>input_sequence_58062
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----------------------------------------------------------------ACC---------TAAG
CTAGCTAGCTCACACCTCAGAGCTCAAGCTAGGCAGGAGCAGTAGTGTAGTAGCCAGCCAGCATCACTTCAGTTG-----
TGCCATGAGCTCTCGCAGCAGCAGCGGC---------GGCGGCCAGGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGC
TGCCGAAGCCGATCGCCGGCCACCCGCAGCCGCAGCCGTCCCCGCCGTCGTCGCCGAGCGAACGGCCGGCGCCTCGCGGC
AGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGA
CCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGTGCCGCGC
TCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCG
CCGTTCCACGCGCAGCAGCAGCCCGCCGCCTAC---GCGTCCTCCACCATGCCGTACGGCGGGCAACAGCG---CGCGGG
CGCGGCGGCGCCGCACATTGGCAGCTCGT---ACCACGGCCACGGC---------------TACCACCAGCAGGGCCCGG
GCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGCTCAATGCCGCGGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGC
AGCGGCGGCCACGACATCCTCTTCCCCAGCGCCGACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCT
CCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGG
AGGACGTGGACGACCTGGCGTTGATGGTGGCCGGCTTCTGGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCG
AACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGCTCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCACACTG
AAG---CAAATGCACCGGCATTGCTCGATCTTAGCCTCTTACGTACTCAGTGGTCTGCTGTGCCCA--GTCGGCCGTTAG
CTAG------GTAGTGTTTGCTTCGTGAGTTCGATCGATCGATCAT-----------------AGTAGAAGATCGT----
----GAAGAAGAGTGGCTT----GTTTCGGTGCCCTAGCTTAGCGGATGCTCACATCCAT--------------------
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>chr2B_1_TraesCS2B01G136100
TGAAAACTAAGGGCCTGTTTGGTTCCAAATAAGTCACCAACTTATAAGTCGAAAAGTGAAAAAAGTGACTTATTTTGCCA
AACAGACCCGACTTATAAGTCACCCCAACTTATAAGTCATAAGTTGCTCCACCCCCAACTTAAAACTTATAAGTGACCCT
CTTTTGCGTGGGTCCCATCACCTGCATGATGTTGATTGGTGTGGAAAGGTGTGTCAGGTGACTTATAAGTCAGGTGACAA
CCAAACATGCGTGACTTATAAGTCACTGGTTTTAAGTCAGGTGACTTATTGAAACCAAACAGGCCCTAAGAGTAGAACAT
TCTAACTTCCAACTGTTATTTTTCTAGCAACACATACACA--CACA--TATATAGCTATATGTTTGACCGGCACAACATT
---CCCCTCTTCTCTTTGGTCCTAAGGTTAGGGCACACAAATCCAAACACAAGGTGCATACATACAAACTCGCAAACTTG
GAGTGAGCTTTCCATTCCCTCCTTTTACTCCTAGAATTAGGCCCTGTTTGGTTCATAAGTCCTAGGACCTTTTTTAGTCC
CAACTTATAAGTCTCAAGTCCCTAAAAAGTCCCTACCTGTTTGGTTCCTGGGACTTATAAGTCCATATAAGACCATATTA
CAACTATAAGTACCTATAAGTCCCTCCTTGAGAGTCTTATTTCATAAGTCCCAAACGGCCACTTTAAGTCCCTATAAGTT
CCTCCTGTTTGGTTTAGATGGGACTTATAGAGACTTTTTTAAGTCCCTAAGCCAATAAATCCCTGGAAACAAACACCCTC
TTAAACTAAACAAGAGCAGGTGCAAT-----GCAGCGCATGCATGTCACTCCCCTCC---CCTACCCAAGGTCGCCATCT
CATCCACAGTGCTCTCAGCCTCTCACTCCTTCTAGCTTCTCCCTCCCCCGAGCTCCCCATTTAAATACCATCCTGCCTCC
CTCCATAGTGAGCACTAC---------ACACTAGAAGCTCACAGTCTCAGCAACCACCTCCTCAACC---------TAAG
CTAGCTAGCTCACACCTCAGAGCTCAAGCTAGGCAGGAGCAGTAGTGTAGTAGCCAGCCAGCATCACTTCAGTTG-----
TGCCATGAGCTCTCGCAGCAGCAGCGGC---------GGCGGCCAGGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGC
TGCCGAAGCCGATCGCCGGCCACCCGCAGCCGCAGCCGTCCCCGCCGTCGTCGCCGAGCGAACGGCCGGCGCCTCGCGGC
AGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGA
CCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGTGCCGCGC
TCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCG
CCGTTCCACGCGCAGCAGCAGCCCGCCGCCTAC---GCGTCCTCCACCATGCCGTACGGCGGGCAACAGCG---CGCGGG
CGCGGCGGCGCCGCACATTGGCAGCTCGT---ACCACGGCCACGGC---------------TACCACCAGCAGGGCCCGG
GCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGCTCAATGCCGCGGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGC
AGCGGCGGCCACGACATCCTCTTCCCCAGCGCCGACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCT
CCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGG
AGGACGTGGACGACCTGGCGTTGATGGTGGCCGGCTTCTGGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCG
AACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGCTCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCACACTG
AAG---CAAATGCACCGGCATTGCTCGATCTTAGCCTCTTACGTACTCAGTGGTCTGCTGTGCCCA--GTCGGCCGTTAG
CTAG------GTAGTGTTTGCTTCGTGAGTTCGATCGATCGATCAT-----------------AGTAGAAGATCGT----
----GAAGAAGAGTGGCTT----GTTTCGGTGCCCTAGCTTAGCGGATGCTCACATCCATGTACTTAGGCTCTTTCAATT
AGCAGCACTATTACTACGTACTACTACTAGTAGTAGTAAGTTTTCATGCATGCACGAGTGACATGCTTACTTTTTACTGT
ATCTC--TCTAAGCATATTACAGTCTCTCTCTAATTAGTTAGTAGTCCTGCGGAATTAAAGTGGCGGATCGAGAGTACTC
GATCGAGAGGCTCGAGAATGTAGTACGCA-------------------CCTTGAAAGTTTCAGTTTTGGATTGTAGTTTT
GTTGGATTCAGTTTT-------GGAGGAACATGTCAA-GTACGTACTCTCCTACGTACTTATACTCTTTTTTTTTTTTTG
CATCGAACGTACTTATACTTACCTGAAGGAAGAAGATAAGGGGAATAGTACACGGACCACGTACAAGACGTAGTACTGCG
CCTTGACAGTTCAACGGAAAGGTACATGTTCACGGACAAGTGTCAAGCAGGCCACCTCCTTTTTTT-CTTGGG-------
TCGCCAGGTACTTGGTGCTGATTCTAGGGTACGTCACGGCCAGATCCATCCATCATGGCCATTGTCTG-AAATGTATCCT
CTTCTGATGTAAATGGCAAATAAATGGTGTCCGCAAGTCCCGTTTAGTTAGCTTTACTTAGCTTCGTAGTTCATTTTTCT
GGAAAAAAAACAAAATTTTAAACGGTTAGATTACATAGTGGGTTTAAACGGGATTAAACGGGACCGGGTTGACATCCCTG
CAGCAGGTGCAAGGCTTGTATATAAACACATTCTTTGCTCTGTAGCTTTGTTTGGATATGTTGATAATCTTATGGGATGG
GAAATGTTCTTATTAATCACTAGTAATACAGTACAATACACAAACGCGTGTAACCATTCGACTTTATTGAATGATTAAGC
AAAGTATATCACCCAATTAAGCAATGCATGTAACCCTAGTTCAAGTCTTAAGCTTGGAAAGGATGCTCGCATTTTCTTGG
ATTTACCACACTTTCTGGCCATAATCATACACTGTGAGATGGCATTTCCATCGACTAC
>chr2A_306
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-----------------------------------------------------------------CTAAGAGTAGAACAT
TCTTACTTCCAAGTGTTATTTTTCTAGCAACACATACACA--CACACATATATAGCTATATGTTTGACTGACACAACATT
---CTCCTCATCTCTTTGGTCCTAAGATTAGGGCACACAAATCCAAACACAAGGTGCATACATACAAACTTGCAGTGAGC
TTTCCA---TTCCATTCCCTCCTTTTACTCCTAGAATTAAACAAG-----------------------------------
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-------------------------T-----GCAGCGCATGCATGTCCCTCCCCTCCTCCCCTACC-----TCGCCATCT
CATCCACAGTGCTCTCA--------CTCCTTCTAGCTTCTCCCTCCTCCGAGCTCCCCATTTAAATACCACCCTGCCTCC
CTCCATAGTGAGCACTAC---------ACACTAGAAGCTCACAGTCTCAGCAACCACCTCCTCAACC---------TAAG
CTAGCTAGCTCACACCTCAGAGCTCAAGCTAGGCGGGAGCAGTAGTATAGTAGCCAGCCAACCTCACTTCACTTC-----
TGCCATGAGCTCTCGCAGCAGCAGCGGC---------GGCGGCGGTGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGC
TGCCGAAGCCGATCGCCGGTCACCCGCAGCCGCAGCCGTCCCCGCCGTCGTCGCCGAGCGAGCGGCCGGCGGCGCGCGGC
AGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGA
CCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGC
TCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCG
CCGTTCCACGCGCAGCACCAGCCCGCCGCCTACGCCGCGTCCTCGGCCATGCCGTACGGCGGCCAGCAGCAGCACGCGGG
CGCGGGGCCGCCGCACATTGGCAGCTCGTACCACCACGGCCACGGC---------------TACCACCAGCAGGGCCCGG
GCGAGTGT------------TCCATGCCGGTGCCCAGTGCCGCGGATCACGGCGCCAGCGGCCCGATGGACGTGCGCGGC
AGCAGCGGCCACGACTTCCTCTTCCCCAGCGCCGACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCT
CCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGG
AGGACGTGGACGACCTGGCGACGATGGTGGCCGGCTTCTGGGGCGGCGCCGACGCGCCGT--------------------
-ACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGCTCGGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTG
AAACGGAC---GCGCTGGCATTGC----TCTTAGCCTCTTACGTACTCAGTGGTCTGCTGTGCCCACCGTCGGCCATTAG
CTAG------GTAGTGTTTGCTTCGTGAGTTCGATCGATCGATCAT-----------------AGTAGAAGATCGT----
----GAAGAAGAGTGGCTTTGTTGTTTCGGTGCCCTAGCTTAGCGGATGCTCACATCCATGTACTTAGGTTCTTTCAATT
AGCAGCACTATTACTACGTACTA---CTAGTACTAGTAAGTTTTCATGCATGCACGAGTGACATGCTTAAGTTATC----
-TCTC--TCTAAAATTATTACAGCCTCTCTCTAATTAGTTAGT---CGTGTGGAATTAAAGTGGCGGATCGAGAGTACTC
GA----GAGGCCCGGGAATGTAGTACGCACACGCACACTGTTGTTGATCCTTGAAAGCTTCAGTTTTGGGTTGTAGTTTT
GTTTGATTCAGATAGGCCGGCCGGAGGAACATGTCAAAGTACGTACTCTCCTACGTACTTA-------------------
---------------------CCTCAAGGAAGAAGATAAGGGAAATAGTACACGGACCACGTACTAGACGTAGTACTACC
CATTGACAGTTCAACGGAAAGGTAGATGTTCA-GGACAAGTGTCAAGCAGGCGACCTCCTTTTTTTTCTTGGGTCGCCAC
TCGCCAGGTACTTGGTGCTGATTCTAGGGTACGTCACG------------------------------------------
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>chr2D_306
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-----------------------------------------------------------------CTAAGAGTAGAACAT
TCTAACTTCCAAGTGTTA-TTTTCTAGCAACACATACACAGACACATATATATAGCTATATGTTTGACTGGCACAACATT
CTCCTCCTCATCTCTTTGGTCCTAAGGTTAGGGCACACAAATCCAAACACAAGGTGCATACATACAAACATGCAGTGAGC
TTTCCA---TTCCATTCCCTCCTTTTACTCCTAGAATTAAACAAG-----------------------------------
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-------------------------TGTACTGCAGCGCATGCATGTCACTCCCCTCC---CCTATC-----ACGCCATCT
CATCCACAGTGCTCTCA--------CTC---CTAGCTTCTCCCTCCTCCGAGCTCCCCATTTAAATACCACCCTGCCTCC
CTCCATAGTGAGCACTACCCACACTACACACTAGAAGCTCACAGTCTCAGCAACCACCCCCTCAACCTCCTCAACCTAAG
CTAGCTAGCTCACACCTCACAGCGCAAGCTAGGCTGGAGCAGTAGTATAGTAGCCAGCCAGCCTCACTTCACTTCAGTTC
TGCCATGAGCATCCGCAGCAGCAGCGGCGGCAGCGGCGGCGGCCATGCCTCCCAGATGATGGCGTTCTCGGAGCATTCGC
TGCCGAAGCCGATCGCCGGCCACCCGCAGCCGCAGCCGTCCCCGCCGTCGTCTCCGAGCGAGAGGCCGGCGCCGCGTGGC
AGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCGGAGATACGCGA
CCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGC
TCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCG
CCGTTCCACGCGCAGCAGCAGCCCGCCGCCTACGC---GTCCTCGACCATGCCGTACGCCGGCCAGCAGCAC--------
----GCGGCGCCGCACATTGGCAGCTCGTACCACCACGGCCACGGCCACGGCGGCCTCGGCTACCACCAGCAGGGCCCGG
GCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGCCCAATGCCGCCGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGC
AGCAGCGGCCACGACTTCCTCTTCCCCAGCGCCGACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCT
CCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGG
AGGACGTGGACGACCTGGCGTCCATGGTGGCCGGCTTCTGGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCG
AACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGCTCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTG
AAACAACAAATGCACCAGCCAGCATTGCT----------------CTCAGTGCTCTGCTGTGATCACCATCGATCGACCA
TAGCTAGGTAGTAGTGTTTGTTTGGAGAGTTGGATCGATCGATCAGTCACAGTACGTGGCAGCAGTAGAAGGTCGATCGA
CGAAGAAGAAGAGTGGCTT----GTTTGGGTGCCCTAGCTTAGCGGATGCTCACATCCATGTACTTAGGCTCTTTCATTT
AGCAGCACTATTACTACGTACCAGTACTAGTAAC------TTTTCATGCATGCACGAGTGACATGCTTAAGTTATC----
-TCTCTCTCTAAACTTATTACAGTCTCTCTCTAATTAGTTAGT---CCTGTGGAATTAAAGTGGCGGATCGAGAGTACTC
GA----GAGGCTCGAGAATGTAGTACGCAAACGCATACTGTTGTTGATCCTTGAAAGTTTCAGTTTTGGATTGTAGTTTT
GTTGGATTCAGATAGGCCGGCCGGAGGAACATGTCAA-GTACGTACTCTCCTACGTACTTA-------------------
---------------------CCTGAAGGGAGAAGATAAGGGGAATAGTACACGGACCACGTACTAAT-GTGGTACTACG
CCTTGACAGTTCAACGGAAAGGTAGATGTTCACGGACAAGTGTCAAGCAGGCGACCTCCTTTTTTTTCTTGGG-------
TCGCCAGGTACTTGGTGCTGATTCTAGGGTACGTCACGGTCAGACCCATCCATCAGAGGGCCATGCACAAAATGTATCCT
CTTCTATG------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
------------S-------------------------------------------------------S-----------
----S----S------------------------------------------------------------S---SSSSSS
SSSSS-SSS------------------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------SSSSS---------
-----------------SSSSSSSS---------------------S-----------------------S---------
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----------------------------------S-----------S---------------S--------S--S-----
---------------------------------------------S----------------------------------
-------------------------------------------------------------S-----------S------
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------------------------------------------------------------------------S-------
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--------------------------------------------S-----------------S--S----S---------
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---------------------------------S----------------------------------------------
---S-----------S----------------------------------------------------------------
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---------------------S----------------------------------------------------------
--------------------------------------------------------------------------S-----
--S----------------------S-S----------------------------------------------------
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-----------------------S--------S------------------------------------SS--S-SSSSS
S-----------S-S----------------------------SSS----S-----------------------------
--SSSS--------------------------------------------------------------------------
-----------S-SS----------------------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-------------------------------------------S------------S--
------------------------S---------------------------S---------------------------
---------------------------------------S----S----------SS-SSSSSSS-SS------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_28
--------AAGGGCCTGTTTGGTTCCAA----------------------------------------------------
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>reverse_2075
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--------------------------------------------------------------------------ACACTG
AAGCAAATGCACCG------------------------------------------------------------------
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>forward_1087
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---------------------------GCTAGGCAGGAGCAGTAGTG---------------------------------
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>reverse_3011
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--------------------------------------------------GGATTAAACGGGACCGGGTT----------
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