTTGAAATTCACGTACTTGTTTCAAATCCGCATACTTTTTAAAGT
TCGTGTATTTTTTTCAAATCCGTGTTCCTTTTCCAATCCATGAACTTTGTTTGAAATTCACATACTTGTTCCAAGTTGAC
ATAATTTTTCAAGTCCACACATTTGTTTTCTTATTCGCGTAAAGGATATTCAAATCCGCGTATGTTTTTAAGTTCGCATA
AAATTTTCAAATCCAAAAAAATATACATGAATATGAATAAGTATGTCAATTTTTAAAAATTACATGAATTTGAAAAAAAC
CACATGAACTTTAAAGAAGTACGTGGATTTAAAAAAGTACGTGAACATGGAAAAAGTACGCAGATTTGGAAAAAGTACAC
AAATTCTTAAAAAGTTCACGTATTTGAAAAAAGTACCGGAATTTGAAAACATTAAGCGGACTTGGAAAAGGTACGCGAAT
TTGAGTCGGCACGGTCAAAATCGGGTTGGGACATCACAAAAAACGGTCAAACCGTGACCAGGGATGAATCTTGGCCGGTT
TCAGTAGTTAAGGACGCAAGTTGTCCGGTTTTAAAGTTAAGGGACCAAATCTTGACTTCCAAGAATTGAGGGATGAAAAG
TATACTTTTCTCTTTTATGTACGTGCGAGACGACTAGATTTGGTAT-----------GATCCATTGAAGGGTTTAATGGC
AACAATTGCAACTTTGGGACCTCGATCCTTATTGGCATGTGTATGAAGACTTTCCGACTATCAATGACATGGTCAAGCCG
GCTCTTGTAAGGGAGTGGCAATAATGACGCGTGAGCAGCTCAATCTACTAGCGGCCGTGGTCATCCGATGGCCCATGAAT
CTCAATGTAATTCTTATCATGTTTGTGGTGCTGCTT-TGTACATTCAGTGAACCTTTATAGTAGATTTAGATCCCTTTTC
CCAAACTATAGTTACAAAAAAAACATTTTTATCCACTTTCACCGTACGACCCTAACAAACTTTCGGTTAATAACAAGGGG
CTACTATCCTTCGAGGACGAAGGAAAAAACATCATCTCGATCTACCTTTGATAAAAAAACAATAGGGTAAAATCCAAGAG
GGTTACGACTATACACTTCATTTCCGATCTACCCTTG--GATAAAAAGGCTACCCTAACCGTCCACAAATCCAAGTCAAA
GCGCAACACATGACACTGCGTGAAGAGCAAAAATAATCTCGGTTAAATTTTCGCCGGTCAGTTGCTGGCCAGCACACATT
TCCCCAACCAA-GGTGCCAATAACAAACGCAGGTCCATTCAGACGCTTCGAACTGGCATTCACAAAACCTCATCTCAACA
TAATTAACAACTCCATTATTCAGAGAAATAA----------AAAAAATCCACAATCATCATCATAATAATCATAATAAAA
TAGAAACAGTAGAAACTGCCGCTACCCCTCACGGAAACCCTACACCGCCGGTGGGCCCCACCGGCCCCCTCCCCCCTTTA
AATGCCCCCTCGACGAACG-GCCCCAAGCAGCGCAACAGCAACAGCAACATCAACGCCACACCCAAACCAGAGCCCGAAA
TCCCGTAGAAGAAGGAGGAAAGGAG-----------------------ACCA-CCGCCCGGAGATCTTCCGTCGGAGCGC
CGGAGATGGAGCAGCTCGGGGGCAAGAAGTCGAACAAGATCACGGAGATCGTGCGGCTGCAGCAGATGCTCAAGAAGTGG
CGCAAGCTCTCCGTCGCCTCCAAGTCCGACGCGGCGGCGGCCAGCACGCCCGCCGTCGCCACGGTCACCGCCGGAGGCAA
CGGCGAGAGCAAGGCCAAGAAGTTCCTGAAGCGGACGCTGTCCTTCACGGAGAGCCCGCCGTCGTCGGCGGCGTCGTCGG
GGCCGCCGCCCAAGGGGCACCTGGCGGTGTCGGTGGGCCCGGCGATGCGGCGGTTCGTGATCCCGACCGAGTACCTCAAG
CACCAGGCGTTCGCGGCGCTGCTCCGGGAGGCCGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCCTGCTCCGCATCCCCTG
CGACGTGCCCGCCTTCGAGGCCATCCTCCGCGCCGTCGACAAGGGCCGCGCCGGCGGCAAGAACAAGGACAACGCCGCCT
TCTGCTACTGCAGCGCCGAGTTCGCCATCGC---CGCCGCCGACGTCGGCACCCCCAACAACTCCCTCTGCAGATAA---
-----GCCCGGCCCGGCCGGCCGCCGGAGCCCCGTCGTCGCTCGCCGGCCACCGTTAG---AAGTACCTGACTACCATCC
TC----TCCCACGAAAAAAAAAAGTTCTGTTCTCCATTTTTCTTCTTCTTCTTCGTCGGTCGTGTTTTTCCAGCGTCGTG
ATGGTGAGGGATGATTCGACGTACGGTATCTCCCCCCACGGTTTTTTTCT---TACTAGGAATTATCATTACCACTGCCC
GCATTCTTTCTCCGATGATGATCTGGATTAGCCGGGTGAATGGTGTAATGC----ATGCATGCGGACTGCGCCATTGATG
GAATCATATGGAAAGATT-GATGTGAAAAATGAAGGGCGATGATCTTTTTTCTCTCTTGATTGATTGATTTGTTGTTGCC
CATTTTATCAGGGGT-------------------------CTGTTGCGATGTCACCGGAAAGATTTTGAATGTTCCGTTC
GATACGCTGCAGTTATGGGTTGCCTTTACATATTTCGCGTGCGTACATCTTCTATGGCAGCCGGCCG--TTGTTGTAAAA
TAATCTTCA---------------------------CTTGACTATTGGCGCGCATGTGTTGTAGTACTACCACGTACCTG
CTGTACCCTCTGGTGAAATGAATGCCACCTTTGGATCAATCGGAGTAACGTACTGCAATTCGATCCAATGCTGGAAAGAA
GAAGAAAAACAGTCGCCACATGCACACAACTATTTTTTGTGAAAAAAAAAGT-----CCACAGTGACGTTTTTGGCGCCT
TTTACTGCCTGT------------------CCACTGCTCGTCACATGAGGCAAAGCGTGCACTCTGGAGCCGTTATCTGA
GCATCGGCTA------------------------------ACACTTGTACGGTGCAAAGCAAAACTGGCGACCAACTGTA
CGACGAAGCTAGGTGACATACAGTACCAGTAGGGACAAACACGGCACCCAGATTCATGAAGGCCACTGTTCCCGTCGATC
GCGCCGCACCGTACCTGCACGGCTGCACCGGCGCAACGCAATGCAGGACCCGGCTGCTGTCTGTCGTCAGGGTCGTGCCC
CTCATCAGTCGGCTGGTCTGCATTCATGTGCTTCCTTAATTTCCTTGCGT-TTGCCCCTCATGTTCAGGCTGGCCGGCAC
AGCACAATACCTTCAGATATGCAAGGTGA----CTGTTTGTGGTTCAGTTCAGTTTGCCCCTTTTAGTTCTTGTGTGTGT
TTCTGTTGTGATTTCCAC---------GGGGCATTCGAGGGTACGTC---------------------------------
-------GTTGTAAAAACGAGCTGCATCGCACAACCGAACG-----GAGGATCTT---GCTTTTTGAACGGACGAGGATC
TAACAAATCCAAGTACTTTCTTATCTTACGTAAAAAAACCGATCTTACTTTCCCTTGGAAAAAACTAATCATGCTTATCC
ACGGGAGATCTGTAGTCCCATATCCCTCTGCTTTTCCGTTAGTTGTTGTGTGCCACGCTTTCATTCATCGACCTTTCTCG
GGAGCCCGAACCAAAAGGAAAAGC-----GGCCTCTCTTTTGCAAGCCGGGTAGTGA---TGATGAGATTCCCTCAA--G
CTTGCACGAGTCTCCGAGCGAGAAAAGTGGGCGCTGC------------------------TGCAGCACTTGCACGCATC
TCGTCG-----CCCGCCGACCTTGAATGGACGGATCCTCTCG-TCTCCAAAGGTTTCTCTGGTCCAACAGCGAGCATCTC
GATGGGAAGAAGATGTTGCTTGCTTCTCCTCGCATCCCGATGCGTCCCGTTCCGTTAGATCAGGTCCACCTC-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-----S-SSS------S---------------------S-----
SS-S-------------------------S--------------------------------------------------
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-----------------------------S--------------------------------------S--S--------
--------------------SSS---S-------S---------------------------------------------
----------------------S-S---S-------S---------SS-------S-------S--S-----S-------
-----------------S-------------------------------S-S--S--------------S-S--------
S----------S---S----S--SSS----S--------S---S------------------------------------
--------------------------------------------------------------------------------
-----------------S----------------------------------------------------S---------
-----------------------------------------------------------------S--------------
-----------S--------S-------S--S------------------------------------------------
------------------------------------SS--S------S--------------------------------
----------------------------------------------------------------S---------------
----------------------------------------------------------------------S---------
--------S---------------------S-----S-S-SSSSS-SS----------------------SS--------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------SSS-------------------------------------------SSS
SSSSS------------------------------------------------S----SSS-------------------
-SSSSS------------SSS--SS-S-S--SS--S------------S------------S------------------
--------------------------------------------------------------------------------
--------S--------------------------S-------------------------------------------S
--------------------------------------------------------------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSS---------------------S-------------SS---
S-------------------------------------------------------------------------------
-------------SS-SSSSSS------------S---------------------------------------------
----------S-------------------------------------------------------S-------------
-------------------------------------SS---S--------SSSSSS--------S--------------
---------------SSSS----------------------------------------S--------------S--S-S
--S-SSSSSSSSSSSSSSSSS----------S------S--------------------------S--------------
--------------------------------------S-------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------S-------------SSS-----S-----S-----------------
----------------------------S-S---------------S---------------------------------
--------------S---S-SS-----S--------SSS-S---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---S----S-S---S------------------S----S----S--S-SSS----------------------
----SS------------------------------------------------------------------S-------
-----S--------------------------------------------------S-----------SS----------
---------------------S-SSSSSS----S-------------------------------------------SS-
--------------------------------------------------------------------------------
-----------S---------------SSSSSSSSSSSSSSSS---------------------------S---------
--------------------------------------------S--------------------------------
>forward_1416
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------------------------------------GGCTCGTTCTCATAGCGGTA------------------------
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>reverse_3232
--------------------------------------------------------------------------------
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-------------------------------ACCAGGGATCTGTTGCGATG-----------------------------
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>forward_2885
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ACCTGACCACCATCC
TGTCT---------------------------------------------------------------------------
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>reverse_4572
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-----------TCCGCCGACCTTGAAATTGA-------------------------------------------------
-----------------------------------------------------------------------------
