>input_sequence_57947
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-------------------------------------------------------------------------------A
TGGGGCCGGCACGCTGCGCCGATGGCCGCCGATGGCTCCTCCTCCTGATCGTGCTCGCCGTGGCAGACTTCGGGGCGGCG
CAGCAGAACCAGAACCCGCCGCCGCCGGGCGGGCAGTACTACACC---AACTTCAGCCCGTCCATGGCGA----------
--TCGTCATCGTCGTCCTCATCGCCGCCTTCTTCTT------CCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCTACG
G--------CGACAGCCCCTACTCGGCCACCACGCTCCCGCTCGGCGCCGGCGCGGCGGCGCGCTCGCGGCGGCAGCAGC
GCGGGCTCGACCCGGCCGT---CCTGGAGACCTTCCCCACCATGGCCTACGCCGACGTCAAGGAGCACAAGGCCGTCAAG
GGCGCGCTCGAGTGCGCCGTCTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCCAAGTGCTCCCACG-
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--------------------------------------------------------------------------TCTTCC
ACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTCACCTGCCCGGTCTGCCGCGCCAACCTCGTCCCCGACGCCGAC
GACGCCGACGCCCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGGGCGTCCATCCC-----------------------
----GCCCCGCAGCCGCAGGAATT---------GCCGGCGCCTGAGGCGGAGGCGGCGCATGCCGTCGTCATCGACGTGG
AGGAGAGCGAGGACGAGCGGATCATACGGGAGGAGACCGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGG
TCCAAGTCCAGCCGCGGGCCCG---CGCGCTTCCCGCGCTCGCACTCCACAGGCCACTCGCTCGCCACGCGAGCCAGCA-
-----CCGGCACCGGCGCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCGGAGAGCGTGCTCCGGGAGGTGGTCGCGGCCG
GCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACGGCCGGCCGCCAGGGCAGCATGCGCCGCGCCCTCCGGCTAGGC
GGCGGCGGCG--------GCGACGGGAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCATCG
TTCCTGTCGCGGACCTTCTCGGCGGCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGG
GAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGGCAACGTGTTTA
G-------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G248100
GTCTTCTTTTTATTGAGAAGTA---CCAGTAGACACATTTCTAATTTTATAGTGAAATGAATATTCAACATATATTAAAC
AAGCATGTGGCTTGTGGCACCCACAGCCATAATCACAGAACCTTGTGGCATATGATTATGCATGTAGTTTTTGTTTAAGA
ATCATGCATGCAGTAGTTAGGAAGCTTCATAAAACTAATAATTTTACAAAGATGGGCTTTGTGTTAACTAAGC-TAGCTT
AGATGATTAGGTTCCTACTAGTGCAACCAGCCCGCCAGGATTCTAATCCCAGACTTGACAACAGTGCTCGTATTTTTTCT
GGATTTATTTCAAGCTTCTTTGTCGATTTTTTC---TAGCGAGAGTAAACGTTTCCGTCGACAACGAAGAAGGCAACGTC
AATCTCAAACTGTT-GACCATATCTCGAAAGTGCTATAGCAGCAGGGTGAGTGTGTGCGCGCGTGTCTGTGGGCATCTAT
GATTATACTGCATTATTATTTTTTAAACATGGGC-------TTTGCTTTAGGAAACCGGGTGGGGTCACTCTGCCCCCAT
GCACTTCAAAAGGTTGTTGCACACTTCATTCTGTCATTTGACC-AAAGCATATGACCCCCGCATGAAAGTATGAAATTGG
CACCATTCAAGATGTAAAAGACAAAGGAGCATTCAAAACAAAACTCGGTAAAATAGGCAGTAGAGACACTCAAAACCAGC
ACTACTCCATTCGCTACGTACGTGCAGCAATGAATTCGCGGTGGACCTAGCAATTCCCCACCCTTCCCGCTCCACA----
---CACACCTACAACAACATC---------TCCTCCACACACACAAAAAAAAACGAGTACAGCAACAAGCCGGCCGTCAT
CCACCTCGACCCGCCTTCT-TCTCACGTATATAAACGCGCTGCACTCCGCACCGTT-GCCGG-CCTCCCAGTTCACAACT
CCGATCGTCCCATAAAGCG-TCCA--GCT-TCCCTCCGCTAGATCATCAGCGCCACTCAGCAGAGGCACGAGCAGATCGA
TGGGGCCGGCACGCTGCGCCGATGGCCGCCGATGGCTCCTCCTCCTGATCGTGCTCGCCGTGGCAGACTTCGGGGCGGCG
CAGCAGAACCAGAACCCGCCGCCGCCGGGCGGGCAGTACTACACC---AACTTCAGCCCGTCCATGGCGA----------
--TCGTCATCGTCGTCCTCATCGCCGCCTTCTTCTT------CCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCTACG
G--------CGACAGCCCCTACTCGGCCACCACGCTCCCGCTCGGCGCCGGCGCGGCGGCGCGCTCGCGGCGGCAGCAGC
GCGGGCTCGACCCGGCCGT---CCTGGAGACCTTCCCCACCATGGCCTACGCCGACGTCAAGGAGCACAAGGCCGTCAAG
GGCGCGCTCGAGTGCGCCGTCTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCCAAGTGCTCCCACG-
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--------------------------------------------------------------------------TCTTCC
ACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTCACCTGCCCGGTCTGCCGCGCCAACCTCGTCCCCGACGCCGAC
GACGCCGACGCCCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGGGCGTCCATCCC-----------------------
----GCCCCGCAGCCGCAGGAATT---------GCCGGCGCCTGAGGCGGAGGCGGCGCATGCCGTCGTCATCGACGTGG
AGGAGAGCGAGGACGAGCGGATCATACGGGAGGAGACCGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGG
TCCAAGTCCAGCCGCGGGCCCG---CGCGCTTCCCGCGCTCGCACTCCACAGGCCACTCGCTCGCCACGCGAGCCAGCA-
-----CCGGCACCGGCGCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCGGAGAGCGTGCTCCGGGAGGTGGTCGCGGCCG
GCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACGGCCGGCCGCCAGGGCAGCATGCGCCGCGCCCTCCGGCTAGGC
GGCGGCGGCG--------GCGACGGGAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCATCG
TTCCTGTCGCGGACCTTCTCGGCGGCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGG
GAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGGCAACGTGTTTA
GTTTGACCCGG------GCCGTGGTCAAACGGTGCGTGCTTGCGTGCCGCTT-GCTGGGAATGGGAAGAAAACGGCCGTT
GCTTTCCGTTTG-----TCCCGGTGGAACTTCTCTGCTTGGTGGTGGATTTTTTGTAG---GGTCATTCATTTTTCTTTT
-----CTTCATTCAA-GAAACATGTACATAAAATG-----GTGTTTGGTTAAATTAAAGTAGATATTATATC--------
-------------------CAC-AAAAAAGAGATTAAAGGAGATATTCCTGTCAATTTTATCTGGTGGTTGTGGC-----
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-----------ATACGGTGCTATATTCGTCGAGAAAAGAGTAGA------------------------------------
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-----------------------------------------------------------CTAGTGCATGTGGATCATATC
ATCACATGGTGCTTGCA-------CTTTTGCTTTGTGCATCTGAGAATCATGTGACATGAACAAGAACCGGTTGACTAAT
CCAAG------CACACATGTTTTTCATATCATATTCACACGGTTGAGTTATTGTAGTATCCTATCTTTTCTT--------
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--------CTTGGTGCAGGGCAGCATATATGCGTTGCTTTGCATAGTGCGTCAGGCGGTGCATCAGCAGACGCGACTGAT
CAGTGGTTTATCACCAAACAAACCTATGAAGTGCCAACGTTGGATATTTTGATGTTGATA--TCTCTCCATCTGCATATG
AGCAAGAATTCAACATGTTTCGGTTG--------GGCACACCACCGTCTCGG----CCTGCCTTGCAAGCAAAAAACGAC
ATGTGGTGTTTGCTTCATGAACAAGGCAAGAAAATGATATGCATGAACCATTGAGTGTCTGAATGAACCAAACATAGGCA
TGATTGAGAAACATAACTAAATTATGAAGTGCTAGTATAAACTCTGGTGATTTCACATGTTTTCTTTCCTGAATAATTTG
GTGTGCGGATCATTCTGGTAGCCGCAAGCGCAATAAATGAACCGAAAACCCCAAATGTGGAGAATCTGGAAAATTTGTGA
AGCCATCTTTTTGGAATGGTGGTTGTCGCCTCCACTTCGTCACCACTCACCACCGCATTTCAGTTACATATTGCAGTTTG
GTCGCTCAC
>chr5D_1
GTCTTCTTTTTATTGAGAAGTAGTACCAGTAGACACATTTCTAAATTTATTGTGGAATAAATATTCAAAATATA-TAAAG
AAGCATGTGGCTTGTGGTACCCACAGCCATAACCATAGAACATTGTGGCATATGATTATGCATGTAGATTTTGTTTAAGA
ATCATGCATGTAGTAGTTAGGAAGCTTCATAAAACTAATAAGGTTACAAAGATGGGCTTTGTGCAAACTAAGCGTAGCTC
AGATGATTAGGTTCCTACTAGTGGGACCAGCCCACCAGGGTTTTAATCCCAGACTTGGCACTGGTGTTCATATTTTTTCT
GGATTTACTTTAGGGTTTTTTTTGTCAACGTTTTCTTAGTGGGAGTAAACGTTCTCGTCGACAACGAAGAACGCAGGGTC
GATCTCAGAATGTTAGACCATATCTCGAAAGTGCTATAGTAGCATGGCGAGTGTGTGTAAA--TGTTTGTGGGCATCTAC
GATTGTGTTGTATTAAAAGATAAAAACAAACAAACATGAGTTTTGCTTTAGGGAACCGGTTGGGGTCACTCTGCCCCCGT
GCACTTCAAAAAGTTGTTGCACACTTAATTCTGTCATTTGACCTAAAGCATATGACCCCCGCATGAAAGTATGAAGTTGG
CACCATTCAAGATGTAAAAGACAAATGAGTATTCAAAACAAAACTCGTAAAAATAGGC---AGAGACACTCAAAACCAGC
ACTACTCCATTCGCTACGTGCGTGCAGCAATGAATTCGCGGTGGACCTAGCAACTCCGCACCCTTCCCGCTCCACAGTCC
ACACACACCAAGAACAACACC---------TACTCAAAA---------AAAAAAAAGTACAACAACAAGCCGGCCGTCAT
CCACCTCTGCCTTCTTCTCATCTCACGTATATAAACGCGCTGCACTCGGCACCGTT-GCCGGACCTCCCAGTTCACAACT
CCATTTCTCCCATAAAGCG-TCAGCTCCCCTCCGCCCGATCGATCATTAGCGCCACTCAGCAGAG-----AGCAAATCGA
TGGGGCCGGCACGCTGCGCCAGTGGCCGCCTCTGG---CTCCTCCTCCTGGCGCTCGCCGTCGCAGACTTCACGGCGGCG
CAGCAGAACCAGAACCCGCCCCCGCCGGGCGGGCAGTACTACACG---AACTTCAGCCCGTCCATGGCCA----------
--TCGTCATCGTCGTCCTCATCGCCGCCTTCTTCTT------CCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCTACG
G--------CGACAGCCCCTACTCGGCCACCACGCTCCCGCTCGGCGCCG---CGGCCGCGCGCTCGCGGCGGCAGCAGC
GCGGGCTCGACCCGGCCGT---GCTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAAGGAGCACAAGGCCGTCAAG
GGCGCGCTCGAGTGCGCCGTCTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCCAAGTGCTCCCACG-
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--------------------------------------------------------------------------TCTTCC
ACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAACCTCGTCCCCGACGG---C
GACGCCGACGCCCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGAGCGTCCATCCC-----------------------
----GCCCCGCAGCCGCAGGAATT---------ACCGGCGCCTGAGGCGGAGGCGGCGCACGCCGTCGTCATCGACGTGG
AGGAGAGCGAGGACGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGG
TCCAAGTCCAGCCGCGGGCCGG---CGCGCTTCCCGCGCTCGCACTCCACAGGCCACTCGCTCGCCACGCGGGCCA----
--------GCACCGGCGCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCCGAGGGCGTGCTCCGGGAGGTGGTCGCGGCCG
GCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACCGCCGGCCGCCAGGGCAGCATGCGCCGTGCCCTCCGACTGGGC
GCCGGCGGCG--------GCGACGGGAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCG
TTCCTGTCGCGGACCTTCTCCGCGGCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGG
GAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGGCAGCGTGTTTA
GTTTGACCGGG------GCCGTGGTCAAACGGTGCGTGCTTGCGTGCCGCTTTGC------TGGGAAGGAAACGGCTGTT
GCTTTCCGTTTCGATTCTCCCGGTGGAATTTCTCTGCTTGGTGGTGGATTTTTTGTAG---GGTCATTCATTTTTCTTTT
-----C----TTCAA-GAAACATGTACATAAAATG-----TTGTTTGGTTAAA-----GTAGATATTATTCA--------
-------------------CACACAAAAC---ATTAAAGGAGACATTCCTATCAATTTTATCCGGT---TTGTAGCATAT
GGTGTTTTTTTTTAAATGATCATGTCTATTATAAATATGCACCATGAACCACCGAACGGCCACTACCGCCGGCAGAATGA
GCCGACGACGCTCCGATGTCACGGCTTCCATATCGAAGCCAGCCTGACCTTGTTGATAGGGAAACGTTTACTACGGTCGA
CCGGCCGAGCGTTCGGCCGGTCGCACCGCTCGTTCTCGCTGCAGGCCCACCTTATCCCTTCATGGGTGTCTTCTTCCTCA
ATTTGCCGCCTCTCCTTTTCCCCTTCTTCGCCGCTATATATCCATGCGCTAGCTACAACAGCTTCACGGCCTGCTCGGTG
CCCAACCTCGCCCTCCACCGTGGCCGACTAGCCCCTCTCACATCCGTCCCTCTCTTCAATTTTTGCATCCCCACTTGCTC
CCTGCGGCCATGGCGCCCAACCCCGCTGCCATGGAAGCCATGGTTGTGCGCCTTCGACCGTCGTCGTCCTCCTCGTCACG
GCGACGCCATGGCCGTGCTGCAAGCAGCCGCCATAGTGGAACCATGTTTGCTGCATACCCCGGAGGTACCCATGCATCAC
CGGAGACGGTTTTTGCTGCAACCGACGGTCTGAATCACTGGAACCGGCGAGTGATCATGCTGGAACCATAGGGAGAGGGC
GCTCGCTGGAGTTGTCCTGCGAGGGAAGTTGTGCCCTGTATGCAAGAAAAGCTACAACCAACATGCGGCGGAGCTAGAAC
CAACGGTGGAAAATGTTACAACCGGCTGTTAGTTTTGCTGGAACTAGCTAGGCGGGGGCTGCGCCCAACGAGTGAGAGAA
GCTGTAACCGACAGCGAAAAATGCTACAACCTGTGGCCTAGGTAGATTCAACCGGCAACATAAAAAGTTTCAAAGAACAA
CGAAGAAGCTGGTCGTCGGGGCACTTCCGCAACATAAGCTGCAACTGGCGGCCTATAAAGCTACAACCGGCGACGGGAAA
GCTTCAACCAAAAATGCGGAGAAGCTGGTGGTCAGGGCACCGAGCACAAAAAAGCTGCAACCACGGCCTAGAAAGCTTCA
ACCGGCGACTGGGAAAGCTTCAACCGGCTAATGGAGATTGCAGCGAGGCGAGCTGGGAACTTGGTGCCCATGGTGACCAT
GGCGGGTGAGGAGGAGATGCAGCTGTGATGGCGGCCGGCGGTGACAACGCCGGGTGGTTGGCGAGGACGGGGCCGAGGAC
GAGCAAGGCGGCGCGGGGTAGCTGGCGAGCGCGGCGTCGTACAAGGCGAGGCGGAACGAAGAAGACGAACGCGAGGGGAT
CCAATCGAACGGTCGCGTGTGGCCGAATCGAGCGGCTGGGGGCAGACCGGCCGAAATTTCGGCCGGCGCGCCGGCGCCTA
ACAGCCGCCTTGTCGATAACAGCTAAGAAGTCTTCGTACACGTACCCCTAGGGACTAGCGCCTCTGAGCTGCAGTCGTCG
CCGTTGAACTGATCTAAACAACCTGACACCAAATATCATCGTTGCGAATGCACGACAAAAAAACCTAATCTCGCTGCCCC
TAAGAGCCGGCACAAATCTACGTCGAAGCTCCGTCTAATTTGTCGCGATGAACGAACTCGAGGAGAATTGAAGCCTGAAA
GACTGACTCGAAGAAAAAGCGTCGCCACCCGTCCAAACGATGGCCCTGCGAGGACTAAAACCCTACATACCTATTAGCCG
AAGCCGAGGCAGCAGAAATTCCCTCCTCGCCCGGCTGCCGAAGCGGTAGGCGGAGGGGAGGCTAATCCACGGACTCGTCA
GCGAAGTTGTTATATAGTGCTATTTTCTTCGAGAAAAGAGTAGA------------------------------------
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-----------------------------------------------------------CTAGTGCTTGTCGATCATATC
ATCACATGGGGCTTGTACTTTTGCCTTTTGCTTTGTGCATCTGAGAATCATGTGACATGGACAAGAACCGGTGGACTAAT
CCAAC------CACACTT-GTTTTCATATCATATTCACACAGTTGAGTTATTGTA---TCCTATCTTTTTTT--------
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--------CTTGGTGCAGGGCAGCATATATGCGTTGCTTTGCATAGTGCGTCAGACGGTGCATCAGCAGATGCGACTGGT
CAGTGGTTTATCACCGGACAGACCTATGAAGTGCCAACGTTGGATATTTTGATGTTGATA--T--CTCCATCTGCATATG
AGCAAGAATTCGACACGTTTGGGTTTGGCAACTTGGGACACCACCGTCTCGGCTGCCCTGCCTTGCAAGCAAAAAGCGAC
ATATGGTGCTTGCTTGAAAAACAAGGCAAGGAAATAAAACACACGAGCCATTGAGTGTCTAGATAAACAAAACATAGGCG
TGATTGAAAAACATAACTAAATTATGACGT--------------------------------------------------
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>chr5B_497
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------------------------AAACATGGGC-------TTTGCTTTAGGAAACCAGGTGTGGTCACTGTGCCCCCGT
GCAAAGC----------TGTACACTTAATTGTGTTATTTGACC-AAAGCATACGACTCCCGCATGAAAGTGTGAAATTGG
CACTATTAAA-------------------------AAAAAATACTCGTAAAAAGATGC---AGAGACACTCAAAACCAGC
ACTCCATTTGC-------TAGGTGCAGCAATGAATTTGCGGTGGACCTAGCAATTCCGCAGCTTTCC--CTCTTCA----
---CACACCCACAACATTAGTAGTACAGTGTACTCAAGA---------AAAAAAAAA-------------CGGCCGTCAT
CGACCCCTTCCTCCTCCGTAAGTC-CGTATATAAACGCGCTCCACTCCGCACCGTTTGCCGGACCTCCCATTTCACAACT
CCAATTGTCCCATAAAGCGTTCAGTTCCCCTCCGCTCGATCGATCATCAGCGCCACTCAACGGT------AGTAGATCGA
TGGGGCCGGCACGCTGCGCCAGTGGCCGCCTCCTGCTCCTCTTCCTGATCATGCTCGCCGTGGCAGACTTCGGGGCGGCG
CAGCAGAACCAGAACCCGCCTCCGCCGGGCGGGCCGTACTACACGACCAACTTCAGCCCGTCCATGGCCA----------
--TCGTCATCGTCGTCCTCATCGCCGCCTTCTTCTT------CCTCGGCTTCTTCTCCGTCTACATCCGCCACTGCTACG
G--------CGACAGCCCCTACTCGGCCACCACGCTCCCCGTCGGCGCCG---CGGCCGCACGCTCGCGGCGGCAGCAGC
GCGGGCTCGACCCGGCCGT---CCTCGAGACCTTCCCCACCATGGCGTACGCCGACGTCAAGGAGCACAAGGCTGTCAAG
GGCGCGCTCGAGTGCGCCGTGTGCATCAGCGAGTTCGACGACGACGAGACGCTCCGCCTGCTGCCCAAGTGCTCCCACG-
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--------------------------------------------------------------------------TCTTCC
ACCCGGACTGCATCGACACCTGGCTCGCGTCCCACGTGACGTGCCCGGTCTGCCGCGCCAACCTCGTCCCCGATGCCGAC
---ACCGGCGCTCCGGCCGCCGGCGATCAGCCGGCCGAGCTGTCGAGCGTCCATCCC-----------------------
----GCCCCCCAGCCGCAGGAATT---------ACCAGCGTCTGAGACGGAGGCGGCGCACGCCGTCGTCATCGACGTGG
AGGAGAGCGAGGACGAGAGGATCATACGGGAGGAGACGGACGAGCTGACGCGCATCGGCAGCCTGAAGCGCGCGCTGCGG
TCCAAGTCCAGCCGCGGGCCCG---CGCGCTTCCCGCGCTCGCACTCGACAGGCCACTCGCTCGCCACGCGAGCCAGCA-
-----CGGGCGCCAGCGCCGGCGCCGAGAGGTTCACGCTGCGGCTGCCGGAGAGCGTGCTCCGGGAGGTCGTCGCGGCCG
GCAAGCTCCGGCGGACGAAGAGCCTCGTCGCGTTCACCGCCGGCCGCCAGGGCAGCATGCGCCGCGCCCTCCGACTAGGC
GCCGGCGGCG--------GCGACGGCAGCAGCCGCGGCGGGAGGAGCGTGCGGCTGGGCCAGTCCGGGCGGTGGCCGTCG
TTCCTGTCGCGGACCTTCTCCGCGGCGTGGGGGTCGAGGTCGACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGG
GAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGACAACGTGTTTA
GTTGACCGGGGCCGTCCGCCGTGGTCAGACGGTGCGTGCTTGCGTGCCGC-TTGC------TGGGAAGGAAACGGCTGTT
GCTTTCCGTTTG-----TCCCGGTGGAATTTCTCTGCTTGGTGGTGGATCTTTTGTACGTAGGTCATTCATTTTTCTTTT
-----C----TTCAAAGAAACATGTACATAAAAATGGTGTTTGGTTAATCAAG-----GGAGATATTATTATTCACAAAA
AGATTTTTTTTGCGGGTGACAC-AAAAAAGATATTAAAGTAGATATTCTTGTCAATTTTATCTGGT---TTCGGC-----
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-----------ATATGGTGCCATCTTCTTCCAGAG-AGAGTAGA------------------------------------
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-----------------------------------------------------------CTAGTGCATGTCGATCATATC
ATCACATGGG-CTTGTACTTTTGCCTTTTGCTTTGTGCATTTCAGAATCATGTGACATCGAGAAGAACCGGTGGACTAAT
CCAAA------CACACATGTTTTTCATATCATATTCACACAGTTGAGTTATTGTA---TCCTATCTTTTTTT--------
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--------CTTGGTGCAGGGTAGCATATATGCGTTGCTTTGCATAGTGCGTCAGACGGTGCATCAGCAGATGCGACTGAT
CAGTGGTTTATCAT----CAGGCCTATGAAGTGCCAACATTGGATATTTTGATGTTGATA--TC--TCCATTTGCATATG
AGCAAGAGTTCGACACGTTTGGGTTTGGCAACTTGGGACACCACCGTCTCGG----CCTGCCTTGCAAGCAAAAAGCGAC
ATATGGTGTTTGCTTGAAACACAAGGCAAGGAAATAAAACACACGAGCCATTGAGTGTCTAGATAAACAAA-CA------
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>chr3D_897
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-------------------------------------------------CACCGTTGCCCTAACCTCCCAATTGACAACT
CCATTTGTCCCATAATAAAGCGTTAGGCT-CCCCTCCGCTCCATCATTAGTACTACTCAACAGA------GGTAGATCGA
TGGGGCCGGCACCCTGCACCAATGGCCTCCTCA---TCGTCCTCCTCCTCGTGCTCGCCGTGGCCGACTTCGGGTCGGGG
CAGCAGAACC---------CGCCTCCGCCAGGGGCGTACTACACGGCGAAGTTCAGCCCATCCAGGGCCACCGTCATCAT
CGTCCTAATCGTCATCCTCGTCGCCTTCTTGTTCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCATCCACAACTGCC---
-----ATGGCGACACCTCCTACTCGGCCACTAGACTCCCGATAGGCGCCC---CCGCGGCGCGCCCGCGACGACAGCAGC
GCGGGCTCGACCCGGCCGT---CCTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAAGGAGCACAAGGCCGTCAAG
GGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCCAAGTGCTCCCACG-
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--------------------------------------------------------------------------TCTTCC
ACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACATGCCCGGTCTGCCGCGCGAACCTCGTCCCCGACG-----
-ACACCGACTTTCCGGGCACCGGCGGT---------GAGCTGTCGAGTGTCCATCCC-----------------------
----GCTTCGCGGCCGCCGCAAGAGGTGCCACCGTCAGCTTCTGCAACGGAGGCAGCTCCCACCGTCGTCATCGACGCGG
AGGAGAGTGAGGACGAGAGGATCATCCGGGAAGATACGGACGAACTGGCGCGCATCGGCAGCCTGAAACGCGCGCTGCGC
TCCAAGTCCAGCCGAGCGCCCA---CGCACTTCTCGCGTTCGCACTCGACGGGGCACTCGCTCGCTGCGCGAGCCAGCAG
CTGCACCGGCACGGGCGCCGGCGTCGAGAGGTTCACGCTGCGGCTACCCGAGCCGGAGCAC---------------GCGG
GCAGACTACGGCGCATGAAGAGCCTCGCCGTGTTCACTGCCGGCCGCCAGGGCAGCACGTACCGTTCCCTCCGACTAT--
-------GCG--------GCGACGGCAGCAGCCGCAGCGGGACGAGAGTCCGGCTCGGCCAGTCAGGCCGGTGGCCATCT
TTCTTGTCGCGGACTTTCTCCGCGGCGTGGGGGGCGAGGTCCACCCAGAGTGCCGAGTTGGACGGGTCGAGCAAGGGCGG
GAA----------GCCGGCGGCAAGTCAGTGGAGTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTA
ATTTGACC-GG------GCC------------------------------------------------------------
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>chr3B_948
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-----------------------A--GCT-CCCCTCCGCTCGATCATTAGTACTACTCAACAGA------GGTAGATCGA
TGGGGCCGGCACCCTGCACCAATGGCCTCTTCA---TCGTCCTCCTCCTCGTGCTCGCCGCGGCCGACTTCGGGTCGGGG
CAGCAGAACC---------CGCCTCTGCTAGGGGCGTACTACACGACGAAGTTCAGCCCATCCAGGGCCACCGTCATCAT
CGTCCTAATCGTCATCCTCATCGCCTTCTTCTTCTTGTTCTTCCTCTGCCTCTTCTTGGACTGCATCCACCACTGCTATG
GGCCTATGGCCACAACTCCTACTCGGCCACTAGACTCCCGATAGGCGCCG---CCGCAGCTCGCCCGCGACGGCATCAGC
GCGGGCTCGACCCGGCCGT---CCTTGAGACCTTCCCGACCATGGCGTACGCCGACGTGAAGGAGCACAAGGCCGTCAAG
GGCGCGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCCAAGTGCTCCCACGT
CGAATGCAGATTCTGTGAGCTTATGCACCCGGGCCTCACTATCCTAACGCTCCATTGTTGCTTTGAGATCTGTGCTACAC
AACTACCTTATTACATGGAATTTTCTCTTTTTTGTTCCTCTCATATAAAACATGTCTTGAACTTCAAACTTTGCAGTACA
ACATAACTTTGTAACTAGAATGTGAGATAAAACTTTCAGATTTTTTTGTCCGACATAAATATGAAAAAAATAAGATTTTT
TAATCAAATAAATCTTATTTTGTATATTTATGTTGGACCAAAAAATCTGTAAGTTTTATCCCACATTCTACATAGAAAGC
TTTGTTGTGCTGCAAAGTTGAAAGTACAAAAACATGTTCTATATGAGAGAAACAAAAAAGAGAAAATTATTTGCACGAAT
CCTGATGCAGAAATGAGTGGTTGGATAAGGAGTACCCGGGTGCATAGGCTCTAAAACATGTTTTCGCTCCCACGTCTTCC
ACCCGGACTGCATCGACACCTGGCTAGCCTCCCACGTCACCTGCCCGGTCTGCCGCGCAAACCTCGTCCCCAACG-----
-ACACCGACTTTCCGGCCACCGGCGAT---------GAGCTGTCGAGCGTCCATCCC-----------------------
----GCTTCGCAGCCGCCGCAAGAAGTGCCGCCGCCAGATTCTGCAACGGAGGCAGCACCCACCGTCGTCATCGACGTGG
AGGAGAGCGAGGACGAGAGGATCATCCGGGAAGAGACGGACGAACTTGCGCGGATCGGCAGCCTGAAACGCGCTCTGCGC
TCCAAGTCCAACCGAGCGCCCA---CGCACTTCTCGCGTTCGCACTCGACGGGGCACTCGCTCGCTGCGCCAGCCAGCA-
-----TCTGCACCGGCGCCGGCATTGAGAGGTTCACGCTGCGGCTGCCCAAGCCGGAGCAC---------------GCGG
ACAGACTACGGCGCATGAAGAGCCTCGTCGCGTTCACTGCCGGCCGGCAGGGCAGCACGTACCGTTCCCTCCGACTAT--
-------GCG--------GCGACGGCAGCAGCCGCAGCGGGACAAGCGTCCGGCTGGGACAGTCAGGCCGGTGGCCATCT
TTCTTGTCGCGGACTTTCTCCGCGGCGTGGGGGGCGAGGTCCACCCGGAGTGCCGAGTTGGGCGGGTCGAGCAAGGGCGG
GAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGAGTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTA
ATTTGACC-GG------GCC------------------------------------------------------------
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>chr3A_1155
--------------------------------------------------------------------------------
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--------TCGTCATCCTCATCGCCTTCTTCTTCTTGTTCTTCCTCTGCCTCTTCTTGGTCTGCATCCACCACTGCTATG
G--------CGACACCTCCTACTCGGCCACCAGACTCCCGATAGGCGCCG---CCGCGGCGCGCTCGCGACGACAGCAGC
GCGGGCTCGAGCCGGCCGTCGACCTTGAGACCCTCCCGACCATGGCGTACGCCGACGTTAAGGAGCACAAGGCCGTCAAG
GGCGCTCTGGAGTGCGCCGTCTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGCCTCCTGCCCAAGTGCTCCCACGT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTTCC
ACCCGGACTGCATCGACACCTGGCTTGCCTCCCACATCACCTGCCCGGTCTGCCGCGCGAACCTCGTCCCCAACG-----
-ACACCGACTTTCCGGCCACCGGCGAT---------GAGCTGTCGAGCGTCCATCCC-----------------------
----GCTTCGCAGCCGCCGCAAGAAGTGCCACCGCCAGCTTCTGCAACGGAGGCAGCACCCACCGTCGTCATCGACGCGG
AGGAGAGCGGGGACGAGAGGATCATACGGGAAGAGACGGACGAACTGGCGTGCATCGGCAGCCTGAAACGCGCGCTGCGC
TCCAAGTCCAGCCGCGCGCCCA---CGCATTTCTCGCGTTCGCACTCGACTGGGCACTCGCTCGCTGCGCGAGCCAGCAT
CTGCACCGGCCCCGGCGCCGGCGTCAAGAGGTTCACGCTGCGGCTGCCCGAGCCGGAGCAC---------------GCGG
GCAGACTACGGCGCATGAAGAGCCTCGTCGCGTTCACTGCCGGCCGCCAGGGCAGCACGTACCGTTCACTCCGACTAT--
-------GCGGCGAGCCGGCGACGGCAGCTGCCGCAGCGGCACGAGCGGCCGGCTGGGCCAGTCAGGCCGGTGGCCATCT
TTCTTGTCGCGGACTTTCTCCGCGGCGTGGGGGGCGAGGTCCACCCGGAGTGCCGAGTTGGACGGCTCGAGCAAGGGCGG
GAAGCCGGCCGGCGCCGGCGGCAAGTCAGTGGACTGCAAAGACCACTAGACCAGGCGTGCGCTGCTG-ACAACGTGTTTA
ATTTGACC-GG------GCC------------------------------------------------------------
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>chr6A_1295
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--GGGCTGGACGCCGCCGC---GCTCGAGGCGCTCCCCACCATGGCCTACGCCGACGTCAAGGCGCACAAGGTCGGCAAG
GGCGAGCTGGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGACACGCTCCGCCTCCTCCCCAAGTGCTCGCACG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------CGTTCC
ACGCCGACTGCATCGACGCCTGGCTCGCGTCGCACGTCACCTGCCCGGTCTGCCGCGCGAATCTCGTCCCCGGCGCCGAC
GCCCCCGT------GGCATCCGGCGCT---------GCTGCTGCGTCGGCGACGCCGGAGCGGGACGACGTAGCTGCTAC
GTTGGCGCCGCAGCCGGCGGAGGAAACGCCCACGGCGCCGCCGGAGCAAGTGACGGTGGTGATCACCGATGCT---GCCG
AGGAGACGGAGGAGGAGAGGGTCAGGAGGGAGGAGGCGGCCGAGCTGGTGCGTATCGGCAGCGTGAAGCGCGCGCTGCGC
AGCAAGTCCGGCCGGAGTCCCGCCGCGCAGTTCCCGCGCTCGCACACCACGGGGCACTCGCTCGCGG-------CAGCG-
-----CCGGCCGAGA-----GCGCGGAGCGGTACACGCTGAGGCTGCCCGAGCACGTCCTCCGAGAGGTCGTCGCGGCGG
GCAAGCTGCGGCGCACGAAGAGCCTCCAAGCGTTTCGGGAG---------------------------------------
---GGCCGCG--------CCGGCGGGAGCACGCGCCG-------------------------------------------
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>chr5A_2016
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------------------------------------------------------TGGGCCAGTCCGGGCGGTGGCCGTCG
TTCCTGTCGCGGACCTTCTCGGCGACGTGGGGGTCGAGGTCAACACGGAGGGCCGAGTCGGACGGGTCGAGCAAGGGCGA
AAAGCCGGCCGGCGCCAGCGGCAAGTCAGTGGAGTGCAAC--------GACCAGGCGTGCGCGGCTGGGCAACGTGTCTA
GTTTGACC-GG------GCCGTGGTCAAACGGTGCGTGCTTGCGCGCCGC-TTGCTGGGAATGGGAAGGAAACGGCCGTT
GCTTTCCGTTTG-----CCCCGGTGGAAATTCTCTGCTCGGTGGTGGATTTTTTGTAG---GGTCATTCATTTTTCTTTT
TTCTTCTTCATTCAA-GAAACATGTACATAAAATG-----GTGTTTGGTTAAATTAAAGTAGATATTATATC--------
-------------------CACAAAAAAAGATGTTAAAGGAGACATTCCTGTCAATTTTATCTGGT---TGTGGC-----
--------------------------------------------------------------------------------
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-----------ACACAGTGCTATATTCGTCGAGAAAAGAGTAGACTAGTGCACAGTGGCGTAGCCAGCCCGATTTGTCAG
GGTGGTCCGGTAATAGAAATATTTACACAAGTTTTGTTTTATTTTAAACGAAATGTTTTTTACTACACTATACATAAGCT
ATGGGGGAATTCCAGGGTGGTCCATGGACCACCCTGGCCACCCCCTAGCTACGCCACTGCTAGTGCATGTGGATCATATC
ATCACATGGTGCTTGCA-------CTTTTGCTTTGTGCATCTGAGAATCATGTGACATGGACAAGAACCGGTGGACTAAT
CCAAGTCCACTCACACATGGTTTTCATATCATATTCACACGGTTGAGTTATTGTA---TCCTATCCTTTTTTTTCTTGGT
GCGGGGCAGCATATGTGCGTGGCTTTGCATTTTGCATAGTGCGTCAGACGGTGCATCAGCAGATGCGACTAGCCAGTGGT
TTATCACCAGACAGACCTATGAAGTGCCAACGTTGGATATTTTGATGTTGATATCTCTCCATCTGCATATGAGCAAGAAT
TCGACACGTTCCGGTTGGGCACACCACCGTCTCGGCCTGCCTTGCAAGCAAAAAACGACATATGGTGTTTGCTTCAGGAA
CAAGGCAAGGAAATGATATGCATGAACCATTGAGTGTCTAGATGAATCAAACATAGGCATGATTGAGAAACACAACTAAA
TTATGAAGTGCTAGTATAAACTCTGGTGATTTCACATGTTTTCTTTTCTGAATAATTTGGTGTGCGGATCATTCTGGTAG
CCGGAAGCGCAATAAATGAACCGAAAACCCCAAATGTGAAGAATCTGGAAAATTTGTGAAGCCATCTTTTTGGAACCGTG
GTTGTCGCCTCCGCTTGGTCACCGCTCACCACCGCCTTTCAGTTACAAGTTGCACTTTGGTCGCTCACACGTTGGGCGTC
ATCGTCGAAAGTGGAACACTTTTTTATTTTATTTAGCTTTATCTTGTTAAACCCCTCAAATTTCTACTGTTGCAAACAAG
GTACTAATGATCAAGCAATGATCATTGATCAACCCTTGCTTAAAAAACACAAACAATTTTTTTAGGAGTTAAAAATACAA
ACAGTTTGGAATACTCTCATGGCGGCCTGGTGGGCCAGATGCACGATTAGAATATGCAACCCTATTTCAGGAACAAGTAA
CTAGTGGGAAAAAATTCTTCAGTAACAAAATCACCCCACCAACATTAGGTAAAGGACGCCCCATGGTAATCTTGAAAAGG
AAGGCGAGCATTTTGCTTCCCCTTCACTCATGAAGGTGATTTACACTCTAATTCGCCTTCGAGCGATCATGCTCTGATCG
TTGGCACATGAAACAACCATGAGACTTCCTATACAATGCCTTAAGCACGAGTTTTCTAAGGCACTGCTCATGCGCAAGGT
CATTTGGGTCGGCCCATTAAGCACGACCAATCGCTTCCCTCAACAACAACAAAACTCGCTCGCTCGCTCGCAGCTACTAT
CTCAGTCCTCACTTGAGCATTGGACCATTGACACAAATTTAGGGTGTGCATCATGTACCAGTTGGCCGGAAGCATCCTAT
CTTTTCTTCTTGGTGCAGGGCAGCATATATGCGTTGCTTTGCATAGTGCGCCAGACGGTGCATCAGCAGACGCGACTGGT
CAGTGGTTTATCACCAAACAGACCTATGAAGTGCCAGCGTTGGATATTTTGATGTTGGTATCTC--TCCATTTGCATATG
AGCAAGAATTTGACACGTTTGGG---------TTGGGACACCACCGTCTCGG----CCTGCCTTGCAAGCAAAAAACGAC
ATATGGTGTTTACTTCAGGAACAAGGCAAGGAAATAATATGCATGCACCATTGAGTGTCTAGATGAACAAA-CATAGGCA
TGATTGAGAAACACAACTAAATTATGAAGTGCTATTCTAAACTCTGGTGATTTCACATGTTTTCTTTCCTGAATAAGTTG
GTGTGCGGATCATTCTGGTAGCCGGAAGTGCAATAAATGAACCAAAAACCCCAAATGTAGAGAATCTGGAAAATTTGTGA
AGTCATCTTTTTGGAATAGTGGTTGTCGCCTCCACTTGGTCACCGCTCACCACCGCCTTTCAGTTACAAGTTGCACTTCG
GTCGCTCAC
>SNPs
--------------------------------------------S-----S---S---S---------S-----S----S
-----------------S--------------S--S-----S-------------------------S------------
----------S------------------------------SS--------------------SS--------------S
-----------------------SS--------S-----S--S--------------S--SSS---S--S----------
-------S--S-S-S--S---S-SSSSSSS--S------S-S-----------SS----------------S---SS---
S------S-S-----------------------------S----S--S---------SSSSSS---S------------S
----S-SS--S----SS-SS-SSS------------------------------------------------------S-
-----------S--------------S-----------------------------------------------------
-------------------------S---S-----------------SS---------SSS-------------------
---------------------------------------------------------S----------------------
---------S---------S-----------S---S-S-SSSSSSSSS-----SS------S------------------
-------SS--SS-S-SS--------------------------------------------------------------
--S--S----------------S-----------------S------------------------SSSSS----------
--------------------S---------SS------------------------------------------------
--------------------------------------------S-----------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------SSS---------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------------------------------------S-------------------
-----------------S-------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------S-----------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S----------------------------------SSS-----------
--------------------------------------------------------------------------------
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-----------------------------------------------------------S------------S-------
-------------------------------------------------------SSS-----------S----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------S-------------------------------------------S---------------
-----------S---S----S----S----------S-------------------------------------------
--S--------------S------------S----S------------------------SS------S-----------
----------------------------------S-S---------------------------------------S---
------------------------S---S--------------S--------------S---------------------
--S--------------S-------------------S------S-----------S-----------SS-----S--S-
---------
>forward_572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------GCCCCCAT
GCACTTCAAAAG--------------------------------------------------------------------
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---------
>reverse_2909
--------------------------------------------------------------------------------
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----------------------------CTTCTCTGCTTGGTGGTGGA--------------------------------
--------------------------------------------------------------------------------
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---------
