>input_sequence_58029
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-----------------------------------------------ATGGGGCCGGCACGCTGCGCCAGTGGCCGCCTC
CTGCTCCTCTTCCTGATCATGCTCGCCGTGGCAGACTTCGGGGCGGCGCAGCAGAACCAGAACCCGCCTCCGCCGGGCGG
GCCGTACTACACGACCAACTTCAGCCCGTCCATGGCCATCGTCATCGTCGTCCTCATCGCCGC-----------------
-CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCA
CGCTCCCCGTCGGCGCCGC---------------------------------------------------GGCC---GCA
CGCTCGCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGT---CCTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAA
GGAGCACAAGGCTGTCAAGGGCGCGCTCGAGTGCGCCGTGTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTGC
TGCCCAAGTGCTCCCACG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------TCTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAA
CCTCGTCCCCGATGCCGAC---ACCGGCGCTCCGGCCGC-----------------CGGCGATCAGCCGGCCGAGCTGTC
GAGCGTCCATCCCGCC----------CCCCAGCCGCAGGAATT---------------ACCAGCGTCTGAGACGGAGGCG
GCGCACGCCGTCGTCATCGACGTGGAGGAGAGCGAGGACGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCAT
CGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCCGCGGGCCCG---CGCGCTTCCCGCGCTCGCACTCGACAGGCC
ACTCGCTCGCCACGCGAGCCA------------GCACGGGCGCCAGCGCCG-------GCGCCGAGAGGTTCACGCTGCG
GCTGCCGGAGAGCGTGCTCCGGGAGGTCGTCGCGGCCGGCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACCGCCG
GCCGCCAGGGCAGCATGCGCCGCGCCCTCCGACTAGGCGCCGGCGGCG--------GCGACGGCAGCAGCCGCGGCGGGA
GGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCGTTCCTGTCGCGGACCTTCTCCGCGGCGTGGGGGTCGAGGTCG
ACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--
------GACCAGGCGTGCGCGGCTGGACAACGTGTTTAG-----------------------------------------
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>chr5B_1_TraesCS5B01G245800
ACACCAGGATCGGCATTCAACATGATGAAAATATGTATCTTATTTTAAAAAAAGATACTGTAGTTTGAGTGGTCTATTCA
CGTTATCTCACTGTATTTCCTTGGTGTATTGTGCTGTATGCATCTATTTTCGTAGGGACGTCTTCTTTTTATTGAGAAGT
AGGCACATTTCTAATTTCAGTGGGATAATAAATATTATCTAGGTCAATATTCCTCAGGGCAGCTGGCTCCGACAGGTGAG
CGGTCGCACGCCGGTGACTCGTTTCGATGGCGGCAGTGGTCGTTCGGTGGTCTCAGAATTTTGTTGTAATTTTTATACTA
CTTTGATAGGGGAGCGAGGGTGGGGTGCTTCGTACTTCTGTTGAATTTTGAATATATCTGGATCATTTTTTTTTGGAAAA
ATATATATTGAAATATAAAACAAGCATGTGGCTTGTGGTGCCCACAACCATGAACCTTGGGTCCGGCTTATGATTATGCA
TTCAGTTTTTTTTTTCTTGTAAAATAGCATGTAAAGTAGGAGTAGTTAGGAAGGTTCATAAAACTAATAAGGTTACAAAC
ATGGGCTTTGCTTTAGGAAACCAGGTGTGGTCACTGTGCCCCCGTGCAAAGC----------TGTACACTTAATTGTGTT
ATTTGACC-AAAGCATACGACTCCCGCATGAAAGTGTGAAATTGGCACTATTAAA-------------------------
AAAAAATACTCGTAAAAAGATGC---AGAGACACTCAAAACCAGCACTCCATTTGC-------TAGGTGCAGCAATGAAT
TTGCGGTGGACCTAGCAATTCCGCAGCTTTCC--CTCTTCA-------CACACCCACAACATTAGTAGTACAGTGTACTC
AAGA---------AAAAAAAAA-------------CGGCCGTCATCGACCCCTTCCTCCTCCGTAAGTC-CGTATATAAA
CGCGCTCCACTCCGCACCGTTTGCCGGACCTCCCATTTCACAACTCCAATTGTCCCATAAAGCGTTC---AGTTCCCCTC
CGCTCGATCGATCATCAGCGCCACTCAACGGT------AGTAGATCGATGGGGCCGGCACGCTGCGCCAGTGGCCGCCTC
CTGCTCCTCTTCCTGATCATGCTCGCCGTGGCAGACTTCGGGGCGGCGCAGCAGAACCAGAACCCGCCTCCGCCGGGCGG
GCCGTACTACACGACCAACTTCAGCCCGTCCATGGCCATCGTCATCGTCGTCCTCATCGCCGC-----------------
-CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCA
CGCTCCCCGTCGGCGCCGC---------------------------------------------------GGCC---GCA
CGCTCGCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGT---CCTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAA
GGAGCACAAGGCTGTCAAGGGCGCGCTCGAGTGCGCCGTGTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTGC
TGCCCAAGTGCTCCCACG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------TCTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAA
CCTCGTCCCCGATGCCGAC---ACCGGCGCTCCGGCCGC-----------------CGGCGATCAGCCGGCCGAGCTGTC
GAGCGTCCATCCCGCC----------CCCCAGCCGCAGGAATT---------------ACCAGCGTCTGAGACGGAGGCG
GCGCACGCCGTCGTCATCGACGTGGAGGAGAGCGAGGACGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCAT
CGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCCGCGGGCCCG---CGCGCTTCCCGCGCTCGCACTCGACAGGCC
ACTCGCTCGCCACGCGAGCCA------------GCACGGGCGCCAGCGCCG-------GCGCCGAGAGGTTCACGCTGCG
GCTGCCGGAGAGCGTGCTCCGGGAGGTCGTCGCGGCCGGCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACCGCCG
GCCGCCAGGGCAGCATGCGCCGCGCCCTCCGACTAGGCGCCGGCGGCG--------GCGACGGCAGCAGCCGCGGCGGGA
GGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCGTTCCTGTCGCGGACCTTCTCCGCGGCGTGGGGGTCGAGGTCG
ACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--
------GACCAGGCGTGCGCGGCTGGACAACGTGTTTAGTTGACCGGGGCCGTCCGCCGT-------GGTCAGACGGTGC
GTGCTTGCGTGCCGC-TTGC-----TGGGAAGGAAACGGCTGTTGCTTTCCGTTTG-----TCCCGGTGGAATTTCTCTG
CTTGGTGGTGGATCTTTTGTACGTAGGTCATTCATTTTTCTTTT-----C----TTCAAAGAAACATGTACATAAAAATG
GTGTTTGGTTAATCAAG-----GGAGATATTATTATTCACAAAAAGATTTTTTTTGCGGGTGACACAAAAAAG-ATATTA
AAGTAGATATTCTTGTCAATTTTATCTGGT---TTCGGC-----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------ATATGGTGCCATCTTCTTCCAGAG-
AGAGTAGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CTAGTGCATGTCGATCATATCATCACATGGG-CTTGTACTTTTGCCTTTTGCTTTGT
GCATTTCAGAATCATGTGACATCGAGAAGAACCGGTGGACTAATCCAAA------CACACATGTTTTTCATATCATATTC
ACACAGTTGAGTTATTGTATCCTATCTTTTTTT-----------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------CTTGGTGCAGGGTAGCATATATGCGTTGCTT
TGCATAGTGCGTCAGACGGTGCATCAGCAGATGCGACTGATCAGTGGTTTATCAT----CAGGCCTATGAAGTGCCAACA
TTGGATATTTTGATGTTGATATC--TCCATTTGCATATGAGCAAGAGTTCGACACGTTTGGGTTTGGCAACTTGGG-ACA
CCACCGTCTCGG----CCTGCCTTGCAAGCAAAAAGCGACATATGGTGTTTGCTTGAAACACAAGGCAAGGAAATAAAAC
ACACGAGCCATTGAGTGTCTAGATAAACAAACAATCTTACTAAAGCACATCTAGATGTGTCATAACCATTGCACATCTAA
TTTTATGTCATTAATTTTACGTGGAGATAAGCGTGATTGAATACAAGGATCTGACGCCGGGATGACGCGAGGTGTCGACG
GTGGCTGTAGGGTCGTTCCGCTGCGCATGTGGGGCTGCGGCGATGTGCTGGCCTTCGGCGTGTGCCAGCCGAACGGCGAT
GCTACGTTTTTCGGTTGGTGG
>chr5D_555
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------ACAAAC
ATGAGTTTTGCTTTAGGGAACCGGTTGGGGTCACTCTGCCCCCGTGCACTTCAAAAAGTTGTTGCACACTTAATTCTGTC
ATTTGACCTAAAGCATATGACCCCCGCATGAAAGTATGAAGTTGGCACCATTCAAGATGTAAAAGACAAATGAGTATTCA
AAACAAAACTCGTAAAAATAGGC---AGAGACACTCAAAACCAGCACTACTCCATTCGCTACGTGCGTGCAGCAATGAAT
TCGCGGTGGACCTAGCAACTCCGCACCCTTCCCGCTCCACAGTCCACACACACCAAGAACAACACC---------TACTC
AAAA---------AAAAAAAAGTACAACAACAAGCCGGCCGTCATCCACCTCTGCCTTCTTCTCATCTCACGTATATAAA
CGCGCTGCACTCGGCACCGTT-GCCGGACCTCCCAGTTCACAACTCCATTTCTCCCATAAAGCGTC----AGCTCCCCTC
CGCCCGATCGATCATTAGCGCCACTCAGCAGAG-----AGCAAATCGATGGGGCCGGCACGCTGCGCCAGTGGCCGCCTC
TGGCTCC---TCCTCCTGGCGCTCGCCGTCGCAGACTTCACGGCGGCGCAGCAGAACCAGAACCCGCCCCCGCCGGGCGG
GCAGTACTACACG---AACTTCAGCCCGTCCATGGCCATCGTCATCGTCGTCCTCATCGCCGC-----------------
-CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCA
CGCTCCCGCTCGGCGCCG------------------------------------------------------CGGCCGCG
CGCTCGCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGT---GCTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAA
GGAGCACAAGGCCGTCAAGGGCGCGCTCGAGTGCGCCGTCTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCC
TGCCCAAGTGCTCCCACG--------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------TCTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAA
CCTCGTCCCCGACGG---CGACGCCGACGCCCCGGCCGC-----------------CGGCGATCAGCCGGCCGAGCTGTC
GAGCGTCCATCCCGCC----------CCGCAGCCGCAGGAATT---------------ACCGGCGCCTGAGGCGGAGGCG
GCGCACGCCGTCGTCATCGACGTGGAGGAGAGCGAGGACGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCAT
CGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCCGCGGGCCGG---CGCGCTTCCCGCGCTCGCACTCCACAGGCC
ACTCGCTCGCCACGCGGGCCA------------GCACCGGCGCC------G-------GCGCCGAGAGGTTCACGCTGCG
GCTGCCCGAGGGCGTGCTCCGGGAGGTGGTCGCGGCCGGCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACCGCCG
GCCGCCAGGGCAGCATGCGCCGTGCCCTCCGACTGGGCGCCGGCGGCG--------GCGACGGGAGCAGCCGCGGCGGGA
GGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCGTTCCTGTCGCGGACCTTCTCCGCGGCGTGGGGGTCGAGGTCG
ACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--
------GACCAGGCGTGCGCGGCTGGGCAGCGTGTTTAGTTTGACCGGG------GCCGT-------GGTCAAACGGTGC
GTGCTTGCGTGCCGCTTTGC-----TGGGAAGGAAACGGCTGTTGCTTTCCGTTTCGATTCTCCCGGTGGAATTTCTCTG
CTTGGTGGTGGATTTTTTGTAG---GGTCATTCATTTTTCTTTT-----C----TTCAA-GAAACATGTACATAAAATG-
----TTGTTTGGTTAAA-----GTAGATATTATTCA---------------------------CACACAAAAC---ATTA
AAGGAGACATTCCTATCAATTTTATCCGGT---TTGTAGCATATGGTGTTTTTTTTTAAATGATCATGTCTATTATAAAT
ATGCACCATGAACCACCGAACGGCCACTACCGCCGGCAGAATGAGCCGACGACGCTCCGATGTCACGGCTTCCATATCGA
AGCCAGCCTGACCTTGTTGATAGGGAAACGTTTACTACGGTCGACCGGCCGAGCGTTCGGCCGGTCGCACCGCTCGTTCT
CGCTGCAGGCCCACCTTATCCCTTCATGGGTGTCTTCTTCCTCAATTTGCCGCCTCTCCTTTTCCCCTTCTTCGCCGCTA
TATATCCATGCGCTAGCTACAACAGCTTCACGGCCTGCTCGGTGCCCAACCTCGCCCTCCACCGTGGCCGACTAGCCCCT
CTCACATCCGTCCCTCTCTTCAATTTTTGCATCCCCACTTGCTCCCTGCGGCCATGGCGCCCAACCCCGCTGCCATGGAA
GCCATGGTTGTGCGCCTTCGACCGTCGTCGTCCTCCTCGTCACGGCGACGCCATGGCCGTGCTGCAAGCAGCCGCCATAG
TGGAACCATGTTTGCTGCATACCCCGGAGGTACCCATGCATCACCGGAGACGGTTTTTGCTGCAACCGACGGTCTGAATC
ACTGGAACCGGCGAGTGATCATGCTGGAACCATAGGGAGAGGGCGCTCGCTGGAGTTGTCCTGCGAGGGAAGTTGTGCCC
TGTATGCAAGAAAAGCTACAACCAACATGCGGCGGAGCTAGAACCAACGGTGGAAAATGTTACAACCGGCTGTTAGTTTT
GCTGGAACTAGCTAGGCGGGGGCTGCGCCCAACGAGTGAGAGAAGCTGTAACCGACAGCGAAAAATGCTACAACCTGTGG
CCTAGGTAGATTCAACCGGCAACATAAAAAGTTTCAAAGAACAACGAAGAAGCTGGTCGTCGGGGCACTTCCGCAACATA
AGCTGCAACTGGCGGCCTATAAAGCTACAACCGGCGACGGGAAAGCTTCAACCAAAAATGCGGAGAAGCTGGTGGTCAGG
GCACCGAGCACAAAAAAGCTGCAACCACGGCCTAGAAAGCTTCAACCGGCGACTGGGAAAGCTTCAACCGGCTAATGGAG
ATTGCAGCGAGGCGAGCTGGGAACTTGGTGCCCATGGTGACCATGGCGGGTGAGGAGGAGATGCAGCTGTGATGGCGGCC
GGCGGTGACAACGCCGGGTGGTTGGCGAGGACGGGGCCGAGGACGAGCAAGGCGGCGCGGGGTAGCTGGCGAGCGCGGCG
TCGTACAAGGCGAGGCGGAACGAAGAAGACGAACGCGAGGGGATCCAATCGAACGGTCGCGTGTGGCCGAATCGAGCGGC
TGGGGGCAGACCGGCCGAAATTTCGGCCGGCGCGCCGGCGCCTAACAGCCGCCTTGTCGATAACAGCTAAGAAGTCTTCG
TACACGTACCCCTAGGGACTAGCGCCTCTGAGCTGCAGTCGTCGCCGTTGAACTGATCTAAACAACCTGACACCAAATAT
CATCGTTGCGAATGCACGACAAAAAAACCTAATCTCGCTGCCCCTAAGAGCCGGCACAAATCTACGTCGAAGCTCCGTCT
AATTTGTCGCGATGAACGAACTCGAGGAGAATTGAAGCCTGAAAGACTGACTCGAAGAAAAAGCGTCGCCACCCGTCCAA
ACGATGGCCCTGCGAGGACTAAAACCCTACATACCTATTAGCCGAAGCCGAGGCAGCAGAAATTCCCTCCTCGCCCGGCT
GCCGAAGCGGTAGGCGGAGGGGAGGCTAATCCACGGACTCGTCAGCGAAGTTGTTATATAGTGCTATTTTCTTCGAGAAA
AGAGTAGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CTAGTGCTTGTCGATCATATCATCACATGGGGCTTGTACTTTTGCCTTTTGCTTTGT
GCATCTGAGAATCATGTGACATGGACAAGAACCGGTGGACTAATCCAAC------CACACTT-GTTTTCATATCATATTC
ACACAGTTGAGTTATTGTATCCTATCTTTTTTT-----------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------CTTGGTGCAGGGCAGCATATATGCGTTGCTT
TGCATAGTGCGTCAGACGGTGCATCAGCAGATGCGACTGGTCAGTGGTTTATCACCGGACAGACCTATGAAGTGCCAACG
TTGGATATTTTGATGTTGATAT--CTCCATCTGCATATGAGCAAGAATTCGACACGTTTGGGTTTGGCAACTTGGG-ACA
CCACCGTCTCGGCTGCCCTGCCTTGCAAGCAAAAAGCGACATATGGTGCTTGCTTGAAAAACAAGGCAAGGAAATAAAAC
ACACGAGCCATTGAGTGTCTAGATAAACAAA-------------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>chr5A_557
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------AAAC
ATGGGCTTTGCTTTAGGAAACCGGGTGGGGTCACTCTGCCCCCATGCACTTCAAAAGGTTGTTGCACACTTCATTCTGTC
ATTTGACC-AAAGCATATGACCCCCGCATGAAAGTATGAAATTGGCACCATTCAAGATGTAAAAGACAAAGGAGCATTCA
AAACAAAACTCGGTAAAATAGGCAGTAGAGACACTCAAAACCAGCACTACTCCATTCGCTACGTACGTGCAGCAATGAAT
TCGCGGTGGACCTAGCAATTCCCCACCCTTCCCGCTCCACA-------CACACCTACAACAACATC---------TCCTC
CACACACACAAAAAAAAACGAGTACAGCAACAAGCCGGCCGTCATCCACCTCGACCCGCCTTCT-TCTCACGTATATAAA
CGCGCTGCACTCCGCACCGTT-GCCGG-CCTCCCAGTTCACAACTCCGATCGTCCCATAAAGCGTCC---AGCT----TC
CCTCCGCTAGATCATCAGCGCCACTCAGCAGAGGCACGAGCAGATCGATGGGGCCGGCACGCTGCGCCGATGGCCGCCGA
TGGCTCCTCCTCCTGATCGTGCTCGCCGTGGCAGACTTCGGGGCGGCGCAGCAGAACCAGAACCCGCCGCCGCCGGGCGG
GCAGTACTACACC---AACTTCAGCCCGTCCATGGCGATCGTCATCGTCGTCCTCATCGCCGC-----------------
-CTTCTTCTTCCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCT--------ACGGCGACAGCCCCTACTCGGCCACCA
CGCTCCCGCTCGGCGCCGG---------------------------------------------------CGCGGCGGCG
CGCTCGCGGCGGCAGCAGCGCGGGCTCGACCCGGCCGT---CCTGGAGACCTTCCCCACCATGGCCTACGCCGACGTCAA
GGAGCACAAGGCCGTCAAGGGCGCGCTCGAGTGCGCCGTCTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCC
TGCCCAAGTGCTCCCACG--------------------------------------------------------------
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-------------TCTTCCACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTCACCTGCCCGGTCTGCCGCGCCAA
CCTCGTCCCCGACGCCGACGACGCCGACGCCCCGGCCGC-----------------CGGCGATCAGCCGGCCGAGCTGTC
GGGCGTCCATCCCGCC----------CCGCAGCCGCAGGAATT---------------GCCGGCGCCTGAGGCGGAGGCG
GCGCATGCCGTCGTCATCGACGTGGAGGAGAGCGAGGACGAGCGGATCATACGGGAGGAGACCGACGAGCTGACGCGCAT
CGGCAGCCTGAAGCGCGCGCTGCGGTCCAAGTCCAGCCGCGGGCCCG---CGCGCTTCCCGCGCTCGCACTCCACAGGCC
ACTCGCTCGCCACGCGAGCCAGCA------CCGGCACCGGCGCC------G-------GCGCCGAGAGGTTCACGCTGCG
GCTGCCGGAGAGCGTGCTCCGGGAGGTGGTCGCGGCCGGCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACGGCCG
GCCGCCAGGGCAGCATGCGCCGCGCCCTCCGGCTAGGCGGCGGCGGCG--------GCGACGGGAGCAGCCGCGGCGGGA
GGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCATCGTTCCTGTCGCGGACCTTCTCGGCGGCGTGGGGGTCGAGGTCG
ACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--
------GACCAGGCGTGCGCGGCTGGGCAACGTGTTTAGTTTGACCCGG------GCCGT-------GGTCAAACGGTGC
GTGCTTGCGTGCCGCTTGCTGGGAATGGGAAGAAAACGGCCGTTGCTTTCCGTTTG-----TCCCGGTGGAACTTCTCTG
CTTGGTGGTGGATTTTTTGTAG---GGTCATTCATTTTTCTTTT-----CTTCATTCAA-GAAACATGTACATAAAATG-
----GTGTTTGGTTAAATTAAAGTAGATATTATATC---------------------------CACAAAAAAG-AGATTA
AAGGAGATATTCCTGTCAATTTTATCTGGTGGTTGTGGC-----------------------------------------
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-------------------------------------------------------ATACGGTGCTATATTCGTCGAGAAA
AGAGTAGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CTAGTGCATGTGGATCATATCATCACATGGTGCTTGCA-------CTTTTGCTTTGT
GCATCTGAGAATCATGTGACATGAACAAGAACCGGTTGACTAATCCAAG------CACACATGTTTTTCATATCATATTC
ACACGGTTGAGTTATTGTAGT-----------------------------------------------------------
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----------------------------------ATCCTATCTTTTCTTCTTGGTGCAGGGCAGCATATATGCGTTGCTT
TGCATAGTGCGTCAGGCGGTGCATCAGCAGACGCGACTGATCAGTGGTTTATCACCAAACAAACCTATGAAGTGCCAACG
TTGGATATTTTGATGTTGATATCTCTCCATCTGCATATGAGCAAGAATTCAACATGTTTCGGTT---------GGGCACA
CCACCGTCTCGG----CCTGCCTTGCAAGCAAAAAACGACATGTGGTGTTTGCTTCATGAACAAGGCAAGAAAATGATAT
GCATGAACCATTGAGTGTCTGAATGAACCAAACA----------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>chr3D_897
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--------------------------------------------------------------------------------
--------------CACCGTTGCCCTAACCTCCCAATTGACAACTCCATTTGTCCCATAATAAAGCGTTAGGCT----CC
CCTCCGCTCCATCATTAGTACTACTCAACAGA------GGTAGATCGATGGGGCCGGCACCCTGCACCAATGGCCTCCTC
ATCGTCC---TCCTCCTCGTGCTCGCCGTGGCCGACTTCGGGTCGGGGCAGCAGAACC---------CGCCTCCGCCAGG
GGCGTACTACACGGCGAAGTTCAGCCCATCCAGGGCCACCGTCATCATCGTCCTAATCGTCATCCTCGTCGCCTTCTTGT
TCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCATCCACAACTGCC--------ATGGCGACACCTCCTACTCGGCCACTA
GACTCCCGATAGGCGCCC------------------------------------------------------CCGCGGCG
CGCCCGCGACGACAGCAGCGCGGGCTCGACCCGGCCGT---CCTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAA
GGAGCACAAGGCCGTCAAGGGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCC
TGCCCAAGTGCTCCCACG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------TCTTCCACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACATGCCCGGTCTGCCGCGCGAA
CCTCGTCCCCGACG------ACACCGACTTTCCGGGCAC-----------------CGGCGGT---------GAGCTGTC
GAGTGTCCATCCCGCT----------TCGCGGCCGCCGCAAGAGGTGC------CACCGTCAGCTTCTGCAACGGAGGCA
GCTCCCACCGTCGTCATCGACGCGGAGGAGAGTGAGGACGAGAGGATCATCCGGGAAGATACGGACGAACTGGCGCGCAT
CGGCAGCCTGAAACGCGCGCTGCGCTCCAAGTCCAGCCGAGCGCCCA---CGCACTTCTCGCGTTCGCACTCGACGGGGC
ACTCGCTCGCTGCGCGAGCCAGCAGCTGCACCGGCACGGGCGCC------G-------GCGTCGAGAGGTTCACGCTGCG
GCTACCCGAGCCGGAGCAC---------------GCGGGCAGACTACGGCGCATGAAGAGCCTCGCCGTGTTCACTGCCG
GCCGCCAGGGCAGCACGTACCGTTCCCTCCGACTAT---------GCG--------GCGACGGCAGCAGCCGCAGCGGGA
CGAGAGTCCGGCTCGGCCAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCGGCGTGGGGGGCGAGGTCC
ACCCAGAGTGCCGAGTTGGACGGGTCGAGCAAGGGCGGGAA----------GCCGGCGGCAAGTCAGTGGAGTGCAAAGA
CCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTAATTTGACC-GG------GCCTTCCGTTGCGGTCAAATGGTG-
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>chr3B_922
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---------------------------------------ACAACTCCATTTGTCCCATATTAAATCGCTAAGCT----CC
CCTCCGCTCGATCATTAGTACTACTCAACAGA------GGTAGATCGATGGGGCCGGCACCCTGCACCAATGGCCTCTTC
ATCGTCC---TCCTCCTCGTGCTCGCCGCGGCCGACTTCGGGTCGGGGCAGCAGAACC---------CGCCTCTGCTAGG
GGCGTACTACACGACGAAGTTCAGCCCATCCAGGGCCACCGTCATCATCGTCCTAATCGTCATCCTCATCGCCTTCTTCT
TCTTGTTCTTCCTCTGCCTCTTCTTGGACTGCATCCACCACTGCTATGGGCCTATGGCCACAACTCCTACTCGGCCACTA
GACTCCCGATAGGCGCCGC---------------------------------------------------CGCAGCT---
CGCCCGCGACGGCATCAGCGCGGGCTCGACCCGGCCGT---CCTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAA
GGAGCACAAGGCCGTCAAGGGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCC
TGCCCAAGTGCTCCCACGTCGAATGCAGATTCTGTGAGCTTATGCACCCGGGCCTCACTATCCTAACGCTCCATTGTTGC
TTTGAGATCTGTGCTACACAACTACCTTATTACATGGAATTTTCTCTTTTTTGTTCCTCTCATATAAAACATGTCTTGAA
CTTCAAACTTTGCAGTACAACATAACTTTGTAACTAGAATGTGAGATAAAACTTTCAGATTTTTTTGTCCGACATAAATA
TGAAAAAAATAAGATTTTTTAATCAAATAAATCTTATTTTGTATATTTATGTTGGACCAAAAAATCTGTAAGTTTTATCC
CACATTCTACATAGAAAGCTTTGTTGTGCTGCAAAGTTGAAAGTACAAAAACATGTTCTATATGAGAGAAACAAAAAAGA
GAAAATTATTTGCACGAATCCTGATGCAGAAATGAGTGGTTGGATAAGGAGTACCCGGGTGCATAGGCTCTAAAACATGT
TTTCGCTCCCACGTCTTCCACCCGGACTGCATCGACACCTGGCTAGCCTCCCACGTCACCTGCCCGGTCTGCCGCGCAAA
CCTCGTCCCCAACG------ACACCGACTTTCCGGCCAC-----------------CGGCGAT---------GAGCTGTC
GAGCGTCCATCCCGCT----------TCGCAGCCGCCGCAAGAAGTGC------CGCCGCCAGATTCTGCAACGGAGGCA
GCACCCACCGTCGTCATCGACGTGGAGGAGAGCGAGGACGAGAGGATCATCCGGGAAGAGACGGACGAACTTGCGCGGAT
CGGCAGCCTGAAACGCGCTCTGCGCTCCAAGTCCAACCGAGCGCCCA---CGCACTTCTCGCGTTCGCACTCGACGGGGC
ACTCGCTCGCTGCGCCAGCCAGCA------TCTGCACCGGCGCC------G-------GCATTGAGAGGTTCACGCTGCG
GCTGCCCAAGCCGGAGCAC---------------GCGGACAGACTACGGCGCATGAAGAGCCTCGTCGCGTTCACTGCCG
GCCGGCAGGGCAGCACGTACCGTTCCCTCCGACTAT---------GCG--------GCGACGGCAGCAGCCGCAGCGGGA
CAAGCGTCCGGCTGGGACAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCGGCGTGGGGGGCGAGGTCC
ACCCGGAGTGCCGAGTTGGGCGGGTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAAGA
CCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTAATTTGACC-GG------GCCTTCCGTTGCGGTCAAATGGTG-
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---------------------
>chr3A_1112
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------------GG
GGCGTACTACACGACGAAGTTCAGCCCATCCAGGGCTACCGTCATCATCGTCCTACTCGTCATCCTCATCGCCTTCTTCT
TCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCATCCACCACTGCT--------ATGGCGACACCTCCTACTCGGCCACCA
GACTCCCGATAGGCGCCGC---------------------------------------------------CGCG---GCG
CGCTCGCGACGACAGCAGCGCGGGCTCGAGCCGGCCGTCGACCTTGAGACCCTCCCGACCATGGCGTACGCCGACGTTAA
GGAGCACAAGGCCGTCAAGGGCGCTCTGGAGTGCGCCGTCTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCC
TGCCCAAGTGCTCCCACGT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CTTCCACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACCTGCCCGGTCTGCCGCGCGAA
CCTCGTCCCCAACG------ACACCGACTTTCCGGCCAC-----------------CGGCGAT---------GAGCTGTC
GAGCGTCCATCCCGCT----------TCGCAGCCGCCGCAAGAAGTGC------CACCGCCAGCTTCTGCAACGGAGGCA
GCACCCACCGTCGTCATCGACGCGGAGGAGAGCGGGGACGAGAGGATCATACGGGAAGAGACGGACGAACTGGCGTGCAT
CGGCAGCCTGAAACGCGCGCTGCGCTCCAAGTCCAGCCGCGCGCCCA---CGCATTTCTCGCGTTCGCACTCGACTGGGC
ACTCGCTCGCTGCGCGAGCCAGCATCTGCACCGGCCCCGGCGCC------G-------GCGTCAAGAGGTTCACGCTGCG
GCTGCCCGAGCCGGAGCAC---------------GCGGGCAGACTACGGCGCATGAAGAGCCTCGTCGCGTTCACTGCCG
GCCGCCAGGGCAGCACGTACCGTTCACTCCGACTAT---------GCGGCGAGCCGGCGACGGCAGCTGCCGCAGCGGCA
CGAGCGGCCGGCTGGGCCAGTCAGGCCGGTGGCCATCTTTCTTGTCGCGGACTTTCTCCGCGGCGTGGGGGGCGAGGTCC
ACCCGGAGTGCCGAGTTGGACGGCTCGAGCAAGGGCGGGAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGACTGCAAAGA
CCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTAATTTGACC-GG------GCCTTCCGTTGCGGTCAAATGGTG-
--------------------------------------------------------------------------------
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>chr6B_1130
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----------------AACTTCAACCCGTCCATGGCGGTCATAATCGTCGTGCTCGTCACCGC-----------------
-CTTCTTCTTCCTCGGGTTCTTCTCGATCTACATCCGGCGCTGCG--------CGGGCGGG-------------------
-----CCGCTCGGCGGGCCCGGCGAGGACCTCAGCGTGCCCGGCGCCAGGCCGGGCGGCCTCACGTTCCTCACCGCCGCG
CGGTCGAGGAGGAT---GAGAGGGCTGGACCCCGCCGC---GCTCGAGGCCCTCCCTACCATGGCGTACGCCGACGTCAA
GGAGCACAAGGTCGGCAAGGGCGAGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGATGACACGCTCCGACTCC
TGCCCAAGTGCTCGCACGCG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------TTCCACGCGGACTGCATCGACGCCTGGCTCGCGTCGCACGTCACCTGCCCGGTCTGCCGCGCGAA
CCTTGTCCCCGGCGCCGAT---------GCTCCGGCGGCGTCCGGTGCCGCTGCGTCGGCGAT---------GCCGGAGC
CGGATATACTAGCCGCGACGTCGGTGCCGCAGCCGGCGCAGGAAACGACCACGGCGCCGCCAGAGCAAGTGACGGTAGTG
ATCACCGATGCT---------GCCGAGGAGACGGAGGAGGAGAGGGTCAGGAGGGAGGAGGCGGCCGAGCTGGTGCGCAT
CGGCAGCGTGAAGCGCGCGCTGCGCAGCAAGTCCGGCCGGAGTCCCGCCGCGCAGTTCCCGCGCTCGCACACCACGGGGC
ACTCGCTCGCGG-------------------------------CAGCGCCGGCCGAGAGCGCGGAGCGGTACACGCTGAG
GCTGCCGGAGCACGTCCTCCGGGAGGTCGTCGCGGCGGGCAAGCTGCGGCGCACGAAGAGCCT-----------------
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>chr5A_2013
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------------TGGGCCAGTCCGGGCGGTGGCCGTCGTTCCTGTCGCGGACCTTCTCGGCGACGTGGGGGTCGAGGTCA
ACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGAAAAGCCGGCCGGCGCCAGCGGCAAGTCAGTGGAGTGCAAC--
------GACCAGGCGTGCGCGGCTGGGCAACGTGTCTAGTTTGACC-GG------GCCGT-------GGTCAAACGGTGC
GTGCTTGCGCGCCGCTTGCTGGGAATGGGAAGGAAACGGCCGTTGCTTTCCGTTTG-----CCCCGGTGGAAATTCTCTG
CTCGGTGGTGGATTTTTTGTAG---GGTCATTCATTTTTCTTTTTTCTTCTTCATTCAA-GAAACATGTACATAAAATG-
----GTGTTTGGTTAAATTAAAGTAGATATTATATC---------------------------CACAAAAAAAGATGTTA
AAGGAGACATTCCTGTCAATTTTATCTGGT---TGTGGC-----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------ACACAGTGCTATATTCGTCGAGAAA
AGAGTAGACTAGTGCACAGTGGCGTAGCCAGCCCGATTTGTCAGGGTGGTCCGGTAATAGAAATATTTACACAAGTTTTG
TTTTATTTTAAACGAAATGTTTTTTACTACACTATACATAAGCTATGGGGGAATTCCAGGGTGGTCCATGGACCACCCTG
GCCACCCCCTAGCTACGCCACTGCTAGTGCATGTGGATCATATCATCACATGGTGCTTGCA-------CTTTTGCTTTGT
GCATCTGAGAATCATGTGACATGGACAAGAACCGGTGGACTAATCCAAGTCCACTCACACATGGTTTTCATATCATATTC
ACACGGTTGAGTTATTGTATCCTATCCTTTTTTTTCTTGGTGCGGGGCAGCATATGTGCGTGGCTTTGCATTTTGCATAG
TGCGTCAGACGGTGCATCAGCAGATGCGACTAGCCAGTGGTTTATCACCAGACAGACCTATGAAGTGCCAACGTTGGATA
TTTTGATGTTGATATCTCTCCATCTGCATATGAGCAAGAATTCGACACGTTCCGGTTGGGCACACCACCGTCTCGGCCTG
CCTTGCAAGCAAAAAACGACATATGGTGTTTGCTTCAGGAACAAGGCAAGGAAATGATATGCATGAACCATTGAGTGTCT
AGATGAATCAAACATAGGCATGATTGAGAAACACAACTAAATTATGAAGTGCTAGTATAAACTCTGGTGATTTCACATGT
TTTCTTTTCTGAATAATTTGGTGTGCGGATCATTCTGGTAGCCGGAAGCGCAATAAATGAACCGAAAACCCCAAATGTGA
AGAATCTGGAAAATTTGTGAAGCCATCTTTTTGGAACCGTGGTTGTCGCCTCCGCTTGGTCACCGCTCACCACCGCCTTT
CAGTTACAAGTTGCACTTTGGTCGCTCACACGTTGGGCGTCATCGTCGAAAGTGGAACACTTTTTTATTTTATTTAGCTT
TATCTTGTTAAACCCCTCAAATTTCTACTGTTGCAAACAAGGTACTAATGATCAAGCAATGATCATTGATCAACCCTTGC
TTAAAAAACACAAACAATTTTTTTAGGAGTTAAAAATACAAACAGTTTGGAATACTCTCATGGCGGCCTGGTGGGCCAGA
TGCACGATTAGAATATGCAACCCTATTTCAGGAACAAGTAACTAGTGGGAAAAAATTCTTCAGTAACAAAATCACCCCAC
CAACATTAGGTAAAGGACGCCCCATGGTAATCTTGAAAAGGAAGGCGAGCATTTTGCTTCCCCTTCACTCATGAAGGTGA
TTTACACTCTAATTCGCCTTCGAGCGATCATGCTCTGATCGTTGGCACATGAAACAACCATGAGACTTCCTATACAATGC
CTTAAGCACGAGTTTTCTAAGGCACTGCTCATGCGCAAGGTCATTTGGGTCGGCCCATTAAGCACGACCAATCGCTTCCC
TCAACAACAACAAAACTCGCTCGCTCGCTCGCAGCTACTATCTCAGTCCTCACTTGAGCATTGGACCATTGACACAAATT
TAGGGTGTGCATCATGTACCAGTTGGCCGGAAGCATCCTATCTTTTCTTCTTGGTGCAGGGCAGCATATATGCGTTGCTT
TGCATAGTGCGCCAGACGGTGCATCAGCAGACGCGACTGGTCAGTGGTTTATCACCAAACAGACCTATGAAGTGCCAGCG
TTGGATATTTTGATGTTGGTATCTCTCCATTTGCATATGAGCAAGAATTTGACACGTTTGGGTT---------GGG-ACA
CCACCGTCTCGG----CCTGCCTTGCAAGCAAAAAACGACATATGGTGTTTACTTCAGGAACAAGGCAAGGAAATAATAT
GCATGCACCATTGAGTGTCTAGATGAACAAACA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------S----S-------S------------SSS-------------S----------S---S
-----------------S---S-------------S------------S---S---------------------------
---S--S-----------S-S---------------------------S-SSSSSS---------S--------------
-S-----------------------S-S---------SS---------------S------SS-SSSSSSSSSSS-----
--S------------------S------------------------S---S--S---S--S-S--SS-------------
------S--------------S-------------S-----------------------------S------S-------
---S-------------------------S-S------------------------------------------------
S--------S--------S-------------------------------------------------S-----------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
-------SS-------------------------------------------------------------S--------S
--------------------------------------------------------------------------------
------------S-----------------------------------------------------------------S-
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------------S-------------S-----------------------------------------------------
----------------------------S---------------------------------------------------
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-----------------------------------------SSS-S---SSSSSS-----------------S-------
--------------------------------------------------------------------------------
-------------S-------SSSS----------------------------------S-----------------SSS
SSSS---S--SS-S--S------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
---S--------S----------------------S--------------------------------------------
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----------------------------------------------------------------S--S------S---S-
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----S-S---------------S--S----------------------S-------------------------------
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-------------------------------------------------------------S------------------
------------------------------------------------------S-------S----------------S
----------------------------------------------S---------------------------------
-----------------------------------------------------------S--------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_472
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------AACCTTGGGTCCGGCTTATG--------
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---------------------
>reverse_2269
--------------------------------------------------------------------------------
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----------------------------CCAGCCGCAGGAATTACCA---------------------------------
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---------------------
>forward_826
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------TGGACCTAGCAATTCCGCAG------------------------------------------------------
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---------------------
>reverse_5303
--------------------------------------------------------------------------------
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----------------------CGAGAAGAACCGGTGGACTA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------
