>input_sequence_57939
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------------------------------------------------------------------------------AT
GACGCCAGCCCCAAGA---AACCCCTTCTCGTCGGGCTTCCCGCACGCCGACGCCCACGCCGCCCAATCGACGCCAGTCC
CGACGTCTCCTGATGGCATCTTCCAGAGATATCTCTTGCCGCTGAAGAAGAGGGCGACGACTGCGAGC---------GAC
GGCAGCAGCGCCGACGATTCATTCGTGGTCCCGCTGAAGAAGAGACGGGTGGTGG---ACACCGGGGGCGAGGGCAC---
CTGCACC---AGCGCGATCCCGGTTCAGAGCCGGCCGAGGCGAACGGCGGCCTGCAACGTTGCGTACGTGAGCATGGAGG
AAGAAGAAGCCGGGA---CGTCAGCGGCCGGGGCGGCGGGATCGAAGAAGAA---------CAGGAACAGGAACAGGAAT
---------A------GCAG------TAGAAAGAACGGACCGCGGCCGGCGCGTGA---CGCCGCCCCGCTGGTCAACAG
GCCGCTGCACCTC----------AGCGAGGCGCAGCGGCAGCACCTCGAGACGCTCGGCGCCACGGCCCCGCAGTTCGTC
ATCATGAAGAGCCTCCAGATGAGCGACGTGGACCGCAACCAGAACCGGCTCCTCTTCTCGTGCAAGCGCGAGTTCCTCGA
GGGCCACCCCATCACCGGCATCTTAGCCGAGAAGGAGACGCGCCACGTGCACCATC---ACCGCGGGCTGAGCGTGGTTG
TCCAAGACGACCACAGCAACCAGTTCAATTTCACGCTCAAGTACCTCGACTCCAACGGCGGGTACCGCTTCATTGGCACC
GGCTGGAACGACTTCGTGTCCAAGAACAAGCTGGTGAAGGACGAT---------CTCCATTTTGTCGTCGAGGTGTGGGC
GTTCCGGTCGCCGGAGCTGCCC------GCGCAGCCCAAGGTTCCCGGCATCGAGGGGCTGCAGGGCCACCCTGACGGCG
CCCTCGGGTTTCTCCTCCGATTACATCACGACGAGAGCAGG---GACGTCCACCGCGGCG---------AGGAAGAAAGG
GAGTTTGCGCCGCGGCCGGTTCAGAAGAAGAAGAGACAGGCGCCGGCCAAGGCGGTGCGATCAAAGAAGCTTGCGGGTGG
------GCATGTGAGTCAGGGCCAAGCCGTGGCGAGGGACGTGACGAGGGCTGAGATAGTTGAGGCGGTTGGGGAGGAAA
TGGCGGATGCGTTGTTCGGGCTGTTGATGCTAAGGTCCAGTGGGCCCGTTCCGATGCTTCCCTTTGAAAAAACATCGACT
GCTCAGATTTGCTAG-----------------------------------------------------------------
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>chr3B_1_TraesCS3B01G310700
TCAAATTTGAAAAGAAGTTAATCAATTTTCAAAAAAGGTTTATCGGATTTAAAAAAGCATCATCAAAATCCGAAAAAAGT
GCACCGAA-------------------------------------------TTT----AAAAAAGTTCATCAATTTTTTA
AAAAGTTCATCAAATTCG---AAAAAAGTTCATCAAATTTTTAAAAAGTTCATCAAATTCGAAAAAAGTTCATCGATTCT
G--AAATAAGTTCACAAATCTATAAA-AGAGTTCTTCGTTTTTATTT--TTATTTTGCAAAAAATGAGAAAATTTCATTC
ATTTGCAAAAGAAAAAGAAAACAAAAAAGAAATGG--AAAAAAGGATAACAAAGAGAAGGAAAACCGGTCGTGATTTAGC
CAAAGAAT---AGGAGAAAAA--TGAGCGACTTGTCACATGGAATGGGTTG-------ACTCAAGTGGTTGCAGCGTTGC
TACCCTATGGTATAGGTTGCATGTTTGAATCCTTTGCTGCACTTCCT-TTTTTCCAGTTTTTACAGAAAAAGAGAAGGGA
AGGGGAAGAAACTGGACCGGTCCAAAATCATGCAGAGGGTGT-GC---GC----GCCCGTTAGCAAAATGCGCTGTAACG
GGCGCCTGCAGCGCCAAATAGGGTTTGCCGCCAAATAGGACATGCCGCGTTGAGGAGCGAGAGAGGCCCGCGAAAAGGCC
GGAAGC-ATATGGCCTGTAGACCCGTCCACCGCCTTTGTGCCACC-AAAATCCGCTTCTTAGCCATCTTTTCGTATGGTG
CACGGATCCACGGCCTGCCTATTCGAGGCCTGTACGTACCTGAAGCGGACTGGAGGGCCTGTTCCTACACCAAAAACTCC
CAGTTCTTCTCTCT-CAAGACAGGGCCCGCACGCCACGGA-------CCGTATCTGAAGCGGAGTTGGAGTCCCAAACTC
CCGATACATCTCTTCCTTCCTTTTTCGGCCG-TCAGACATATATATATA-CTTT----------------------ACCC
CTGTGTTGCGATCGCAAAACCTCCCCAAAACCAT------CTAGGTCTTCCAAATCTCGCATCTCCAACTCCGATCCAAT
GACGCCAGCCCCAAGA---AACCCCTTCTCGTCGGGCTTCCCGCACGCCGACGCCCACGCCGCCCAATCGACGCCAGTCC
CGACGTCTCCTGATGGCATCTTCCAGAGATATCTCTTGCCGCTGAAGAAGAGGGCGACGACTGCGAGC---------GAC
GGCAGCAGCGCCGACGATTCATTCGTGGTCCCGCTGAAGAAGAGACGGGTGGTGG---ACACCGGGGGCGAGGGCAC---
CTGCACC---AGCGCGATCCCGGTTCAGAGCCGGCCGAGGCGAACGGCGGCCTGCAACGTTGCGTACGTGAGCATGGAGG
AAGAAGAAGCCGGGA---CGTCAGCGGCCGGGGCGGCGGGATCGAAGAAGAA---------CAGGAACAGGAACAGGAAT
---------A------GCAG------TAGAAAGAACGGACCGCGGCCGGCGCGTGA---CGCCGCCCCGCTGGTCAACAG
GCCGCTGCACCTC----------AGCGAGGCGCAGCGGCAGCACCTCGAGACGCTCGGCGCCACGGCCCCGCAGTTCGTC
ATCATGAAGAGCCTCCAGATGAGCGACGTGGACCGCAACCAGAACCGGCTCCTCTTCTCGTGCAAGCGCGAGTTCCTCGA
GGGCCACCCCATCACCGGCATCTTAGCCGAGAAGGAGACGCGCCACGTGCACCATC---ACCGCGGGCTGAGCGTGGTTG
TCCAAGACGACCACAGCAACCAGTTCAATTTCACGCTCAAGTACCTCGACTCCAACGGCGGGTACCGCTTCATTGGCACC
GGCTGGAACGACTTCGTGTCCAAGAACAAGCTGGTGAAGGACGAT---------CTCCATTTTGTCGTCGAGGTGTGGGC
GTTCCGGTCGCCGGAGCTGCCC------GCGCAGCCCAAGGTTCCCGGCATCGAGGGGCTGCAGGGCCACCCTGACGGCG
CCCTCGGGTTTCTCCTCCGATTACATCACGACGAGAGCAGG---GACGTCCACCGCGGCG---------AGGAAGAAAGG
GAGTTTGCGCCGCGGCCGGTTCAGAAGAAGAAGAGACAGGCGCCGGCCAAGGCGGTGCGATCAAAGAAGCTTGCGGGTGG
------GCATGTGAGTCAGGGCCAAGCCGTGGCGAGGGACGTGACGAGGGCTGAGATAGTTGAGGCGGTTGGGGAGGAAA
TGGCGGATGCGTTGTTCGGGCTGTTGATGCTAAGGTCCAGTGGGCCCGTTCCGATGCTTCCCTTTGAAAAAACATCGACT
GCTCAGATTTGCTAGGACAAGAATTTGACGCAT----AACACTCGGACCGTATCGCACGCACA-----------------
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-TGTAGACTGTGCGATTTCAAATGGCTCCCAAAGATTTGGGTCCTATAGCTTTTACAATGTGA---ATCATTAATTTAGA
TAGAGTAGTTGTTCTCCGTCTTCTAAAATAAGAGTTTTAATCTCCATATTTGCCGTGTCCTTATTTTCAA-ACAACAATA
C--CATCCCGAGCGTAGCTTCAACTAGATCATC---GCTTTCTTTCAGTTCCTTAGTTTCCTGAGAACCAAATTCTCTGT
GCAGCTAACT----------AAATTCTATTCAAATGACGTTCAAGATACGCCGAGGCCAAAC-----AGGGAAGGAAGAA
TGACAACTCACCATTTTCCTAAAAAGGGCAAAAGACTTGCCGCATTCATCAATTAAGAGAATTATGAACAATTTGGCGCC
CGAGGGCGAGGACCGGTCTCACAAAAACCTACTCTTCGGCGTGATTGATGTGCACCCTTCGGCTTGGGTGGCTGTAGATT
TGGTGAAGACTTTGTGGAACCTAATTGCTTCCAACATGCCGCAATCTAGGCGGGCAATGATGCCTCCTTG--TGCTTATC
TCGTGGGAAATTTGAAAAGAGAGAAATGCCCGTGTCTACCATGACACTGCGGTGCTGTCTCGTGGTGGCAAAGTATTTGA
GTAATGTGAGG---------------------------------------------------------------------
---------------------------------------------------------------------------TGGTG
TAATTCGGCCTTTGGACAAAAACCTCTAAACCTTCTTATTCAATGGAAGTGGCGAATATTTTGCCCAGTCTTTGGAAAAA
AAACTCTAGCATATGGTATTACACAAATGGGTTGCACCCGCAAACCCCCAATTATTTGCCTCGCATCATATCGTAGACAT
GATTATGGTTGACGTTGCAAACTTGTTGCCGAAGATCCTTGCATTCCGCTCGTTTCAAAGCTCCCACGCCACCACAGCAC
GCCATGGCTAACATGGGAAACAATGCCACACGGTGCTACCCTTCTTACAGCTAACGGCATGAACACAAC--------ACA
ATCATGGCGGGCACC
>chr1D_1
TCAATT------------------------------------------TTGATAAAAAGTTCAGTGATTTCGAAAAACGT
TCATCAAATTTGAAAAAAGCGTTAATCGATTTTCAAAAAAAAAATCATCAATTT----AAATAAAATCATAAAATCTTAA
AAAAGTTCATTAAATTTGGAAAAAAAAGTTCGTCAAATTTTAAAAAAGTTCATCAAATTT-GAAAAAGTTCAACGATTCT
G--AAA-AAGTTCACAAATCTAAGAA-AGAGTTCATTGATTTTAATT--T--TTTTGCAAAAATTGAGAAAAGTTCACGC
ATTTGCAAAAGAAGAACAAAACAAAAAAGGAACAGAAAAAAAAAGATAAGAAAGAAAGAGAAATCCTGTCGCGATTTGGA
GAAGGAATAGAAGCAGAAAAA--TGAGCTTCTTGTCACAGGGTATGGTTTG-------TCCCCAGTGGTTGCAGCGTTGC
TACCTTATGGTATATGTTGCAGGTTCGAATCCTTCTCTGCACTCCTTTTTTTTTCAGTTTTTACAGAAAAAGAGAAGGGA
AGGG-AATGAACTGGGCCGGCCCAAAATGGCGCAGAGGGTGT-GC---GCAGGCGGCCGTTAGCAAAATGCCCTATAACG
GGCGCCTGCAGCGCCAAATAAGGTTTGCCGC-------------------------------------------------
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>chr6B_4
AATTTC----AAAAAAGTTCATAAAATTTGAAAATAGTTCATTAAAG-TTGAAAAAAAGTTCACCGAATTTGAAAAAAGT
TCATCTAATTTGAAAAAAT----------------------------------------------TTCATAAAAATTGAA
AAAAGTTCATCAAATTTGAAAAAAAA-GTTCACCGAATTAAAAAAAAGTTCACCGACTTT-AAAAAAGTTCATCGACTCT
GAAAAA-AAGTTCACAAATCTAAAAAGAGAGTTCATCGATTTTATTTTAT--TTTTGCAAAAATTGAGAAAAGTTCACGC
ATTTACAAAACAAAAAAGAAACAGAAAAAAGATA----------------AGAAAAAAAGAAAACCGATCGCGTTCTGGA
GAAT-AATAGAAGGAGAAAAAAATGAGCAACCTATCACATGAGTTGGGTTA-------TCCCAAGTGGTTGCTGTGTTGC
TACCGCATGGTGCAACTTGCAAGTTTGAATCCCTTCGGTGCACACC--TTTTTTCAGTTTTTACAGAAAAGGAGAAGGGA
AGGG-AAGGAACTGGGCCGGCCCAAAATAGCGCAGGGGGTTGCGCGCTGCAGGCGCCCGTTAGCAAAATGCCCTATAACG
GGCGCCTGCAGCGCCAAATAGGGTTTGCC---------------------------------------------------
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>chr3B_72
-----------------------------------------------------------------------GAAAAACGT
TCATCAAATTTGGAAAAAAAGTTAATCGATTTTCAAAAAAAGTTCATAAAATGTGGAAAAGATAGTTCATCGAATTTTGA
AAAAGTTCATCAAATTTGAAAG-------------------------------------------AAGTACATCGATTTC
TGAAAA-ACGTTCAGAAATGTAAAAA-AGAGTTCATCGATTTTATTTATT--TTTTG-AAAAATTGAGAAAAGTTCACGC
ATTTGCAAAAGAAAAAGAAAACAAAAAAGATT----------------AGAAAGAAAAAGAAAATCGGTCGCAATTTGGA
CAAAGAATAGAAGGAGAAAAA--TGAGCTACCTGTCATATGGGATGGGTTGTCCCAACTCCCAAGTGGTTGCAGCGTTGC
TACCTTATGTTATAGGTTGCAGGTTTGAATCCTTCACTGCACTCCTTTTTT--CCAGTTTTTACAGAAAAAGAGAAGGGA
AGGG-AAGGAACTGGGCCGGCCCAAAATCGCGCAGAGGGTGT-GCGCAGCAGGCGCCCGTTAGCAAAATGCCCTATACCG
AGCGCCTGCAACGCCAAATAGGGTTTGCCG--------------------------------------------------
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>chr3D_591
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----------------------------CGCCAAATAGGACATGCCGCGTCGAGGAGCCAGAGAGGCCCGCGAAATGGCC
GGAAGC-ATATGGGCTGTAGACCCGTCCACCGCCTTTGTGCCACC-AAAATCCTCTTCGTAGCCATCTTTTCGTACGGTG
CACGGATCCACGGCCTGCCTATTCGAGGCCTGTACGTACCTGAAGCGGACTGGAGGGCCTGTTCCTACACCAAAAACTCC
CAGTTCTTCTCTCT-CAAGACAGGGCCCGCACGCCACGGA-------CCGTATCTGAAGCGGAGTTGGAGTCCCGAACTC
CCGATCCATCTCTTCCTTCCTTTTTCGGCCG-TCAGTCT----TATATA-CTTC----------------------ACCC
CTGGGTTGCGATCGCAAAACCTCCCCAAAACCAT------CTAGGTCTTCCAAATCTCGCATCTCCAACTCCAATCCGAT
GACGCCAGCCCCAAGA---AACCCCTTCTCGCCGGGCTTCCTGCACGCCGACGCCCACGCCGCCCAATCGACGCCAGTCC
CGACGTCTCCCGATGGCATCTTCCAGAGATATCTCTTGCCACTGAAGAAGAGGGCGACGACTACGAGC---------GAC
GGCAGCAGCGCCGACGATTCATTTGTGGTCCCGCCGAAGAAGAGACGGGTGGTGG---ACACCGTGGGCGAGGGCAC---
CGGCTCCT---GCGCGATCCCGGTTCAGAGCCGGCCGAGGCGATCGGCGGCGTGCAACGTTGCGTACGTGAGCATGGAGG
AAGACGAAGCCGGGA---CGTC---------GGCGGCCGGGGCGAAGAAGAA---------CCGGAACAGGAACAGGAAT
---------A------GCAATGGCAATAGAAAGAACGGGCCGCAGCCGGCGCGTGA---CGCCGCCCCGCTGGTCAACAG
GCCGCTGCACCTC----------AGCGAGGCGCAGCGGCAGCACCTGGAGACGCTCGGCGCCACGGCCCCGCAGTTCGTC
ATCATGAAGAGCCTCCAGATGAGCGACGTGGACCGCAACCAGAACCGGCTCCTCTTTTCGTGCAAGCGCGAGTTCCTCGA
GGGCCACCCCATCACCGGCATCCTAGCCGAGAAGGAGACGCGCCACGTGCACCATC---ACCGCGGGCTGAGCGTGGTCG
TCCAAGACGACCACAGCAACCAGTTCAATTTCACGCTCAAGTACCTCGACTCCAACGGCGGGTACCGCTTCATTGGCACC
GGCTGGAACGACTTCGTGTCCAAGAACAAGTTGGTGAAGGACGAT---------CTCCATTTTGTCATCGAGGTGTGGGC
GTTCCGGTCGCCGGAGCTGCCC------GGGCAGCCCAAGGTTCCCGGCATCGAGGGGCTGCAGGGCCACCCTGACGGCG
CCCTCGGGTTTCTCCTCCGATTACATCACGACGAGAGCAGG---GACGTCCACCGCGGCGGCG------AGGAAGAAAGG
GAGTTTGCGCCGCGGCCGGTCAAGCAGAAGAAGAGGCAGGCACCGGCCAAGGCGGTGCGATCAAAGAAACAGCTTGCG--
-GGTGCGCATGTGAGTCAGGGCGAAGCCGTGGCGCGGGACGTGACTAGGGCTGAGATAGTTGAGGCGGTTGGGGAGGAAA
TGGCAGATGCGTTGTTCGGGCTGTTGATGCTAAGGTCAAGTGCCCCCGTTCCAATGCCTCCCTTTGAAAATACAACGTGT
GCTAAGGTTTGCTAGGACAAGAATTTGACGCAT----GACACTCAGACCGTATCGCACGCATA-----------------
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-TATAGATTGTGCGATTCCAAATGGCTCCCAAAACTTTGGGTCCT-----------------------------------
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>chr3A_621
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----------------------------------------------------------GAGAGAGGACCGGGAAAAGGGC
GGAAGCAATATGGGCTGTAGACCCGTCCACCGCCTT-GTGCCACCAAAAATCCACTTCTTAGCCATCTTTTCGTAAAGTG
CACG-ATCCACGGCCTGCCTATTCCAAGCCGGTGCGTATCTTAAGCGGACCCGAGGGCCTGTTCCTACACCAAAAACTCC
CAGTTCTTCTCTCT-CAAGACAAGGCCCGCACGACACGGACCGCGTGCCGTATCTGAAGCGGAGTTGAAGTCCCGAACTC
CCGATCCATCTCTTCCTTCCTTTTTCGGCCG-TCAGTCA----TATATAACTTC----------------------ACCC
CTCGGTTGCGATCGCAAAACCCCCCCAAAACCAT------CTAGGTCTTCCAAATCTCGCATCCCCAACTCCGATCCGAT
GACGCCGGCCCCAAGA---AACCCCTTCTCGCCGGGCTTCCTGCACGCCGACGCCCACGCCGCGCAATCGAACCCAATCC
CGACGTCTCCTGATGGCATCTTCCAGAGATATCTCTTGCAGCTTAAGAAGAGGGCGACGACTACGAGCA---------AC
GGCAGCAGCGCCGACGATTCATTCGTGGTCCCGCCGAAGAAGAGACGGGCGGTGG---ACACGGTGGGCGAGGGCACCAC
CGGCTCCT---GCGCGATCCCGGTTCAGAGCCGGCCGAGGCGAACGGCGGCGTGCAACGTTGCGTACGTGAGCATGGAGG
AAGAGGAAGCCGGGACGTCGTC---------GGCGGCCGGGGCGAAGAAGAA---------CCGGAATAGGAACAGGAAT
---------AGCAATGGCAG------TAGAAAGAACGGGCCGCGGCCGGTGCGCGA---CGCCGCGCCGCTGGTCATCAT
GAAGACGCAGCACCTGGAGACATAGCGAGGCATAGCGGCAGCACCTGGAGACGCTCGGCGCCACGGCCCCGCAGTTCGTC
ATCATGAAGAGCCTCCAGATGAGCGACGTGGACCGCAACCAGAACCGGCTGCTCTTCTCGTGCAAGCGCGAGTTCCTCGA
GGGCCACCCCATCACCGGGATCCTAGCCGAGAGGGAGACGTACCTCGTGCACGATCGGGACCGCGGGCTGAGCGTG----
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>chr5D_753
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--------------------------------TACGTATCTGAAGCGGACTCGAGGGCCTATTCCTACAGCAACT-CCCC
CGGTTATCCTCTCTCCAAGACAGGGCCCGTATGCCACGGACGACGGTACGTATCTGAAGCGGAGTTGTAGTCCCGA----
----TCCATCTCTTCCTCCCTTTTTCGGCCA-TCGATCA----TATGTATACTAAGTGATATATATACTTTGCCAAAGCC
GTCAGCTCCGATTGCAAAACCTCCTCAAAACCATCTACTACTAGGTCTTCCAAATCTCGCATCTCCAA------TCCAAT
GGCGCAAGCCCCGGGA---GATCCCTTCCCGTCGGGCCTCCGACACGCCGACACTGACGCCGCGCAATCACACG------
---------------------TCCGGAAATACCTCTTGCCCTTGAAGAAGAGGGCGGCGCCCACGAGCGACGGCAGCGAC
CGCAGCAGCGCCGACGGTTCGTTCGTGGTCCCACCGAAGAAGAGACGGGTGGTGGTGGACACCGGCGGCGAGGGCACCAG
CAGCACC---CACGCGATCCCGGTTCAGAGCCGGCCTAGGCGAGTTGCGGCGTGCAACGTTGCGTACGCGAGCATGGAGG
AAGAGGAAGCCGGCT---CGTCGGCGGCCGGGGCGGCGGGATCGAAGAAGAAGAATAGGAACAGGAACAGAAACAGGGAT
---------A------GCAG------TAGAAAGAAGGGACCGCGGCCGGCACGGTGCGCCGCCGCCCCGCTGGTCAACAG
GCCGCTGCACCTC----------AGCGTGGAGCAGCAGCAGCACCTCAGGTCGCTCGGCGCCACGGCCCCGCAGTTCGTC
TTCATGAAGACCCTCCAGAAGAGCGACGTGGAGCGCAACCAGAACCGGCTGCTCTTCTCGTGCAAGCGCGAGTTCATCCA
GGCCCACCCCATCACCTGGCTCCTCGCCGAGGAGGAGACGTACTTCGTGCATGAATGGGGCGACGGGCTGAGCGTGAGCG
TCATGGACGACCACGACAACCAGTTCAACTTCAAGCTCAAGTACCTCGACTCCAACGGCGGGTACCGCTTCATCGGCCCC
GGCTGGAAGGACTTCGTGGCCGAGAACAAGCTGCTGGAGCCGGTGAGCGACGGCCTTCGTTTTGTCATCGAGCTGTGGGC
GTTTCGGTCGCCGATGTTGCCC------GAGCAGCCCGAGGGTCCCGACGTCGAGGGCCTAAAGGGCCACCCTGACGGCA
CCCTCGGGTTTCTCTTCCGAGTGTATCAGGACGAGAGCAGG---GACGTCCAGCGCGGCAGCG------AGGAAGAAAG-
-----------GCGGCCGGTCCAGAAGACGAAGAGGCAGGCGCCGGCCAAGGCGGTGCCATCAAAGAAGCTTGCGGGA--
----------------CAGTGCCAAGCCGTGGCGTGGGACGTGACGAGGGCCGAGATAGTCGAGGCGGTTGGGGAGGAAA
TGGCGGATCCGTTGTTCGGGCTGTTGATGCTAAGGTCCAGTGGGCCCGTTCCAATGCTTAAATTTGAAAATACACCGTCT
GCTCAGATTTGCTAGGAGAAGAATTTGACGCATCCAGAACACTCGGACCGTATCGCACGCATA-----------------
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-TGCAGACAGATTGTGCGACTC-----CCCAACACTTCGGGTCCTAAATTTTTACACTGTGAATTTATCATTAATTTATA
TAGCCATTCTC--------CTTCTAAAAGAA--GAGTTAATCTCCATATTTGTCGTGTCCTTGTTTCCCGTACAACAATA
CAACATCCCGACCGTAGCTTCGACTAG---ATC---GCTTTCTTTCCGTTCCTTAATTTCCTGAG---------------
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>chr5B_753
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--------------------------------TACGTATCTGAAGCGGACTCGAGGGCCTATTCCTACAACAACT-CCCC
CAGTTATCCTCTCTCCAAGACAGGGCCCGTATGCCACGGACGACGGTACGTATCTGAAGCGGAGTTCTAGTCCCGA----
----TCCATCTCTTCCTCCCTTTCTCGGCCAATCAATCA----TATG------------TATATATACTTTGCCAAACCC
GTCAGTTCCGATTGCAAAACCTCCCCAAAACCATCTACTAGTAGGTCTTCCAAATCTCGCATCTCCAA------TCCAAT
GACGGAAGCCCCAAGAGATGATCCCTTCTCGTCGGGCTTCCGACACGCCGACACCGACGCCGCGCAACCACACG------
---------------------TCGAGAAATACCTCTTGCCGTTGAAGAAGAGGGCGGCGACCACGAGCGACGGTGGCGAC
CGCAGCAGCGCCGACGGTCCGTTCGTGGTCCCACCGAAGAAGAGACGGGTGGTGG---ATACCGGGGGCGAGGGCACCAG
CACCCACGTGCACGCGATCCCGGTTCAGAGCCGGCCCAGGCGAGTGGCGGCGTGCAACATTGCGTACGTGAGCATGGAGG
AGGA---AGCCGGGA---CGCCGGCGACCGGGGCGGCGGGATCGAAGAAGAA---------TAGGAATAGGAACAGGAAC
ATGAATAGCA------GCAG------TAGAAAGAAGGGACCGCGGGCGGCACGGGG---CGCCGCCCCGCTGGTCAACAG
GCCGCTGCACCTT----------AGCGTGGAGCAGCAGCAGCACCTCAAGACGCTGGGAGCCACGGCCCCGCAGTTCGTC
TTCATGAAGACCCTCCAGAAGAGCGACGTGGAGCCCAACCAGAACCGGCTGCTCTTCTCGTGCAAGCGCGAGTTCATCCA
GGCCCACCCCATCACCTGGCTCCTGGCCGAGGAGGAGACGTACTTCGTGCAAGAATGGGGCGACGGGCTGAGCGTGAGCG
CCATGGACGACCGCGACAAGCAGTTCAACTTCAAGCTCAAGTACCTCGACTCCAACGGCGGGTACCGCTTCATCGGCCCC
GGCTGGAAGGACTTCGTGGCCGAGAACAAGTTGCTGGAGCCGGTGAGCGACGGCCTTCATTTTGTCATCGAGCTGTGGGC
GTTTCGGTCGCCGTTGTTGCCC------GCGCAGCCCGAGGGTCCCGACGTCGAGGGTCTGGAGGGCCACCCTGACGGCA
CCCTCGGGTTTCTCTTCCGAGTGTATCACGACGAGAGCACG---GACGTCCACCGCGGCGGCG------AGGAAGAAAG-
-----------GCGGCCGGTCCAGAAGACGAAGAGGCAGGCACCGGCCAAGGCGGTGCCATCGAAGAAGCTTGCGGGTGC
CGGTGCGCATGCGAGTCAGGGCCAAGCCGTGGCGCGGGACGTGACGAGGGCTGAGATAGTCGAGGCGGTTGGGGAGGAAA
CGGCGGATGCGTTGTTCGGGCTGTTGATGCTAAGGTCCAGTGGCCCCGTTCCAATGCTTCCCTTTGAAAATGCATCGCCT
CTTCAGATTTGCTAGGAGAAGAATTTG-----------------------------------------------------
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>chr5A_1101
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---------------------TCGAGAAATACCTCTTGCCGTTGAAGAAGAGGGCGGCGCCCACGAGCGACGGTGGCGAC
CGCAGCAGCGCCGGCGATCCGTTCGTGGTCCCGCCGAAGAAGAGACGGGTGATGGTGGACACCGGGGGCGAGGGCAGCAC
CAGCACC---CACGCGATCCCGGCTCAGAGCCGGCCTAGGCGAGTGGCGGCGTGCAACGTTGCGTACGCGAGCATGGAGG
ACGAGGAAGCCGGCA---CGTCGACGGCCGGGGCGGCAGGATCGAAGAAGAAGAACAGGAACAGGA------------AT
---------A------GCGG------TAAAAAGAAGGGACCGCGGCCGGCACGGGGCGCCGCCGCCCCGCTGGTCAACAG
GCCGCTGCGCCTC----------AGCATGGAGCAGCAGCAGCACCTGAGGTCGCTCGGCGCCACGGCCCCGCAGTTCGTC
TTCATGAAGACCCTCCAGAAGAGCGACGTGGAGCGCAACCAGAACCGGCTGCTCTTCTCGTGCAAGCGCGAGTTCATCCA
GGCCCACCCCATCACCTGGCTCCTGGCCGAGGAGGAGACATACTTCGTGCATGAGTGGGGCGACGGGCTGAGCGTGGGCG
TCATGGACGACCACGACAAGCAGTTCAACTTCAAGCTCAAGTACCTCGACTCCAACGGCGGGTACCGCTTCATCGGCCCC
GGCTGGAAGGACTTCGTGGCCGAGAACAAGCTGCTGGAGCCGGTGAGCGACGGCCTTCACTTTGTCATCGAGCTGTGGGC
GTTCCGGTCGCCGTTGTTGCCCGCGCAGGCGCAGCCCGAGGGTCCCGACGTCGAGGGTCTGGAGGGCCACCCTGACGGCA
CCCTCGGGTTTCTCTTCCGAGTGTATCACGACGAGAGCAGGGACGACGTCCACCGCGGCGGCG------AGATAGAAAG-
-----------GCGACCGGTCCAGAAGACGAAGAGGCAGGCGCCGGCCAAGGCGGTGCCATCAAAGAAGCTTGCGGGTGC
CGGTGCGCATGTGAGTCAGGGCCAAGCCGTGGCGCGGGACGTGACGAGGGCTGAGATAGTCGAGGCGGTTGGGGAGGAAA
TGGCGGATGCCTTGTTCGGGCTGTTGATGCTAAGGTCCAGTGGGCCCGTTCCAATGCTTAAATTTGAAAATACATCGTCT
GCTCAGATTTGCTAGGAGAAGAATTTGACGCATCCAGAACACTCGGACCGTATCGCACGCATA-----------------
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-TGCAGACAGATTGTGCGACTC-----CCCAACACTTTGGGTCCTAAATTTTTACAC--TGAATTTATCATTAATTTATA
TAGCCATTCTC--------CTTCTAAAAGAA--GAGTTAATCTCCATATTTGTCGTGTCCTTGTTTCCCGTACAACAATA
CAACATCCCGACCGTAGCTTCGACTAG---ATC---GCTTTCTTTCCGTTCCTTAATTTCCTGAG---------------
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>chr3A_1642
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---------------------------------------------------------------------GAGCGTGGTCG
CCCAAGACGACCGCGGCAACCAGTTCAACTTCACGCTCAAGTACCTCGACTCGAACGGCGGGTACCGCTTCATCGGCCGC
GGCTGGAACGACTACGTGGCCAAGAACAAGCTGGTCAAGGACGAT---------CTCCATTTTGTCGTCGAGGTGTGGGC
GTTCCGGTCGCCGGAGCTGCCC------GGGCAGCCCAAGGTTCCCGGCATCGAGGGGCTGCAGGGCCACCCTGACGGCG
CCCTCGGGTTTCTCCTCCGATTACATCACAACGAGAGCAGG---GACGTCCACCGCGGCGGCGGCGGCGAGGAAGAAAGG
GAGTTTGTGCTGCGGCCGGTCCAGCAGAAGAAGGGGCAGGCACCGGCCAAGGCGGTGCGATCAAAGAAGCTTGTGGGTGG
------GCATGTGAGTCAGGGCGAAGCCGTGGCGAGGGAGGTGACAAGGGCTGAGATAGTTGAGGCGGTTGGGGAGGAAA
TGGCGGATGCGTTGTTCGGGCTGTTGATGCTAAGGTCCAGTGCCCCCGTTCCAATGCCTCCCTTTGAAAATACAACGTGT
GCTAAGGTTTGCTAGGACAAGAATTTGACGGAT----AACACTCATACCGGAAAATACTTGTCATCAAAATAAATAAATA
AAGATGTGTCTAGATGTATATTAGTTCTAGATACATCTTTTTTTATCCATTTTGATGATAAGTATTTTCGGACGGAGGAA
GTATAGATTGTGCGATTCCAAATGGCTTCCAAAACTTTGGGTCCTGAATTTTTACACCATGAATCATTAACGTATAC---
------AGTTGTTCTTCGTGTTTTAAAAGAATTGAGTTAATCTTCATATTCTTAT--------TTTCCAA-ACAACATTA
CAACATCCCGTGGGTAGCTTCAACTAG---ATCATCGCTTTCTTTCAGTTCCTTTGTTTCATGCGAACCAAATTCTCTGT
GCATCTTGCTATGCAGAGAAAAATGCTATTCGGATGATGTTCAAAACACGCTGAGGCCAGATGGCTTAGGAAAGGCAAAA
CAACAACCGATTATTTTGCCAA----------------------------------------------------------
-------------------------------CTCTTCGGCATGGTTGATGTGCACCCTTCGGCTAGGGTGGTTGTAGATT
CGGTGAAGACTCGGTTGAACCTAATTGCTTCCAACAT--CGCAATCTAGGCGGACGATGATGTCTCTTATTATGCTTATC
TCGTGGGAAATTTGAAGAGAGAGAAATGCCCGTGTCTTCCATGACACCATAGTGTTGTCTCGCGGTGGCAAAGTATTTGA
GTAATGTGATCATGGGCGGAGCTACAAGGGCACTTGGGTGTACAAATGTACACCCATTATTTTGCCAAAAAAGCATTGAG
TAAAGCTGTGAATTAGGGAGTTTGTACACCCATTGTATGAATGCTAGCTCCGAATATGATGCCGCGAGAGTAATATGGTG
TAATTCGGCCTTTGGACAAAAACCTCTAAATCTTCTTATACAAGGAAAGTGACAAATCTTTTGCCCAGTCTT---AAAAA
AAACTTGGGCAT--GGTATTATACAAATGGGTTGCGCCCGCAAGCCTCCAATTATTCGCCTCACACCGTATCTTAGACAT
GATTATGGTTGACGGCACACTC------------------GCATTCCGCTTGTTTCAAAGCTCCCATGCCACCACAGCAC
GCCACGACTAACATCGGAAACAATGCCACATGGTGCTACTCTTCTTACAGCTAACGGCATGAACACATGTAGTCAAGACA
ATCATGGCGGGCACC
>SNPs
----S-SSSS---S-----S--S--S---S----S--S-SSS-SSSSS--S-----SSS-SSS-SS---S----------
S--S-S-------------------------------------------------------------------S----S-
----------------S------------------------S-----------------SS-------------------
------S---------------S-----------S---S-----------SS-----------S--------S----SS-
---------------------------------S---------S-----S-----S--S------------S-----S-S
----------------------------S-------------S---------------S-S-------------------
----S----------------S-------------S-------S------------------------------------
----S---S------S----S--------SS----------------------------------------S--S-----
--------------------------------------------------S-----------------------------
-------------S---------------------------------------S---------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----S------------------------------S--SSSS----------S--------------------------
---S----------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------S-----------------
----------------------------------S---------------------------------------------
-S--------S----------------------------------------S----------------------------
----S-----------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--------------S--------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-----------------S------S--
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-----------------S---------------SS-----------S-SS---SSSSSSSSS----------------S-
---SSS---------S------------S--SS-SS----------------S---------S---S-------------
---------------------------SSS--------------------------------------------------
---S--SS----------------S------SS----S------S-S----S-------S-S--------S----S-S--
SS-----SS-SS-----S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S--------------------S------S--------
S----------SS--S---------------------SS--------------S-S------S---S-SS----------
----------------S--------------------S---------SSSS---S-------S-----------------
---------SS---------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S--------S---S-S-----S-S---S--------------SSS-----
-----SSS----SS-------S-------------S-------S--S---------S-----S--S-S----S-------
--------------SSS--SS-SSSSSSSSSSSSSSSSSS----------S---------------S-------------
----S-S-------S---------------S--------S---------------------------SS-----------
---------------
>forward_997
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTCCTTTTTCGGCCGTCAGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_2967
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CGAGGACCGGTCTCACAAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
