>input_sequence_58065
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-----------ATGGCGTGGAGCGGGTTCAGGGAGGC---GGCGGCGGGGGAGAGCGGCCTGGAGCTCAGCCTCGGCCTA
CCCGCCTACTTCACCAAGCCGGCAGCACCGACAGCAGGTAA---------------------------TTGCTCCTTCTT
GCTGCTCTGTAGGAGCACGTACCACTCGTTGATCATCCGAGCTTTCATGCACCTGTTTGTGTTTGTGGTGTCAGGTTTGG
ACGGGCATGAGTCGAGCGGC------GCCGGTGATTTTGCTCGCCAACCTCAAGGAGCAAGCAATGGCTACAAGGCCAAG
TAAGCAAAAACTTTTTCTTCAGCGTTGCAGCGTTGATCTGACCGTCTTTGTTCTTTAGAAAAATATGTAGATTTTTTATG
CT---------TCGTCTGTGTACATGTCGACGTACGTGCAGGCCG------GCAGCAGCTGCAGCAGCTCCGGTCGTGGG
GTGGCCGCCGGTGCGCTCGTTCCGGCGGAACCTGGCCGCCTCCAAGCCGTCGTCGTCCAAGGAGGACGGCAGGGCAACCA
AAGACAACGACCTCGCCGTCAAGGGCGCCGACGAGCCTGCTGGCCGGAAGGGCCTGTTCGTGAAGGTCAACATGGACGGC
GTCCCCATCGGCCGGAAGGTGGAGCTCAAGGAGCACGGCAGCTACGCCGACCTCTCCGCCACCGTCGACAAGCTCTTCCG
CAGCCTCCTCGCCGGTACACACCC--ACACATACACACCATGCATCATCGATCTTCCGTTCCGCTGTTAGTCAGCCTTGT
ACTCTCG----TGGTCTCACTCACGCGAGTGTTTCCTGCCTGTGCATGTAGCTCAAAGGGACACCGCTGCTGCACCCGAC
GCGATCGCCGGCGGGGAGTACACGCTGGTGTACGAGGACGACGAGGGCGACAGGATGCTGGTCGGGGACGTCCCATGGCA
GTAAGTCATCGTTAGAACAGTTACACCTTGGACAAGTTGCAACTATATATGCTGAATCTGATGAACTGC----------C
TCT--------GCACGCGTGCAGCATGTTCATCGTCACGGCGAAGAGGCTGCGAGGGCTCAAGAGCTCCGACCTGCCGGC
CTCATCGGTGAGTATCTCTGGACAAAATCTGAATCCAT-------TGGCATTCGCCGGCCGAACCAGCATTAACTGAACC
AAATCGCTATCACCTTGTGTGTTCTTCGCAGCTGACGGCGGCCGGGAGCAGGAAGAGGCCGGCGGCTGCGGCCGACTGCT
GA------------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G127400
TCCAGCATATAGGACACTGTTCCAAGTATTTTATACACTCGGGAGTCGGGAAGACAAAACAGGGAGGGT-GCGCGTGTGG
CGGAATGGAATTTGGCCCGCCGGATCAGGCCGGGGTTGGGATATCAAGATATGTTTGCGCCCTAGAGGGAATCATGATGA
AGCCATCAGATCACAAAAGAATAACAGAAACAGTGGGATCACTTTTGTTTATGGATCCCTCCCTCCTCCGTTGCGCTTTC
CGCTTTTCCTCCCGTTTATAAGCTCAACAAGTGCACCACAACCCAACCCAACCCAACACAACACACACTCGCTCCCTCCT
TCTCTGGCTCTT-------CAAACCCGCAGCAGAGAGACGGAGACGAGATAGAAAGAGCGAGAGGAGAGGAG-------A
GTAGGCAGCCGTTGCTTGCTGGCCTAGCTAGCTGCTCC------GTGCTTGGCTCTGGTTTGGCCCTGGTGGGCATCTAG
ATGCTCTCGTTTCATTTCGCGGCCTCTGCT--CCTACGCCGGAATCCCTCCGTCTCCGTGCCTTCCCTCCCTC---TCAT
GGCCTAGATTCGTGCCAGGGCTGCT---AGCAATCAATCGGGAGCCGTTTCTTTCTTCGCGCC----------TACGTAG
CGTAGCCTGCT---CTGCTGCTGCCTGCTCGCTTTGAATACGCGCCCGACCTCCCTCCCTCCCTCCTCGAAACGCTCAAA
CCTTGTCCCTTTCCCGCAAACCCCTGCCGCCTTTTGGTCGCTCTAGCTCTAGCGTA------------CAGGCAGGCAGG
CACAGTACTATACTCCCCGGGCGCCG-------CGCCGGGCTCTTTCATCTCGTCTCGGTCTCAGGTGGGCGAGCCAGCG
TCCAGCACCTGCACTGTT--------TCGCC----------TCTCTCTTCCGCCATATATTCCGTCACCGCGC-------
--------------AGGAGAGACACGCTTGTGACTTG----------------------------TCGTGAGGTCTCCAT
CACTTTCTTGATTTGTCGCCTGAGCTGGGAGCA-GCGAGCAGCGCCGGCGAGCGAGCGAGGTTGCCAGGGACGAACGGTC
G--AGTCACTCATGGCGTGGAGCGGGTTCAGGGAGGC---GGCGGCGGGGGAGAGCGGCCTGGAGCTCAGCCTCGGCCTA
CCCGCCTACTTCACCAAGCCGGCAGCACCGACAGCAGGTAA---------------------------TTGCTCCTTCTT
GCTGCTCTGTAGGAGCACGTACCACTCGTTGATCATCCGAGCTTTCATGCACCTGTTTGTGTTTGTGGTGTCAGGTTTGG
ACGGGCATGAGTCGAGCGGC------GCCGGTGATTTTGCTCGCCAACCTCAAGGAGCAAGCAATGGCTACAAGGCCAAG
TAAGCAAAAACTTTTTCTTCAGCGTTGCAGCGTTGATCTGACCGTCTTTGTTCTTTAGAAAAATATGTAGATTTTTTATG
CT---------TCGTCTGTGTACATGTCGACGTACGTGCAGGCCG------GCAGCAGCTGCAGCAGCTCCGGTCGTGGG
GTGGCCGCCGGTGCGCTCGTTCCGGCGGAACCTGGCCGCCTCCAAGCCGTCGTCGTCCAAGGAGGACGGCAGGGCAACCA
AAGACAACGACCTCGCCGTCAAGGGCGCCGACGAGCCTGCTGGCCGGAAGGGCCTGTTCGTGAAGGTCAACATGGACGGC
GTCCCCATCGGCCGGAAGGTGGAGCTCAAGGAGCACGGCAGCTACGCCGACCTCTCCGCCACCGTCGACAAGCTCTTCCG
CAGCCTCCTCGCCGGTACACACCC--ACACATACACACCATGCATCATCGATCTTCCGTTCCGCTGTTAGTCAGCCTTGT
ACTCTCG----TGGTCTCACTCACGCGAGTGTTTCCTGCCTGTGCATGTAGCTCAAAGGGACACCGCTGCTGCACCCGAC
GCGATCGCCGGCGGGGAGTACACGCTGGTGTACGAGGACGACGAGGGCGACAGGATGCTGGTCGGGGACGTCCCATGGCA
GTAAGTCATCGTTAGAACAGTTACACCTTGGACAAGTTGCAACTATATATGCTGAATCTGATGAACTGC----------C
TCT--------GCACGCGTGCAGCATGTTCATCGTCACGGCGAAGAGGCTGCGAGGGCTCAAGAGCTCCGACCTGCCGGC
CTCATCGGTGAGTATCTCTGGACAAAATCTGAATCCAT-------TGGCATTCGCCGGCCGAACCAGCATTAACTGAACC
AAATCGCTATCACCTTGTGTGTTCTTCGCAGCTGACGGCGGCCGGGAGCAGGAAGAGGCCGGCGGCTGCGGCCGACTGCT
GATTCGAACTCGCCCGGCGTTGTCAAGGCCTTTTTTGCTGC-------------------------TACGTACGTACGCA
CGTATGAAGATGAAATCACGGCTGCTGTAACTAGAGCCGTTTCTGTGATGCTACTGCTATTTTGGG-GGCCATAGTGGCC
GTATTTTGATGCTTTTTT-CTACGTCTAACTAAATGCGATTCGTCGGGTGATCTAATCTAATACTAGTACTAGTTTGTTC
T---TGGTATAATTGCACAGGTACTTCA--TGAACTTGATCTTTGCCGGTTGTTTGTT--TCTGTGGTGCTGCTGCTGCT
CGAATGGTGTTGGTTCAGGTCAAACTTCTTCTGATCGATGTGTCCGACCAAAAAAAAAGGGACCTGCTGCACCTACCAAG
CTTGTGTATCTGGTGCCATCCTCTTGGCTCAAAGGTTCACCTTCAGTGAGAGAGAGCTTTTTCGGACTGGACAATGATGT
TGATGATGGTTTATAGCCATGCAATCCAACTCTT--CTCAAGAAATCACTTGCATGTTTGGC--------------GCCC
ACCTT--CTGTTTTAGTTAACCTCAATACCAAGAAAGAAGTCCAAATCATGCAAATCC---AGAGCAAACTCTGAGTTCA
AATCTGACAAAAGAGCTCTCAATTGTTTCATTTGAGGAACTTGTGGCAATTATATCAACAACATAAATAAGCACAAAAAA
TGGATGTTTTGGACTTATTGTAGATGAATAGTGAGGTGCCAGACTTTGAAGGAATAAAACCAAGTTGTTGCAATTTTGTA
CTTAAACGAAAGTACCAGGCTCTAGGGGCTTCTTTTAGTCCATAGAGAGACTTA-TCAAGCCAGCACACATGAGATGGCT
TGTTCTTATCTTGAAAACCAAGAGGTTGCTTCATATACACTTCCTCTTCCAAAACACCATAAAGAAACGCATTCTGCATA
TCTAGCTGCTTGAGACTCCATCCTATGAATGCAACAATGGACAACATGAGGTTTTGCAGTTTTCTTTTCTCCTAGTTTGG
TCTCATGGTGTGCAAAGA
>chr3A_33
--------------------------------ATACAGTGGGGAGTCGGGACGACAAAACACGGAGGGTGGCGCGTGTGG
CGGAATGGAATTTGGCCCGCCGGATCAGGCCGGGGTTGGGATATCAAGATATGTTTGCGCCCTAGAGGGAATCATGATGA
AGCCATCAGATCACGAATGAATAATGGAAACAGTGGGATCGCTTTTGGTTCATGGCTCCCCTTTCCTCCGTTGCGCTTTC
CGCTTTTCCTCCCGTTTATAAGCGCAACAAGTGCACCACAACCGAGCCCAACCCA--------CACACTCGCTCCTTCCT
TCTCCAGCCCTTCCACACACAAACCCGCAGCAGAGAGAGAC----------------------GAGAGAGAGAGGTC---
GTAGGCAGCCGTTGCTTGCTGGCCTAGCTAGCCGCTGC------GTGCTTGGCTCTGGT-----------GGGCATCTAG
ATGCTCTCGTTTCCTTTCGCGGCGTCTGCTCAGCTACGCCGGAATCCCTCCGTCTCCGGGCCTTCCCTCCCTCCTCTCAT
GGCCTAGATTCGTGCCAGTGCTGCTCGTAGCAATCAATCCAGAGCCGTTTCTTTCTTCTTTCCTCGCGCCTAGTACGTAG
CGTAGCCTGCTCTGCTGCTGCTGCCTGCTCGCTTTGAATACGCGCCCG------------CCCTCCTCAAAACGCTCAAA
CCTTGTCCCTTTCCCGCAAACCCCTACCGCCTTTTGGTCGCTCTAGCTCTAGCGCACAGGC----AGGCAGGCAGGCAGG
CACAGTACTATACTCCCCGGGCGCCG-------CGCCGGGCTCTTTCACCTCGTCTCGGTCTCAGGTGGGCGGGCGGGCG
TCCAGCACCTGCACTGTGCCCTCCTCTCGCC----------TCTCTCTTCCGCCATATATTCCGCCCCCGCCTGTCACCG
CGCAC---GAGGAGAGGAGAGCCGCGCTTGTGAGTCGTGAGTCGTGACTTGTCGGAGCCAGCTCCTCT----GTCTCCAT
CGCTGTCTTGATTTGTCGCCTGAGCTGGGAGC--------AGCGCCGGCGAGGGAGCGAGCTTGCTAGGGGCGGTTGACT
CTCACTCACTCATGGCGTGGAGCGGGTTCAGGGAGGC---GGCGGCGGGGGAGAGCGGCCTGGAGCTCAGCCTCGGCCTC
CCCGCCTACTTCACCAAGCCGGCAGCACCACCTGCAGGTACGTCTGCTTTGCGACGTCGATCCGTTAGTTTCTTCTTCTT
GCTGCTCCCTGCCTGCTACAT--ACTTGTTGATCATCCGAGTTTTCATGGATTTGTCTGCGTTTGTGGTGGCAGGTCTGG
ACGGGCAGGAGTCGAGCGGCGCCGGCGCCGGTGATTTTGCTCGCCATCCTGATGGAGGAAGCAACGGCTCCAAGGCCAAG
TAGGCAAAAACTTTATTTTCACAGTTGCAGCGTTGATCTGATGATCGTCCTGTTC------------------TTTTATA
CT---------TC------------GTCCACGTACGTGCAGGCCG------GCAGCAGC---AGCAGCTCCGGTCGTGGG
GTGGCCGCCGGTGCGCTCGTTCCGGCGGAACCTGGCCGCCTCCAAGCCGTCGTCGTCCAAGGAGGACGGCAGGGCAAGCA
AAGAC---------------AAGGGCGCCGACGAGCCTGCGGGCCGGAAGGGCCTGTTCGTGAAGGTCAACATGGACGGC
GTCCCCATCGGGCGGAAGGTGGAGCTCAAGGAGGACGGCAGCTACGCTGACCTCTCCGCCACCGTCGACAAGCTCTTCCG
CAGCCTCCTCGCCGGTACAGATACATACCCACACACACCATGCATCATCGATCTTA-----CGCTGTCAGTCAGCCTTGT
ACTCTCC----TGGTCTCACTCATGCCAGTGTTTCCTGCCTGTGCATGTAGCTCAAAGGGACGCCGCCGCTGCCCCCGAC
GCGATCGCCGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGCGACAGGATGCTGGTCGGGGACGTCCCATGGCA
GTAAGTCA--------------ACACCTGAGACAAGTTGTAAC----TATGCTGATTCTGATGAACTGACAAATCTCGTC
TGT--------GCACGCGTGCAGGATGTTCATCGTCACAGCGAAGAGGCTGCGAGGGCTGAAGAGCTCCGACCTGCCAGC
CTCGTCGGTGAGTATCTCCGGAATAAGTCTGAATCCTGCGCACTATGGCATACGCCGGTCGAATCAGCACTAACTGAACC
AAATCGCTATCTCCTTGTGTGTTCTTCGCAGCTGACGGCGGCCGGGAGCAGGAAGAGGCCGGCGGCCGCGGCTATAATTA
GAGCCGTGTCTGTGACGAGGGTTAATCCTG--TTTTGCTAC-------------------------TACGTACGTACGCA
CGTATGAGGATGAAATCACGGCTA---TAATTAGAGCCGTGTCTGTGACGCTGCTGCTATTTTGGG-GGCCATCGTGGCC
GTATTTTGGTGCTTTTTTTCTACTTCTAACTAGATGCG-TTCGTCGGATGCTCTAATCTAATACTAGTACTAGTATGTTC
TTAGTGGTATAATTGCACAAATACTTCGTGTGAACTTGATCTTTGCCGGTTGTTTGTT--TG--------TGGTGCTGCT
CGAACAGTGTTGGTTCAGGTCCAATTTCTTCTGATCGATGTATAGGACCAAAAAAA------------------------
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>chr3D_46
---------------------------------------------TCGGGACGACAAAACACGGAGGGTG-CGCGTGTGG
GTGAATGGAATTTGGCCCGCCGGATCAGGCCGGGGTTGGGATATCAAGATATGTTTGCGCCCTAGAGGGAATCATGATGA
AGCCATCAGATCACGAAAGAATAATGGGAACAGTGGGATCGCTTTTGGTTCATGGCTCCCCTTCCCTCCGTTGCGCTTTC
CGCTTTTCCTCCCGTTTATAAGCTCAACAAGTGCACCACAACCCGACCCAACCCAAGACACACTCG-CTCCTTCCTTCCT
TCTCCGGCTCTT-------CAAACCCGCAGCAGAGAGAC------GAGGTAGAGAGAGCGAGAGAGAGAGAGAGGTAGTA
GTAGGCAGCCGTTGCTTGCTGGCCTAGCTAGCTGCTGCTGCGGCGTGCTTGGCTCTGGC-----------GGGCATCTAG
ATGCTCTCATTTCCTTTCGCGGCAGCTGCTCCCCTACGCCGGAATCCCTCCGTCTCCGTGCCTTCCCTCCCTCCTCTCAT
GGCCTAGATTCGTGCCAGTGCTGCTCGTAGCAATCAATCGGGAGCCGTTTCTTTCTTCTTTCCTCGCGCCTAGTACGTAG
CGTAGCCTGCTCTGCTGCG---GCCTGCGCGCTTTGAATACGCGCCCT-------------CCTCCTCAAAACGCTCAAA
CCTTGTCCCTTTCCCGCAAACCCCTGCCGCCTTTTGGTCGCTCTAGCTCTAGCGTACAGGCAGGCAGGCAGGCAGGCAGG
CACAGTACTATACTCCCCGGGCGCCGCGCCGGCCGCCGGGCTCTTTCATCTCGTCTCGGTCTCAGGTGGGCGGGCGGGCG
TCCAGCACCTGCACTGTGCCCTCCTTTCGCCCCCCTCTCTCTCTCTCTTCCGCCATATATTCCGCCCCCGCTTGTCACCG
CGCAGGAGGAGGAGAGAAGAGACACGCTTGTGACCTG----------------------------TCG----GTCTCCAT
CACTTTCTTGATTTGTGGCCTGAGCTGGGAGCAGGCGAGCAGCGCCGGCGAGCGAG-GAGGTTGCTAGGGACGGACGGTC
G--ACTCACTCATGGCGTGGAGCGGGTTCAGGGAGGCTGCGGCGGCGGGGGAGAGCGGCCTGGAGCTCAGCCTCGGCCTC
CCCGCCTACTTCACCAAGCCGGCAGCACCAACAGCAGGTAATTTGA----------------------TTTCTTTTTCTT
GCTGCTCTGTAGGAGTACGTACCACTCCTTGATCGTCCCAGTTTTGACGCATCTGCTTGTGTTTGCGGTGTCAGATTTGG
ACGGGCAGGAGTCCAGCGGCGCCGGCGGC------TCTGCTCGCCAACTTCAAGGAGGAAAC------TACAAGGCCAAG
TAAGCAAAATCTTTCTTTT--CAGTTGCAGCGTTGATCTGACCGTCTTTGTTCTTAAAAAAGGAACTAATGTTTCCTCGG
TTAAACTAAACTC------------GCCGACGTACGTGCAGGCCGGCGGCAGCAGCAGC---AGCAGCTCCGGTCGTGGG
GTGGCCGCCGGTGCGCTCGTTCCGACGGAACCTGGCCGCCTCCAAGCCGTCGTCGTCCAAGGAGGACGGCAGGGCAAGCA
AAGACGACGACGTCGCCGTCAAGGGCGCCGACGAGCCTGCGGGCCGGAAGGGTCTGTTCGTGAAGGTCAACATGGACGGC
GTCCCCATCGGGCGGAAGGTGGAGCTCAAGGAGGACGGCAGCTACGCCGACCTCTCGGCCACCGTCGACAAGCTCTTCCG
CAGCCTCCTCGCCGGTACACACCC--ACACACACACACCATGCATCATCGATCTTA-----CGCTGACAGTCCA----GT
ACTCTCGTTGATGGTCTCACTGATGCAAGTGTTTCCTGTCTGTGCATGTAGCTCAAAGGGACGCCGCCGCTGCCCCAGAC
GCGATCGCCGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGCGACAGGATGGTGGTCGGGGACGTCCCATGGCA
GTAAGTGGAAAGAACAAACTAGACCTGGACGGCACCTGAGAAAC-----TGCTCGATCTGCTAAACTAATCAAACAATCT
CACCTCTGTGCGCACGCGTGCAGGATGTTCATCGTCACGGCGAAGAGGCTGCGAGGGCTCAAGAGCTCCGACCTGCCGGC
CTCGTCGGTGAGTATCTCTGGGATAAATCTGAATCCTGCACAC--TGGCATACGCCGGTCGAACCAGCATTAACTGAACC
AAATCGCTATCTCCTTGTGTGTTCTTCGCAGCTGACGGCGGCCGGGAGCAGGAAGAGGCCGGCGGCTGCAGCCGACTGCT
GATTCGAACTCGCCCGGCGTTGTAAAGGCCTTTTTTGACGAGGGTTAATCCGGTTTTGCTGCTACGTATGTACGTACGCA
CGTATGAGGATGAAATCACGGCT---GTAATTAGAGCCGTGTCTGTGATGCTACTGCTATTTTGGGTGGCCATCGTGGCC
GTATTTTGATGCTTTTTT-CTACGTCTAACTAGATGTGATTCGTCGGGTGATCTAATCTAATACTAGCACTAGTATGTTC
T---TGGTATAATTGCACAAATACTTCA--TGAACTTGATCTTTGCCGGTTGTTTGTTCCTG--------TGGTGCTGCT
CGAATGGTGTTGGTTCAGGCCCAACTTCTTCTGATCGATGTGTCCGACCAAAAAAGAGGGAC------------------
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>chr3D_2541
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-------------------------------------------------------------------TGCACCTACCAAA
CTTCTATAGTCGGTGCCATCCTCCTGACTCAAAGGTTCACCTTCAGTGAGAGAGAGTCTTTCTGAACAGGACAAGGGTGT
TGGTGAAGTTTTACAATTCTGCAACCCAACTCTC--CTCAAAAGATCAGTTGCATATTTTTCCTGAGAAAGATGAATACC
ACCTTCCCT-TTTTTCTTGACCTCAATACCAAGAAAGAAGTGCAAATCTCCTAGATCCTTGAGAGAAAATTCTAAATTCA
AATATGTCAAGAGAGCTATCAC-TGCTTTATCTGAAGAACTTGTTACAATAATATCATCAACATAAATAAGCACAAAT-A
TTGCCGTATGAGACTTGTTGTAGATGAACAGTGAAGTATCAGACTTTCAAGGAACAAAACCAAGTTTTTGCAGTTTCATA
CTTAAACGAGGATACCATGCTCTAGGAGCTTGCTTCATCCCATAGAGAGATTTG-TCAAGCCTGCACACATGATATGGTT
TGTTCTTATCTTCAAACCCAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACACCATGCAGAAATGCATTCCGCACA
TCTAGTTGCCTGAGACTCCATCCTCTAGATACAGCAATAGACAA------------------------------------
------------------
>chr3A_2541
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-------------------------------------------------------------------TGCACCTACCAAG
CTTTGACAGTTGGTGCCATCCTCCTGACTCAAAGGTTCACCTTCAGTGAGAGAGAGTTTTTTTGAACTGGACAATGGTGT
TCGTGAATGTTTACAATTCTACAACCTGACTATC--CTCAAAAGATCAGTTGCATATTTTTCCTGAGAAAGATGAAGACC
ACCTTCCTTGTTTTCATTGACCTCAATACCAAGGAAGAAGTGCAAATCTCCTAGATAATTGAGAGAAAATTCTGAATTCA
AATCTCACAAAAGGGTTGTCAC-CGCTTCATTTGAAGAACTTGTAACAATGATATCATCAACATAAATAAGCACAAAG-A
TTGATGTATGAGACTTGTTGTAGATGAACAGTGAAGTATCAGACATTGAAGGAACAAAACCGAGTTGCTGCAAATTTGTA
CTTAAATGAGAGTATCAAGCTCTGGGAGCTTGCTTCAGTCCATAGAGAGATTTG-TCAAGCCTGCACACATGACACGGTT
TGTTCTTGTCTTCAAACCCTGGAGGTTGTTTCATATATACTTCCTCTTTCAGAACACCATGAAGAAACACATTCTGCACA
TCTAGCTGCCTGAGACTCCATCCT--------------------------------------------------------
------------------
>chr5D_2541
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-------------------------------------------------------------------TGCACCTACCAAA
CTTCTATATCTGGTGCCATTTTCTTGGCTCAGTGGTTCACCTTCAGTAAGGGAGAGCTTTTCTAAACTGGACAATGGTGT
TAATGACGGTTTACAGCCCTGCAATCCAACTCTT--CTCAAAATATCAGTTGCATATTTTTCTTGGGACATATGAAGCCC
ACCTTCTCTGTTCTTCTTAACCTCAATACCAAGAAAGAAGAACAAATCACCCAAATCTTTGAGAGCAAAATCTGAGTTCG
AATCTGACAAAAGAGCTCTCAC-TGCTTCATTTGAGGAACTTGTGACAATTATATCATCAACATAAATGAGCACAAAA-A
TGGATATGTTGGACTTATTGTAAATGAACAGTGAGGTGCCAGACTTTGAAGGAATAAAACCAAGTTGTTGCAATTTTGTA
ATTAACCGAGAGTACCATGCTCTAGGTGCTTGTTTCAGTCCATAGATAGACTTG-TCAAGCCTGCACACATGAGACGGTT
TGTTCTTATCTTAAAACCCAGGAGGTTGCTTCATATAAACTTCCTCTTCCAGAACACCATGAAGAAACGCATTCTGCACA
TCTAGCTGCCTGAGACTACATCCTCTGGAT--------------------------------------------------
------------------
>chr1D_2541
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-------------------------------------------------------------------TGCACCTACCAAA
CTTCTGAATCCGGTGCCATCCTCTTGGCTCAAAAGTTCACCTTCAGTGAGAGATAGTTTTTCTGAACTGGACAATGGTGT
GGATGAAGGTTTACAGCCCTGCAATCCAACTCTT--CTCAGGAGATCAGTTGCATACTTTTCTTGGGAAAGATGCAAACC
ACCTTCATTGTTTTGCTTAACTTCAATACCCAGAAAGAAGTGTAAATCTCCCAAATCCTTGAGAGCAAATTTTGAATTCA
AATCTGACAAAAGAGCTCTCAC-TGCTTCATTAGAGGAGCTTGTGACAATTATATCATCAACATAGATAAGCACAAAA-A
TGGATGTGTTGGACTTATTGTAAATGAACAGTGAGGTGTCAGATCTTGAAGGAGCAAAACCTAGCTGTTGCAATTTTGTA
CTTAAACGAGAGAACCATGCTCTGGGGGCTTGTTTCAATCCATAGAGTGA-TTT-TCAAGCCTTCACACATGAGATGGTT
GGTTCTCATCTTCAAACCCAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACGCCATGAAGAAACGCATTCTGCACA
TCTAGCTGTCTAAGACTCCATCCTCTGGATACAGCAATGGACA-------------------------------------
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>chr2D_2541
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-------------------------------------------------------------------TGCACCTACCAAA
CTTCTATATGTGGTGCCACCCTCTTGGCTCAAAAGTTCACCTTCAGTGAGAGATAGTTTTTCTGAACTGGACAATGGTGT
GGATGAAGGTTTACAGCCCTGCAATCCAACTCTT--CTCAGGAGATCAGTTGCATACTTTTCTTGGAAAAGATGCAAACC
ACCTTCACTGTTTTGCTTAACTTCAATACCCAGAAA-AAGTGCAAATCTCCCAAATCCTTTAGAGCAAAATCTGAATTCA
AATCTGACAAAAGAGCTCTCAC-TGCTTCATTAGAGGAGCTTGTGACAATTATATCATCAACATAGATAAGCACAAAA-A
TGGATGTGTTGGACTTATTGTAAATGAACAGTGAGGTGTCAGATCTTGAAGGAGCAAAACCTAGCTGTTGCAAGTTTGTA
CTTAAACGAGAGTACCATGCTCTGGGGGCTTGTTTCAATCCATAGAGTGA-TTTATCAAGCCTGCACACATGAGATGGTT
GGTTCTCATCTTCAAACCTAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACGCCATGAAGAAACGCATTCTGCACA
TCTATCTGTCTAAGACTCCATCCTCTAGATACAGCAATGGACA-------------------------------------
------------------
>chr2D_2541
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-------------------------------------------------------------------TGCACCTACAAAA
CTTCTGTATCTGGTGCCATCCTCTTGGCTCAAAAGTTCACCTTCAATGAGAGATAGTTTTTCTGAACTGGACAATGGTGT
GGATGAAGGTTTACAGCCCTGCATTCCAACTCTT--CTCAGGAGATCATTTGCATACTTTTCTTGGGAAAGATGCAAACT
GCCTTCACTATTTTGCTTAACTTCAATACCCGGAAAGAAGTGTAAATCTCCCAAATCCTTGAGAGCAAATTTTGAATTCA
AATCTGACAAAAGAGCTCTCAC-TGCTTCATTAGAGGAGCTTGTGAAAATTATATCATCAACATACATAAGCACAAAA-A
TGGATGTGTTGGACTTATTGTAAATGAACAGTGAGGTGTCAGATCTTGAAGGAGCAAAACCTAGTTGTTGCAATTTTGTA
CTTAAACGAGAGTACCATGCTCTTGGGGCTTGTTTCAATCCATAGAGTGA-TTTATCAAGCCTGCACACATGAGATGGTC
GGTTCTCATCTTCAAACCCAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACGCCATGAAGAAACGCATTCTGCACA
TCTAGCTGTCTAAGACTCCATTCTCTGGATACACCAATGGA---------------------------------------
------------------
>chr1A_2541
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-------------------------------------------------------------------TGCACCTACTAAA
CTTCTGTATTTGGTGCTATCCTCTTGGCTCAAAAGTTCACCTTCAGTGAGAGATAGTTTTTCTGAACTGGACAATGGTGT
GGATGAAGGTTTACAGCCCTGCAATCTAGCTCTT--CTCAGGAGATCAGTCGCATACTTTTCTTGGGAAAGATACAAACC
ACCTTCATTGTTTTGCTTAACTTCAATACCCAGAAAGAAGTGTAAATCTCCCAAATCCTTGAGAGCAAATTCTGAATTCA
AATCTGATAAAAGAGCTCTCAC-TGCTTCATTAGAGGAGCTTGTGACAATTATATCATCAACATAGATAAGCACAAAA-A
TTGATGTGTTGGACTTATTGTAAATGAACAGTGAGGTGTCAGATCTTGAAGGAACAAAAACTAGCTGTTGCAATTTTGTA
CTTAAACGAGAGTACCAAGCTCTGGGGGCTTGTTTCAATCCATAGAGTGA-TTTATCAAGCCTGCACACATGAGATGGTT
GGTTCTCATCTTCAAACCCAGGGGGTTGCTTCATATACACTTCCTCTTCCAGAACACCATGAAGAGACGCATTCTGCACA
TCTAGCTGTCTAAGACTTCATCCTCTGGATACAGCAATGGACA-------------------------------------
------------------
>chr5B_2541
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-------------------------------------------------------------------TGCACCTACCAAA
CTTCTGTAGTTGGTGCCATCCTCCTGACTCAAAGGTTCACCTTCAGTGAGAGAGAGTCTTTCTGAACTCGACAAGGGTGT
TGGTGAAGGTTTACAATTCTGCAACCCAACTCTC--CTCAAAAGATCAGTTGCATATTTTTCCTGAGAAATATGAAGACC
ACCTTCCCTGTTTTTATTGACCTCAATACCAAGAAAGAAGTGTAAATCTCCTAGATCCTTGAGAGCAAATTCTGAATTCA
AATCTGTCAAGAGAGTTGTCAC-TGCTTCATCTGAAGAACTTGTAACAATAATATCATCAACATAAATAAGCATAAAT-A
TTGTTGTATGAGACTTGTTGTAGATGAACAGTGAAGTATCAGACTTTGAAGGAACAAAACCAAGTTGCTGCAATTTTGTA
CTTAAATGAGAGTACCATGCTCGAGGAGCTTGCTTCAGTCCATAGAGAGA-CTTGTCAAGCCTGCACACATGATACGGTT
TGTTCTTGTCTTCAAACCCAGGAGGTTGCTTCATATATACTTCCTCTTCCAGAACACCATGAAGAAACGCATTCTGCACA
TCTAGCTGCCTGAGACTCCATCCT--------------------------------------------------------
------------------
>chr7D_2541
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TGCACCTACCAAG
CTTCGATAGTTGGTGCCATCCTCCTGACTCAAAAGTTCACCTTTAGTGAGAGAGAGTCTTTCTGAACTGGACAACGGTGT
TGGTGAAGGTTTACAATTCTGCAACCCAACTCTCTCCTCAAAAGATCAGTTGCATATTTTTGCTGAGAAAGATGAAGACC
ACCTTCCCTATTTTTCTTGACCTCAATACCAAGAAAGAAGTGCAAATCTCCTAGATCCTTGAGAGCAAATTCTGACTTCA
AATCTGACAAGAGAGCTATCAC-TGCTTCATCTGAGGAACTTGTAACAATGATATCATCAACATAAATAAGCACAAAG-A
TTGACGTATGAGACTTGTTGTAGATGAACAGTGAAGTATTATACTTTGAAGGAACAAAACCAAGTTGTTGCAGATTTGTA
ATTAAACAAGAGTACCATGCTATAGGAGCTTGCTTCAGTCCATACAGAGA-TTTGTCAAGCCTTCGCACATGATATGGTT
TGTTCTTATCTTCAAACCCAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACACCATGAAGAAACGCATTCTGCACA
TCTAGCTGCCTGAGACTCCATCCTCTAGATACAGCAATAGATAACA----------------------------------
------------------
>chr7D_2541
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TGCACCTACCAAG
CTTCTATAGTTGGTGCCATCCTCCTGACTCAAAGGTTCACCTTCAGTGAGAGAGAGTCTTTCTGAACTGGACAACGGTGT
TGGTGAAGGTTTACAATTCTGCAACCCAACTCTC--CTCAAAAGATCAGTTGCATATTTTTCCTCAGAAAGATGAAGACC
ACCTTCCTTATTTCTCTTGACCTCAATACCAAGAAAAAAATGCAAATCTCCTAGATCCTTGAGAGCAAATTCTGACTTCA
AATCTGATAAGAGAGCTGTCAC-TGCTTCATCTGAGGAACTTGTAACAATGATATCATCAACATAAATAAGCACAAAG-A
TTGATGTATGAGACTTGTTGTAGATGAACAGTGAAGTATCAGACTTTGAAGGAACAAAACGAAGTTGTTGCAGTTTTGTA
CTTAAACGAGAGTACCATGCTCTAGGAGCTTGCTTCAA--------GAGA-TTTGTCAAGCCTGCACGCATGATATGGTT
TGTTCTTATCTTCAAACCCAGGAGG-TGCTTCATATACACTTCCTCTTCCAGAACACCATGAAGAAACACATTCTGCACA
TCTAGCTG------------------------------------------------------------------------
------------------
>chr6B_2541
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TGCACCTACCAAG
CACCTACTGCA-GTGTCATCCTCCTGACTCAAAAGTTCACCTTCAGTGAGAGAGAGTTTTTCTAAACTAGACAATGGTGT
TGATGAGGGTTTACAATTTTGCAACCCAACTCTC--CTCAAAAGATCAGTTGCATATTTTT-CTGAGAGAGATAAAGACC
ACCTTCCCTATTTTTCTTGACCTCAATACCAAGGAAGAAGTGCAAATCTCCCAGATCTTTGAGAGCAAATTCTGAGTTTA
AATCTGACAAAAGAGTTGTCAC-TGCTTCAATTGAGGAACTTGTAACAATGATATCATCCACATAAATAATCACAAAA-A
TTGAAATATGTGACTTATTGTAAATGAACAGTGAAGTGTCAGACTTTGAAGGAACAAAACTAAGTTGTTGCAATTTTGCA
CTTAAATGAGAGTAACACGCTCTAGGAGCTTGCTTCAGTGCATAGAGAGA-TTTATCAAGCCTGCACACATGATATGGTT
TGTTCTTATCTTCAAACCCAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACACCATGAAGGAACGCATTCTACACA
TCTAGCCGCCTGAGATTTCATCATCTAGATACAACAAT------------------------------------------
------------------
>chr1D_2542
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--------------------------------------------------------------------GCACCCACTAAG
CTTATGTATCTGGTGCCATCCTCTTGATCCAAGAGTTCTCCTTCAGCAAGTGTAAGTTTCTCTAAACTGGACAAAGGTGT
TGGGGAAGGCTTGCATCCCTGTAACCAAACTCTG--CTCAAGAGACATGTTGCATATTTTCCCTGAGAGAGATGAAGACC
ACCTTCTTTGTTTCTTTTAACCTCAATACCAAGGG-AAAATGCAAATCACCTAAGTCCTTAAGTGCAAATTCTGAGTTCA
AATCTGACAAAAGAGCCTTTAT-TGCTTCATCTGATGACCTTGCGACAATAATATCATCAACATAGATATGCAAGAAA-A
CTGAAACATTTGACTTGTTGTAGATAAACAATGATGTGTCAGATTTTGAAGGAGTGAAACCAAGTTGCTGCAATTTTGTA
CTCAATCTAGAATACCATGCTCTGGGGGCTTGTTTTAGTCCATATAGTGA-TCTGTCAAGCCTGCATATGTGAGATGGTT
TGTTTTTATCCTCAAACCCAGGAGGTTGCTTCATATACACTTCCTCTTCCAGAACACCATGAAGAAACGCATTATGCACA
TCTAGTTGTCTGAGAGTCCAACCT--------------------------------------------------------
------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S-----------S---------S------------------
--------------------------------------------------------------------------------
--------------S---------SS--------------S------S--SSS-SSS--S-SS-----------------
--------------------------------------------------------S---SSS------------S----
----S----------------------------------SSSSSS---S----S----------SSSSS-----------
------------------------------------S----------------------SSSSSSSSSSS----------
-------------S---------S--------------------------------------------------------
------------------S---------------------------------------SSS-------------------
------------------------------------------------SSSSSSSSSSSS--------S-----------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S--SS---
-----------------S----------------------------------------------S-S----SS-------
--------------------------------------------------------------------SSSS--------
-----------------------------------------------------------------S-------S------
----S--------------------------------------------------------------------------S
-----------------------------S----------------------------------------S--S------
-----------------------------------------S---------S----------------------------
-------S-------------------------------------------------S------S---------------
--------------S-S----SS--------------------------------S-S---SSS-SSS-SS---------
-------------SSSSSSSSSSSS----------------------------------SSS------------------
-----------------------------------------------------------------------------S--
-----S-----S----------------------------S---------------------------------------
-----------S---------------------S----------------------------------------------
-------------------------------S-----------------------SSSSSS------S------------
-----------------------S--S-----------------------------------S----S-----S------
--------------S-----------------------------------------------------------------
--------SSSSS-S--SSSSS------SS---------S---SSSS---------------------S-----------
-S---------------------S--------------------------------------------------------
---S------------------SS------------SS-------------S------S---------------------
-----------S--------------------------------------------------------------------
-----------------------S--------------------------------------------------------
-------S---------------SSS----S---------S--------------------------------S------
--------------------------------S-----------------------------------------S-----
-------------------SS----------------------------------------SSSSSSSSS--S-------
---------------------S-----------------------------------S--SSSSSSS-------------
---S----------------------------------------------------------S-S-----------S---
------S------S----S------------------------S----S------S---SS-------------------
--------------SS-------------------------S-------SS------------------S----------
---------------------SS--S-------------------S-----------S--------------------S-
-------S--------------------S---------------------------------------------------
---------S-------S-------------S---------------------S--------S---------------S-
------------S---S---S------------------------------S--------S-----------------S-
---------S--------------S--S--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_52
--------------------------------ATACACTCGGGAGTCGGGAA----------------------------
--------------------------------------------------------------------------------
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------------------
>reverse_1463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CGTTGCAGCGTTGATCTGAC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>forward_1030
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------CACGCTTGTGACTTGTCGTG----------
--------------------------------------------------------------------------------
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------------------
>reverse_2713
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CTGCTGCT
CGAATGGTGTTG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
