>input_sequence_58009
--------------------------------------------------------------------------------
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-----------------------ATGGCGCCACCAAGCCTAGCCCCCGCCGCGGCGCTCTTCCTCGCCGCGCTCCTCCTC
CTGTCCGCCTCCCCGGCGTCCGCGGCGAGGCCGCGCTCCTCCTCCAAGGCGGCAGCCGGGCCGCACGACATCCCGGCAGT
GTTCGCGTTCGGCGACTCCACGCTGGACCCGGGCAACAACAACCGGCTGCCGACGGTGGTGCGCGCCGACCACGCGCCCT
ACGGCCGCGCCTTCCCGGCCGGCGTGCCCCCCTCGGGCCGCTTCTCTGACGGCAAGCTCATCACCGACTACATCGTCGCC
GCGCTCGGCATCAAGGACCTGCTCCCGGCGTACCACGCCAGCGGGGTCACCCACGCCAACGCCACCACCGGGGCCAGCTT
CGCGTCCGGCGGGTCCGGCCTCGACGACATGACCGCGCATGCCGTCATGGTCTCCACGTTCTCGTCGCAGATCGCCGACT
TCCAGCAGCTCCTCTCCCGCATCGGCGAGCCGCAGGCCGCCGACATCGCCGCCAAGTCCCTCTTCATCCTCTCCGCCGGC
ACCAACGACGTGACCATGAACTACTACGACTTGCCGTTCCGCGCCCTCGAGTACCCCACCATCGACGCCTACCATGACTA
CCTCATCAGCCGCTACCAGTCCTACATCCAGGTCAGATCT-------A-------------------------TCATCTT
CTTCTCGTTCACTCAGTTCGTGTATATAGC-ACTGATCGATTAACAAGCAACTATACATGACATGCAGAGCCTGTACAAG
CTGGGGGCGCGGAGGTTCATCGTGGCCGGCATGCCGCCGGTGGGGTGCCTGCCGATGCAGAAGAGCCTGAGGGGGCAGCA
GCCGCCGCTGGGGCACGGGTGCGTGGACCTGCAGAACGAGGAGGTGCAGCGGTACAACGCCAAGCTGCAGCAGGCGCTGG
CGGCGCTGGAGGCGGCGAGCGCCGGCGCCAGCATCTCGTACGTGGACACGTACGCGCCGCTCATGGACATGGTGGCGCAG
CCCAAGAAGTACGGGTTCACGCAGACGGGGCAGGGGTGCTGCGGCACGGGGCTGCTGGAGATGGGGGCCATGTGCACCGG
CCTGCTGCCGCAGTGCAAGTCGCCGGCGCAGTACATGTTCTTCGACGCGGTGCACCCCACGCAGGCCGCCTACAAGGCCG
TCGCCGACCAGATCATCAAGACCCACATCGCGCAGTTCAAGAATTAG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr1D_1_TraesCS1D01G297500
CTACCTAGGGAGCTCAGCA-CTGTTGCTGCCAAGTGTCCCAAACGTCGCAGCATTGGAAGCTATCGCCTGTCGAGGGGCC
CTATCATTGGCGGAAGATTTGTCACTTCAAAACTTTGTAGCTGCATCAGATTCAAAACAGGTGATAAAGGGGAACAGTAC
---------------CTT----TGCATCATCAAGGAGATGAAGCACTGAGCAACTTTCTTCAATTGTAAATTTGATTATG
AATGTAGAGGGGCAAACAAAGAAGCAAATAGCTTAGCTAAGTTTACGAACTCTTTGGACCAAAGACGCATCCTGCACATT
GATCCGGTAGCGAGGCCCGCCCTGGTCGAACCACCAAACCACACATCTTTTTT-TGGTGGGAGGTGCTCAGCTTGGATTA
TTGGGTGCAAAGGAGGTTGCAAGGGAAGGCGGAAATGGCCTCGTGCAAAATAGTCCTACGATCCGAGCAACTGAGCCTTC
CCACATTCCGACTAATAATGCTGAAAAACGTGTTGCATTTT-GTTACAGAGGTGGTATAGTTATGTCTTGGTGGATTCCT
CAAGGAATGAACGGTATGCCGTGTAATAGGACAGGTTA-----------------GAGGAAGTTAAACTTAACAGGACTC
TCTTCGACACGGTAAAGCCAATCTTTTTTTTTTGATCGTACGATCTTCCCCGTCCTTGCGCGACCATATCTTCTTAGTTC
TCTT---------TTTTTTTTTAACTGATATCTTCTTAGTTCTTACTTGGACGTAGGGCAATTGGAGTCTGGAGATCAAT
CGTCACGTAGGGCAATTGGAGTCTGGAGATGAATCGCCCAGAACCGTTACAGATAGAAAATTTAGAACAGAAACTTGAAG
CGCAGAGTCGTAAAATCGTTGCAGCCGTATCTATCCGCCTCACAGTCGTCGTTTAAACTTCAAACCTCGTACGTGCACAC
GCCAATCTCTTCCCGCGCCCCTCCCCTCCGCCA--TATATATCCCTCCCCGACCCCCTCACGCATCAATCACAATCG---
----------CGATCGATCTACGATGGCGCCACCAAGCCTAGCCCCCGCCGCGGCGCTCTTCCTCGCCGCGCTCCTCCTC
CTGTCCGCCTCCCCGGCGTCCGCGGCGAGGCCGCGCTCCTCCTCCAAGGCGGCAGCCGGGCCGCACGACATCCCGGCAGT
GTTCGCGTTCGGCGACTCCACGCTGGACCCGGGCAACAACAACCGGCTGCCGACGGTGGTGCGCGCCGACCACGCGCCCT
ACGGCCGCGCCTTCCCGGCCGGCGTGCCCCCCTCGGGCCGCTTCTCTGACGGCAAGCTCATCACCGACTACATCGTCGCC
GCGCTCGGCATCAAGGACCTGCTCCCGGCGTACCACGCCAGCGGGGTCACCCACGCCAACGCCACCACCGGGGCCAGCTT
CGCGTCCGGCGGGTCCGGCCTCGACGACATGACCGCGCATGCCGTCATGGTCTCCACGTTCTCGTCGCAGATCGCCGACT
TCCAGCAGCTCCTCTCCCGCATCGGCGAGCCGCAGGCCGCCGACATCGCCGCCAAGTCCCTCTTCATCCTCTCCGCCGGC
ACCAACGACGTGACCATGAACTACTACGACTTGCCGTTCCGCGCCCTCGAGTACCCCACCATCGACGCCTACCATGACTA
CCTCATCAGCCGCTACCAGTCCTACATCCAGGTCAGATCT-------A-------------------------TCATCTT
CTTCTCGTTCACTCAGTTCGTGTATATAGC-ACTGATCGATTAACAAGCAACTATACATGACATGCAGAGCCTGTACAAG
CTGGGGGCGCGGAGGTTCATCGTGGCCGGCATGCCGCCGGTGGGGTGCCTGCCGATGCAGAAGAGCCTGAGGGGGCAGCA
GCCGCCGCTGGGGCACGGGTGCGTGGACCTGCAGAACGAGGAGGTGCAGCGGTACAACGCCAAGCTGCAGCAGGCGCTGG
CGGCGCTGGAGGCGGCGAGCGCCGGCGCCAGCATCTCGTACGTGGACACGTACGCGCCGCTCATGGACATGGTGGCGCAG
CCCAAGAAGTACGGGTTCACGCAGACGGGGCAGGGGTGCTGCGGCACGGGGCTGCTGGAGATGGGGGCCATGTGCACCGG
CCTGCTGCCGCAGTGCAAGTCGCCGGCGCAGTACATGTTCTTCGACGCGGTGCACCCCACGCAGGCCGCCTACAAGGCCG
TCGCCGACCAGATCATCAAGACCCACATCGCGCAGTTCAAGAATTAGTTAGATATAAGTTCTAGTTCTGCAGCTTCGGCT
GTGCGCGTAGTAGATGATAGAGAAATTAAG--------------------AGGATTGCTACCGGAGTAGATTAGATA-TA
CTACAGTTCAGCCGAATGTCCTTCAGACATACACAAGTTA--ATTCG-----------------CTGTGATTATTCAGAT
AGAATTTAGACTTCAGATCAGCT-CTAGTTATAATAGCAGATTGGATTGG-TTCAGATTGTTTTTTTTTCT-GTGAAT--
-------TTGATAGTATCACTAAATTGGTTTGGCACTTTACTAAACATAAAAATAAGCATAGTACTGAAACGCTCATCAT
CGATTCG---------------------------------CATGTGGATGCATCCACCTTTTGCCTTAGTT-T--GAGTC
TGAAATAACTCCCAGATTTTCACCAAAACGATATAGTTGGTCAGCAAACTCC------AAAAAACTCTCCAGATTTTCCG
CAAATTCAGAGTCCAGCTATCAGCTGCTACTTCATTGTTAGCCCTAAGAAACCTGAAGAT-AAAGATAAAAGCCATTCGG
CATGTGTGAATATAAGGAGAATGC----TAGGTAAAAAAGAGATGGTAAAATCAAAGTATGACATGCATGTCTTGACAGC
AAGATTGCGGCAAGAAAAATCAGGCTCCTAGATGAGCATGAACTGGTGATCAGTTTGTACGGTGTTGATATTTCAGCACA
AGCTTTGAGAT-----TTGATCAATTGGTGTCGGTGATGATATTTCAGGAAAAGAAGAAAATGCTCAATTCTTCTGCAGC
TTCTGTTGTGCGCCTAGATAGAGAAACTAAGCTCGTTGATAGATACAGGATTATTAACAGAGTAGATTAGGTATACAGTT
CAGATGAAAATGTGCTTCATACATATCAACACAAGTCAATACGCTGTAATCATTCAGATATAGTTCAGATCAGCTTCTAC
CCACAAATAGCAGATTGGATTGGCTCAGATTATTTTTT------------------------------------------
---TCGTAACTTATTGATAGTATAACAGCATTCTACA-------------------------------------------
--------------------------------------------------------------------------------
-----------------------AATGGAGAAGAAAAATAAATCATCGATTGGATCGACTGC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr1A_1
CTACCTAGGGAGCTCAGCC-TTGGTGGTACCGGGTGTCACAAACGTCGCAACATTGGGAGCTATCGCCCGTCGAGAGGCC
TTACCATTGGCGAAAGATTTGTCACTTCAAAACTTTGTAGTTGCATCAGATTCAAAACAGGTGGTAAAGGATATTGAAAG
AGACACATATAGTACCTACAGATGCATCATCAAGGAGATCAAGCACCAGGCGGCTTTCTCTAATTGTAAATTTAATTATG
AATGTAGAGGGGCAAACAAAGACGCATATAACTTAGCTAAGTTTATGAACTCTTTGGACTAGAGACGCATCCTCCGCATT
GATCCGGCAGCAAGACCCGCCCTGGTCGAACCACCAAACCGCACATCTG-TTT-TGGTGGGAGGTGCTCAGCTTGGATTC
TTGGATGCAAAGGAGGTTGCAAGGGAAGGCGAAAATGGCCTCGTGCACAGTAGTCCTACGATCCGAGCAATTGAGCCCTC
CCACATTTCGACTAATAATGCTGAAAAATATTTTACATTTTTGTTACAGAGGTGGTATAGTTATGTGTTGGTGGTTTCCT
CAAGGATGGT--------------------------------------------------AGTTAAACTTAACAGGACTT
TCTTCGGCACGATAAAGCCA----------------------ATCTTCCCCGTCCTTGCGCAACCATATCTTCTTAGTTC
T--T---------TCTTTTTTGAACTGATACATTCTTAGTTCTTACTTGGACGTAGGGTAATTGGAGTCTGGAGATCAAT
CGTG----------------------------------CAGAACCGTTACAGATAAAAATTTTATAACAGAAACTTGAAG
CGCAGGGCCGTAAAGTCGTTGCAGCCGTATCTATCCACCTCACCGTCGTCGTTTAAACTTCAAACCT-----------AC
GCCAATCTCTTCCCGCGCCCCTCCCCTCCGCTA--TATATACACCCGA------CCCTCACGCCTCAACCACAATCCCAC
CGCGATCGATCGATCGATCCACGATGGCGCCACCAAGCCCAGCCCCCGCCGCGGCGCTCTTCCTCGCCGCGCTCCTCGTC
CTCTCCGCCTCCCCGGCGTCCGCGGCGAGGCCGCGCTCCTCCTCCAAGGTGGCAGCCGGGCCGCACGACATCCCGGCCGT
GTTCGCATTCGGCGACTCCACGCTGGACCCGGGCAACAACAACCGGCTGTTCACGGTGGTGCGCGCCGACCACGCGCCCT
ACGGCCGCGCCTTCCCGGCCGGCGTGCCCCCCTCGGGCCGCTTCTCGGACGGCAAGCTCATCACCGACTACATCGTCGCC
GCGCTCGGCATCAAGGACCTGCTCCCGGCGTACCACGCCAGCGGGGTCACCCACGCCGACGCCACCACCGGGGCCAGCTT
CGCGTCCGGCGGGTCCGGCCTCGACGACATCACCGCGCACGCCGTCATGGTCTCCACCTTCTCGTCCCAGATCGCCGACT
TCCAGCAGCTCCTCTCCCGCATCGGCGAGCCCCAGGCCGCCGACATCGCCGCCAAGTCCCTCTTCATCCTCTCCGCCGGC
ACCAACGACGTGACAATGAACTACTACGACCTGCCGTTCCGCGCCCTCCAGTACCCCACCATCGACGCCTACCATGACTA
CCTCATCAGCTGCTACCAGTCCTACATCCAGGTCAGATCTTCAGATCA-------------------------TCTTCTT
CTTCTCGTCCACTCAGTTAATCTACATACATACTGATCGATTGACAAGCAAGTACACATGACATGCAGAGCCTGTACAAG
CTGGGGGCGAGGAGGTTCATCGTGGCGGGGATGCCGCCGGTGGGGTGCCTGCCGATGCAGAAGAGCCTGAGGGGGCAGCA
GCCGCCGCTGGGGCACGGGTGCGTGGACCTGCAGAACGAGGAGGTGCAGCGGTACAACGCCAAGCTGCAGCAGGCGCTGG
CGGCGCTGGAGGCGGCGAGCGCCGGCGCCAGCATCTCGTACGTGGACACGTACGCGCCGCTCATGGACATGGTGGCGCAG
CCCAACAAGTACGGGTTCACGCAGACGGGGCAGGGGTGCTGCGGCACGGGGCTGCTGGAGATGGGGGCCATGTGCACCGG
CCTGCTGCCGCAGTGCAAGTCGCCGGCGCAGTACATGTTCTTCGACGCCGTGCACCCCACGCAGGCCGCCTACAAGGCCG
TTGCCGACCAGATCATCAAGACCCACATCGCGCAGTTCAAAAACTAGTGAGATGTGAGTTCTAGTTCTGCAGCTTCGGCT
GCGCAC---GTAGATGATAGAGGAATTAAGCTCGTAGATAGAGTAGATACAGGATTGCTACCAGAGTAGATTAGATATTA
CTACAGTTCAGTCGAATGTCCTTCAGACATACAGATAGTATCACTAAATTGGTTTGGCACTTTACTGTGATTATTCAGAT
AGAGTTTAGACTTCAGATCAGCTTCTAGTCATAATAGCAGATTGGATTGG-TTCAGATTGTTTTTTTTTCCCGTGAAT--
-------TTGATAGTATCACTAAATTGGTTTGGCACTTTACTAAGCATAAAAATAAGCATAATACTGAAACGCTCATCAT
CGATTCG---------------------------------CATGTGGATGCATCCACCTTTTGCCTTAGTTAT--GAGTC
TGAATTAACTCCCATATTTTCATCAAAACGAGATAGTTGGTCAGCAAACTCCAAAAAAAAAA-CCTCTCTAGATTTTCTG
CAAATTCAGAGTCCCGTCATCAGCTGCTACTTCATTGTTAGCCCTAAGAAACCTGAAGTT-AAAGATAAAAGCCATTCGG
CAGGTGTGAATATAAAGAGAATGCGCCATTGGGAAAAAAGAGATAGAAAAATCAAAGTATGATATGCATAC--TGACAGC
GAGATTGCGGCAAGAAAAATCAGGCTCCTAGATGAGCATGGACTGGTGATCAGTTTGTACGGTGTTGATATTTCAGCACA
AGCTTGAGATTCAGGCTTGATCAATTGGTGTTGATGATGATATTTCAGGAAAAGAAGAAAATGCTCAATTCTTGATATGT
ATGC----------------------------------------------------------------------------
-----------------------------------TCAATTCACTGTAATCATCCAGATATAGTTCAGATCAGCTTCTAC
TCACAAATAGCAGACTGGATTGGATCGATTGCGACTGTCTTAACACATCCTCTCATCAGCCCTCTCCAAATGAAAATCAA
AACTTGAAACTAAATAATTGGTTATCTCCATTCTAAACAATATAAGCCAGGAGGAGTGCAGCCTTCAAAACATGTTTTGC
AGGTAAAATGAAGTGAATGGTAGATCAGGAAAAAAGGGGCAACTAGCCATAATATACGAAACTAGCAGTTTAATATATAT
TTTTGTTCATACAAAACCAAAATAATGGAAAGGAAAACCAAATGATCAGATTTTAAGTGTTCGAATTTTAGCTAAGCAAC
TAAAGAATATAAATAAGCACAGTACTGAAACGCTCATCATCAATTCGTCACATGCCTCATACAAATAAGTTCCTCACAAG
TGAGTTAAACATGTGGATGCATCCACCTTTTGCCTTAGTTATGACTCTGAACTAACTCCTAGATTTTCCACAAAACGAGA
TAAGTCACTTCCACAAACCCAAACATCTCCATATTTTCCGCAAATTCAGAGTCCCGCCATCAGCTGCTACTTCATTGTTA
GTCTTAAGAAACCTGAAGATAAAGGACATGTAAAGATAATGCACCATAGCGAAAAAAGAGATGGAAAAATCAAAGTATGC
CTCGATGACACGCATGTCTTGGCAGCGAGATTGCGGGAAAAAAATAATTAGGCTCCGAGATGAGCATGCATTGGTGATCA
GTTGGTGTTGGTATTTCACCATAAGCTTCAGATTCAGGCTTGATCTATTGGTGATGATATTTCAGGAAAATAATAAGAAA
ATGGTCAATT
>chr1B_1
CTACCTAGGGAGCTCAGCAACTGTTGGTGCCAGGTGTCACAAACGTCGCCGCATTGGAAGCTATCGCCTGTCGAGGGGCC
CTATCATTGGCGGAAGATTTGTCACTTCAAAACTTTGTAGCTGCATCGGATTCAAAACAGGTGATAAAGGATATTGAAGG
AGACATGGATAGGATCTT----TGCATCATCAAGGAGATCAAGCACCGGGCAACTTTCTTCAACTGTAAATTTGATTATG
AATGTAAAGGGGCAAACAAAGAAGCAGGTAGCTTAGCTAAGTTAC------CTTTGGACCAGAGACACATCCTCCCCATT
GATCCGGCAACGAGAT-CGCCCTGGTTGAACCACTAAACCGCACGTCTT-TTTTTGGTGGGAGGTGTTCAGCTTGAATTG
TTGGGTGCAAAGGATGTTACAAGGGAAGGCGGAAATGGCCTCGTGCACAGTAGTCCTACGATCCGAGCAATTGAGCACTC
CCACATTCCGACTAATAATGTTGAAAAACGTTTTACATTTC-GTTACAGAGGTAGTATAGTTGTATCTTAGTGGTTCCCT
CAACGAATGAACGGTATGCCGTGTAATAGTACCTACGTCTTGTTGGACAGATTAGGAGGAAGTTAAACTTAACAGGACTC
TCTTGGACACGATAAAGCCA----------------------ATCTTCCCCGTCCTTGCGCGACCATATCTTCTTGGTTC
T--TTTTTTTCTTTTTTTTTTGAACTGATATCTTCTTAGTTCTTACTTGGACGTAGGGCAATTGGAGTCTGGAGATCAAT
CGTC----------------------------------CAGAATCGTTACAGATAGAAAATTTAGAACAGAAACTTGAAG
CGCAGAGTCGTAAAGTCGTTGCAGCCGTATCTATCCGCCTCACCGTCGTCGTTTAAACTTCAAACCTCGTACGTGCACAC
GCCAATCTCTTCCCGCGCCCCTCCCCTCCCTCCGCTATATATACCTGCCCGG--CCCTCACGCCTCAACCACAATCCCAT
CGCGATCGATCGATCGACCTACGATGGCGCCACGAAGCCCAGCCCCCGCCGCGGCGCTCTTCCTCGCCGCCCTCCTCGTC
CTCGCCGCCTCCACGGCGTCCGCGGCGAGGCCGCGTTCCTCCTCCAAGGCGGCAGCCGGGCCGCACGACATCCCGGCCGT
GTTCGCGTTCGGCGACTCCACGCTGGACCCGGGCAACAACAACCGGCTGCCGACGCTGGTGCGCGCCGACCACGCGCCCT
ACGGCCGCGCCTTCCCGGCCGGCGTGCCCCCCTCGGGCCGCTTCTCCGACGGCAAGCTCATCACCGACTACATCGTCGCC
GCGCTCGGCATCAAGGACCTGCTCCCGGCGTACCACGCCAGCGGGGTCACCCACGCCAACGCCACCACCGGGGTCAGCTT
CGCGTCCGGCGGGTCCGGCCTCGACGACATCACCGCGCACACCGTCGTGGTCTCCACCTTCTCGTCCCAGATCGCCGACT
TCCAGCAGCTCCTCTCCCGCATCGGCGAGCCCCAGGCCGCCGACATCGCCGCCAAGTCCCTCTTCATCCTCTCCGCCGGC
ACCAACGACGTGACCATGAACTACTACGACCTGCCGTTCCGCGCCCTCGAGTACCCCACCATCGACGCCTACCATGACTA
CCTCATCAGCCTCTACCAGTCCTACATCCAGGTCAGATCTTCAGATCGATACTTAATCTGTTAATCATCATCTTCTTCTT
CCTCTCGTCCACTCAGTTCGTGTCTATAGT-ATTGAGAGATTGACAAGCAACTATACATGACATGCAGAGCCTGTACAAG
CTGGGGGCGTGGAGGTTCATCGTGGCCGGCATGCCGCCGGTGGGGTGCCTGCCGATGCAGAAGAGCCTGAGGGGGCAGCA
GCCGCCGCTGGGGCACGGGTGCGTGGACCTGCAGAACGAGGAGGCGCAGCGGTACAACGCCAAGCTGCAGCAGGCGCTGG
CGGCGCTGGAGGCGGCGACCGCCGGCGCCAGCCTCTCGTACGTGGACACGTACGCGCCGCTCATGGACATGGTGGCGCAG
CCCAAGAAGTACGGGTTCACGCAGACGGGGCAGGGGTGCTGCGGCACGGGGCTGCTGGAGATGGGGGCCATGTGCACCGG
CCTGCTGCCGCAGTGCAAGTCGCCGGCGGAGTACATGTTCTTCGACGCCGTGCACCCCACGCAGGCCGCCTACAAGGCCG
TCGCCGACCAGATCGTCAAGACCCACATCTCGCAGTTCAAAAATTAGTTAGATGTGAGTTCTACTTCTGCAGCTTCGGCT
GTGCGCGTA-TAGATTATAGAGAAATTAGGCTCTTTGATGGAATAGATACAGGATTGCTACCGGAGTAGATTAGATA-TA
CTACAGTTCAGTCGAATGTCCTTCAGACATACACACGTTATAATTCG-----------------CTGTGATTATGCAGAT
AGAGTTTAGACTTCAAATCAGCTTCTAGTCACAATAGCAGATTGGATTTCTTTCAGATTGCTTCTTCCG----TAAATTC
TTGCTACTTGATAGTATCACTAAATTGGTT------------AAACATATAAATAAGCATAATACTGAAACGCTCATCAT
CGATTCGTCACATGTCTCATATCCTCACAAGGGAGTTAAACATGTGGATGCATCCACCTTTTGCCTTAGTTATATGAGTC
TGAAATAACTCCCGGAATTTCACCAAAACGATATAGTTGGTCGGCAAACTCAAAGAAAAAAAAACTATCCAGATTTTTCG
CAAATTGAGACTCCCGCCATCGGCTGCTACTTCATTGTTAGCCTTTAGAAACCTGAAGAT-AA-GATAAAAGCCATTAGG
CATGTGTGAATATAAAGAGAATGCGCGATAGGGAAAAAACAGAGAGAAAAATTAAAGGATGACATGCATGTCTTGACAGC
GGGACTGAGGCAAGAAAAAACAGGCTCCTAGATGAGCATGAATTGGTGATCAGTTGGTACGGTGTTGATATTTCAGCACA
AGCTTGAGATTCAGGCTTGATAAAA-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------TGGTGATGATATTTCAGGAAAAGAAGAAGAGA
ATGCTCAATT
>chr1A_2011
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------GGGGCAGGGGTGCTGCGGCACGGGGCTGCTGGAGATGGGGGCCATGTGCACCGG
CCTGCTGCCGCAGTGCAAGTCGCCGGCGCAGTACATGTTGTTCGACGCCGTGCACCCCACGCAGGCCGCCTACAAGGCCG
TTGCCGGCCAGATCATCAAGACCCACATCGCGCAGTTCAAAAACTAGTGAGATGTGAGTTCTAGTTCTGCAGCTTCGGCT
GCGCAC---GTAGATGATAGAGGAATTAAGCTCGTAGATAGAGTAGATACAGGATTGCTACCAGAGTAGATTAGATATTA
CTACAGTTCAGTCGAATGTCCTTCAGACATACAGATAGTATCACTAAATTGGTTTGGCACTTTACTGTGATTATTCAGAT
AGAGTTTAGACTTCAGATCAGCTTCTAGTCATAATAGCAGATTGGATTGG-TTCAGATTTTTTTTCCCA----TGAAT--
-------TTGATAGTATCACTAAATTGGTTTGGCACTTTACTAAGCATAAAAATAAGCATAATACTGAAACGCTCATCAT
CGATTCG---------------------------------CATGTGGATGCATCCACCTTTTGCCTTAGTTAT--GAGTC
TGAATTAACTCCCATATTTTCATCAAAACGAGATAGTTGGTCAGCAAACTCCAA-AAAAAAAACCTCTCTAGATTTTCCG
CAAATTCAGAGTCCCGTCATCAGCTGCTACTTCATTGTTAGCCCTAAGAAACCTGAAGTTAAA-GATAAAAGCCATTCGG
CAGGTGTGAATATAAAGAGAATGAGCCATTGGGAAAAAAGAGATAGAAAAATCAAAGTATGATATGCATAC--TGACAGC
GAGATTGCGGCAAGAAAAATCAGGCTCCTAGATGAGCATGGACTGGTGATCAGTTTGTACGGTGTTGATATTTCAGCACA
AGCTTGAGATTCAGGCTTGATCAATTGGTGTTGGTGATGATATTTCAGGAAAAGAAGAAAATGCTCAATTCTTGATATGT
ATGC----------------------------------------------------------------------------
-----------------------------------TCAATTCACTGTAATCATCCAGATATAGTTCAGATCAGCTTCTAC
TCACAAATAGCAGACTGGATTGGATCGATTGCGATTGTCTTAACACATCCTCTCATCAGCCCTCTCCAAATGAAAATCAA
AACTTGAAACTAAATAATTGGTTATCTCCATTCTAAACAATATAAGCCAGGAGGAGTGCAGCCTTCAAAACATGTTTTGC
AGGTAAAATGAAGTGAATGGTAGATCAGGAAAAAAGGGGCAACTAGCCATAATATACAAAACTAGCAGTTTAATATATAT
TTTTGTTCATACAAAACCAAAATAATGGAAAGGAAAACCAAATGATCAGATTTTAAGTGTTCGAATTTTAGCTAAGCAAC
TAAAGAATATAAATAAGCACAGTACTGAAACGCTCATCATCAATTCGTCACATGCCTCATACAAATAAGTTCCTCACAAG
TGAGTTAAACATGTGGATGCATCCACCTTTTGCCTTAGTTATGACTCTGAACTAACTCCTAGATTTTCCCCAAAACGAGA
TAAGTCACTTCCACAAACCCAAACATCTCCATATTTTCCGCAAATTCAGAGTCCCGCCATCAGCTGCTACCTCATTGTTA
GTCTTAAGAAACCTGAAGATAAAGGACATGTAAAGATAATGCACCATAGCGAAAAAAGAGATGGAAAAATCAAAGTATGC
CTCGATGACACGCATGTCTTGGCAGCGAGATTGCGGG-AAAAAATAATTAGGCTCCGAGATGAGCATGCATTGGTGATCA
GTTGGTGTTGGTATTTCACCACAAGCTTCAGATTCAGGCTTGATCTATTGGTGATGATATTTCAGGAAAATAATAAGAAA
ATGGTCAATT
>SNPs
--------------------------S-----S-----S-----------------------------------------
----------------------------------------------------------------------SS-SSSSS-S
---------------------------------------S------S-S-------------------------------
--------------------------S------------------S---------------S-----------S-S----
-------S------S-------------------------S--------S-----------------------------S
-----------------------------------------------S-S--------------------S------S--
-------------------------------S--S---------------------------------------S-----
-----------------------------S--SSSSSS------------------------------------------
-----------S--------SSSSSSSSSSSSSSSSSSSSSS--------------------------------------
-SS------------------S----------------------------------------------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
--------------S----------------------------S------------------------------------
------------------------------------------S---S----SSS---------S----S-------S---
---------------------------------------S-------------------------------------S--
--S--------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------------------------S--------S-----------------S--------S-------------
-------------------------------S------------------------------------------------
------------------------------S-------------------------------------------------
---------------------------------------------------------------------------S----
--------S--------------------S------------S-------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------S------------S-S------------------------
--------------------------------------------------------------------------------
-----------S-----------------------S--------------------------------------------
---S-------------------------S----------------------------------------S---------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--S--------------------------------------------------------------
---------------S----------------S-----------S-S---------------------------------
S-------------------------------------------------------------------------------
-----SSSSS---------------------S-----------------------------------------SSSSS-S
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S----------S--------------------------
S-------------S--------S--SSS-SSSS--S-------------------------------------------
----S-S----S-S-S--S-SS--S-SS-------S--------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S-S-----SS----S---SSS-SSSSS-SS-S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_652
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CAGGACTC
TCTTCGACACGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_1507
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCAGATCGCCGACT
TCCAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_819
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CGTCACGTAGGGCAATTGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_1850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGGAGGTTCATCGTGGCC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_829
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GGGCAATTGGAGTCTGGAGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_2296
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAGTTCTAGTTCTGCAGCTTCG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------
