>input_sequence_57843
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------------------------ATGGCATTGGACGTGCTCCTCAGGCTGCTGATCCTCGCGGCCGTCGCGAGCGCCAT
GCCGATGCCGGGCGCCGCGGATCCCGCCGGCGCCGGGCTCGCCATCGGGTTCTACGACAAGACGTGCCCGAAAGCCGAGG
AGCTGGTGCTCGAGGAGATGCGGGACATCGTCCACGAGGACAGGACCCTCGGCCCGGCGCTGCTGCGGCTTCTCTTCCAC
GACTGCTTCGTCAGGGTGCGTGTTGCGCTGCTCT-TT----TGCCGTGCCGCGTCGCGTGCACGAGCCGTCTGGATATGT
TTTGCTTAACCTGAACTGGATGCGTGGTTTGCAGGGGTGCGACGGGTCGATCATGCTGAAATCGAGGAGCAAGAAGGGGG
AGAGGGACGCCAAGCCCATGAGCTACAGCCTCCGCGGCTTCCACGAGGTCGAGAGGATCAAGGCCAAGCTGGAGGACGAG
TGCCCGCTCACCGTCTCCTGCGCAGACATCATCATCATGGCCGCGCGGGATGCCGTGTACCTGGTAATTCAAGCAGATCG
ATAATCCCCCCCCTTCATCGGCTCCATGGATTTTCTCAAGCTTTCTTGTTACCTGACCAA---ACCGCCTCCTTG----T
TCCAGACCAACGGGCCACGGTTCCCGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCGTCGTGCGTCGACGCCGAGAAC
GACCTGGCGCCGCCGAACGCCAACATTGTGGACCTCAAGACCTACTTCAGCGTGAAGAACCTGTCGTGGAAGGACCTTGT
CGTGCTGTCGGGGAGCCACACGATCGGGAGGGCGCAGTGCAACGCGTTCGCGCCGGACCGGCTCTACAACAACAGCGGCA
AAGGGGTGCAGGACCCGACGCTGGACAAGGCGTACGCACCGGAGCTGCGGGAGAGGTGCGAGCCAGGCAACGAGAAAGAC
GAGACGCGCGTGGACATGGACCCCAAGAGCCCCTACGAGTTCGACCTCAGCTACTACCGGGACGTGCTCAGCAACAGGAC
TCTCTTCGTCTCCGACCAGGCGCTGCTCGACGACAAGTTGACGAGGGACTACGTGGCGAGGATGGCGGCCGCCGAGTCGA
CGGAGGAGTACTTCCATGACTACGCCGCCGCCATGATCAACATGGGCAGGATGGAGGTGCTCACCGGCGACAACGGGGAG
ATCAGGAAAATCTGCAGCGCGTACGTTGACTAA-----------------------------------------------
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>chr3D_1_TraesCS3D01G318500
TTGTAGAACAAAAAAGTCACAAAATCTTATACCTATTCCGTGTAACATAATAAATAGGTAGCCTCTTCTTGATTGCTAAA
CTAAATTGTAACTCGATTCAACCAAGGACATTTCCCTCCAGCATACAAATAAAGTAAGGAACAAATCAAGTATGGTGGCC
GTCAGATTTTAGAACTGGGTTCTGTTAAAAACAGTACTGTACTTTGACCTTGACAAGTCCTAGTTTGCGTAAACGGCGAT
AACCGGCAGGTGGAGTAGCTCACCACGAAGAACTGTATGCCTGCACAGCCTGTCC--------------------ACTAC
CCCTGGTCAGCACATCCACCAGAGACCAGTTAAAATGCATGCGCCTGAATATTTGTTTGTTCATTTGGTCAGCTCATTTT
CCATTAGATGCTCGCATACCTCTACAAATGCATCGATCGGTTCGTTAATATTGCCTTCATATATGCACTGCCATGTTCAA
CTGTTCATGGATGTGCAGAAAAGCTATCTCGCAGTCGGCCGA----GGCGTGTGAACGGCGTGCGTTGACAAGTGCAAAA
GCCCGCATCCACGACCGCCGTCCAGTCCAGACGCGGAACCAATCTGCTCGGCGCACTCGCGCCCCCTGGTCCAGTCTCAT
CTCATGTGCCGCGTGAAATGGGGG-AATTTTTGTTCCGTTCTGCTCCGCCTTTGCGCGTAGCCTCCAACACCCCATTCCC
ATTCCC----------A-----GCTAGCCAGCCATTGTCCGCCTCAGTTTTTAACTAACTTGCGAATTCCGAGCTTCTCG
ACAGCGATCGCCAACCCACCCGTGCCTCTCCAACTCTTTCTTTATTCTCGCCATTCCGG------GGTTTTCATGCGCGG
GCGGTCGACGCCGGCCAGCAAATTTAA------TCTC-------CTTCCCCTTCCGCGAGTTCCCGGCTGACCCGAAGCC
GAGAT-AGTTTCAACGCTTCTTGAGCTTCTGCTTCCCCTCGTCACGACCAAGCAACCTCG----TCGACAACTCGATTCG
GCTCTGTTCCTCCGGTCCGGCCGGATGGCATTGGACGTGCTCCTCAGGCTGCTGATCCTCGCGGCCGTCGCGAGCGCCAT
GCCGATGCCGGGCGCCGCGGATCCCGCCGGCGCCGGGCTCGCCATCGGGTTCTACGACAAGACGTGCCCGAAAGCCGAGG
AGCTGGTGCTCGAGGAGATGCGGGACATCGTCCACGAGGACAGGACCCTCGGCCCGGCGCTGCTGCGGCTTCTCTTCCAC
GACTGCTTCGTCAGGGTGCGTGTTGCGCTGCTCT-TT----TGCCGTGCCGCGTCGCGTGCACGAGCCGTCTGGATATGT
TTTGCTTAACCTGAACTGGATGCGTGGTTTGCAGGGGTGCGACGGGTCGATCATGCTGAAATCGAGGAGCAAGAAGGGGG
AGAGGGACGCCAAGCCCATGAGCTACAGCCTCCGCGGCTTCCACGAGGTCGAGAGGATCAAGGCCAAGCTGGAGGACGAG
TGCCCGCTCACCGTCTCCTGCGCAGACATCATCATCATGGCCGCGCGGGATGCCGTGTACCTGGTAATTCAAGCAGATCG
ATAATCCCCCCCCTTCATCGGCTCCATGGATTTTCTCAAGCTTTCTTGTTACCTGACCAA---ACCGCCTCCTTG----T
TCCAGACCAACGGGCCACGGTTCCCGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCGTCGTGCGTCGACGCCGAGAAC
GACCTGGCGCCGCCGAACGCCAACATTGTGGACCTCAAGACCTACTTCAGCGTGAAGAACCTGTCGTGGAAGGACCTTGT
CGTGCTGTCGGGGAGCCACACGATCGGGAGGGCGCAGTGCAACGCGTTCGCGCCGGACCGGCTCTACAACAACAGCGGCA
AAGGGGTGCAGGACCCGACGCTGGACAAGGCGTACGCACCGGAGCTGCGGGAGAGGTGCGAGCCAGGCAACGAGAAAGAC
GAGACGCGCGTGGACATGGACCCCAAGAGCCCCTACGAGTTCGACCTCAGCTACTACCGGGACGTGCTCAGCAACAGGAC
TCTCTTCGTCTCCGACCAGGCGCTGCTCGACGACAAGTTGACGAGGGACTACGTGGCGAGGATGGCGGCCGCCGAGTCGA
CGGAGGAGTACTTCCATGACTACGCCGCCGCCATGATCAACATGGGCAGGATGGAGGTGCTCACCGGCGACAACGGGGAG
ATCAGGAAAATCTGCAGCGCGTACGTTGACTAATCGACCCGGTGGTTGGTCGATGTGAGTTGGTGGCTTGGTGCAAGTGT
TTCGTCATGTGGACGGGGTCACGACGGCCGGTGTGGCCGCCAGCCGCAAGGCACTTGCATTATTCTAGGGGTGGTTAGAG
AATTG--------ACACCGCCACGCGGCGAATCTTCCTCTGTTTGTATGT-AAAAAAGTCATCTCTTTGTTCTTGACCGA
GTGCCCTTTGAGATTTGGCGAGTTGCAATTATATTTTTTTCGCTTAATTAACTAGTCACCTGCAGAAAGTATGAATACAT
TGCTGAGAGTATTTCAATCAGAGCCCTCGGTAGCT---------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------TAA
CTTAAGTGAGAGATTATCTTTTGAGGGATT-AAGTGCTACTAGTATCTAACAGATCCTACCCGCAAA-AAAAAG------
---TATCTAACAGATCCCTCAAATGTTTAGTTTCTTAAAAATATGGATTTTGATTCCTTAAAACTCAACCTCCAAGCCTA
TTTTTCTCTAGGAAAGTCACTTCTCGGTAAAAATGAGAATGAACAGTGCCGCGCGTGGGCCGTGGGCCGTGGCCACTGTT
GCCGCCTCATGTGGGGCCTTCCGACAGCCTCGCCTCCCTCCAACCACCGCCTTCGGTGAGATTCTAGTAAACATATTTTA
CGTTTTC-TCGTCGTCTCCGACCACGGCGACGCTTCTCCTCGGCGTCCCCTA----GCAACGCTCCTTCGTGTCGTTCCC
GGCAACAAGTAAACCGAGAGATCTCGGAGTCGGATCCACTGTTCGCCATGCCAAAGAAGGCCGGAGTTCATTGGACAGGA
GCTTGGGGACAGAGGGAAGTGAAGTGGGGTGGCTAGAGTTTGGTCCAGAGGACGGATAGGGATGAAAATACCAAGACGAC
GCTTTCTCCTTGACGTCCCCGGCCCGGTAGTTCTTCTTCTTG--GTTCCCGGCAACAAGCAAACCGGGAGATCTCGGAGT
CTGATCCACTGCCCGCCATGCCAAGGAAGGCTGGAGTTCGCTTGACAGGAGCTTGGGGATGG
>chr3B_6
GAACAAATAAATCGCG------AATCTTATAACTATTCCACGTAACGTAATAAATATGTAGCCCATGC-TGATTCCTAAA
ATAAATTGTAACCCAATCCAACCAAGGACATTCCCCTCCAGCATACAAATAAACTAAGGAGCAAATCAAGTA---TGGCC
GTCTGATTCTACGATTGGGTTCTGTTAAACACATCACTGTTCTTTGACCTTGACAAGTTCTAGTTTGCGTAAACGGCGAT
AACAGGCAGGTGGAGTAGCTTACCACGAAGAAGCGTATGCCTGCACAGCCTGTCATCCGCCCGTGCTACACGCCAACTA-
CCCTGGTCAGCACGGCCACCAGAGACCAGTTAAAATGTAGGCGCCTGGATATTTGTTTGTTCATTTGGTCAGCTCATTTT
CCATTAGATGCTCGCATGCCTCTACAAATGCATCGATCGGTTCGCCAATCTTGCCTTCATATATTCACTGCCATGTTCAA
CTGTTCATGGATGTGCAGAAAAGCTATATCGTAGTCGGCCGA----GGCGTGTGAACAGCGTGCGTTGACAAGTGCAAAA
GCCCGCATCCACGACCGCC-----GTCCAGACGCGGAACCAATCTGCTCGGCGCACTCGCGCCCCCTGGTCCAGTCCAGT
CTCATGTGCCGCGTGAAATGGGGGGAGGTTTTGTTCCCTTCTGCT-CGCCTTTGCGCGTAGCCTCCACCACCCCATTCCC
ATTCCCGTTCCCAGCTA-----GCTAGCCAGCCATTGTCCGCCTCAGTTTTTAACTAACTTGCGAATTCCGAGCTTCTCG
ACAGCGATCGGCAACCCACCCGTGCCTCTCCAACTCTTTCTTTATTCTCGCCATTCCGG------GGTTTTCATGCGCGG
GCGGTCGACGCCGGCCAGCAAATTTAATCTTCTTCCC-------CTTCCCCTTACGTGAGTTCCCGGCTGACCCGA----
--GAT-TGTTTCAACGCTTCCTGAG-AGCTGCCTCCCCTCGTCACGACCAAGCAACCTACTTGCGGCTCTTC--------
-------TCCTCCCGTCCGGCCGGATGGCATTGGACGTGCTCGTCAGGCTGCTGATCCTCGCGGCCGTCGCGAGCGCCAT
GCCGGTGCCGGGCGCCGCGGATCCCGCCGGCGCCGGGCTCGCCATCGGGTTCTACGACAAGAGGTGCCCGAAAGCGGAGG
AGCTGGTGCTCGAGGAGATGCGGGACATCGTCCACGAGGACAGGACCCTCGGCCCGGCGCTGCTGCGGCTTCTCTTCCAC
GACTGCTTCGTCAGGGTGCGCATTGCGCTGCTTTCTT----TGCCGTGCCGCGTCGCGTGCACGGGCCGTCTGAATGTGT
TTTGCTTAACCTGAACTGGATGCGTGATCTGCAGGGGTGTGACGGGTCGATCATGCTGAAATCGAGGAGCAAGAAGGGGG
AGAGGGACGCCAAGCCCATGAGCTACAGCCTCCGCGGCTTCGACGAGGTCGAGAGGATCAAGGCCAAGCTGGAGGACGAG
TGCCCGCTGACCGTGTCGTGCGCAGACATCATCATCATGGCCGCGCGGGACGCCGTGTACCTGGTAATTTAAGCAGATCG
ATAATCCCCCCTTTCATGGCAA-CCATGGATTTTCTCAAGCTTTCTTTTTAGCTGACCAA---ACTGCCTCGTTG----T
TCCAGACCAACGGGCCACGGTTCCCGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTCATGCCTCGACGCCGAGAAC
GACCTGGCGCCGCCGAACGCCAACATTGTGGACCTGAAGACCTACTTCAGCGTGAAGAACCTGTCGTGGAAGGACCTCGT
CGTCTTGTCAGGGAGCCACACGATCGGGAGGGCGCAGTGCAACGCGTTCGCGCCGGACCGGCTCTACAACAACAGCGGCA
AAGGGGTGCAGGACCCGACGCTGGACAAGGCGTACGCTCCGGAGCTGCGGGAGAGGTGCGAGCCAGGCAACGAGAAAGAC
GAGACGCCCGTGGACATGGACCCCAAGAGCCCCTACGAGTTCGACCTCAGCTACTACCGGGACGTGCTCAGCAACAGGAC
CCTGTTCGTCTCCGACCAGGCGCTGCTCGACGACAAGTTGACGAGGGACTACGTGGCGAGGATGGCGGCCGCCGAGTCGA
CGGAGGAGTACTTCCATGACTACGCCACCGCCATGATCAACATGGGCAGGATGGAGGTGCTCACCGGCGACAACGGGGAG
ATCAGGAAAATCTGCAGCGCGTACGTTCACTAATCGACCCGGTGGTTGGTCGATGTGAGTTGGTGGCTTGGTGCAAGTGC
TTCGTCATGTGGACGGGGTCACGACGGCCGGTGTGGCCGCCAGCCGCAAGGCACTTGCATTATTCTAGGGGTGGTTAGAG
AATTG--------ACACCGCCACGCGGCGAATCTTCCTCTGTTTGTATGTAAAAAAAGTCGTCTCTTTGTTCTTGACCGA
GTGCCCTTTGAGATTTGGCGAGTTGTAATTATATTTTTTTCGCTTAATTAACTAGTCACCTGCAGAAAGTATGAATACAT
TGCTGAGAGTATTTCAATCAGAGCCATCGGTAGCTTAAGGCCCTGTTTGGTTCATAAGTCCTAAGACTTTTTTAGTCCCA
ATTTATACGTCTCAAGTACCTAAAAAGTCCCTACATGTTTGGTTCCTGAGACTTAACATGGACTAGAAGGCCAATTACAA
CTATAAGTCCCTATAAGTCCCTCCTTGAGAGTCTTATTTCATAAGTCCCAAATGCCCACTTTAAGTCCCTATAAATCCCT
CCTGTTTGGTTTAGATGGGACTTATATAGACTTTTTTAAGTCCCTAAATCAATAAGTCCGTGGAAACAAACACCCTCTAA
CTTAAGTGAGAGATTATCTTTTGAGAGATT-AAGTGCTACTAGTATCTAACAGATCCTACCCGCAAAAAAAAAG------
---TATCTAACAGATCCCTCAAACGTTTAGTTTCTTAAAAATATGGATTTTGATTCCTTAAAACTCAACCTCCAAGCCTA
TTTTTCTCTTGGAAAGCCACTTCTCGGTAAAAATGAGAATGAACAGTGCCGCACGTGGGCCGTGGGCCGTGGCCACTGCT
GCCGCCGCCTGTGGGGCCTTCCGACAGCCTCGCCTCCCTCCAACCACCGCCTTGGGTGAGATTCCAGTAAACATATTTTT
ACGTTTTTTCGTCGTCTCCGGCCACGGCGACGCTTCTCCTCGGCGTCCCTGGCCTGGCAGCGCTCGTTCGTGTCATTCCC
GGCAACAAGCAAACCGGGAGATCTCGGAGTCGGATCCACTGCTCGCCATGCCGAAGAAGGCGGGAGTTCATTGGACAGGA
GCTTGGGGACAGAGGGATGTGAAGTGGGGTGGCTTGAGTTTGGTCCAGAAGACAGATAGGGATGAAAATACCAAGACGAC
GCTTTCTCCTCGACGTCCCCGCCCCGGTAGTGCTTCTTCTTGTTGTTCCCGGCAACAAGCAAACCGAGAGATCTCGGAGT
CTGATCCACTGCCCGTCATGCCAAGGAAGGCTCGAGTTCGCTTGACAGGAGCTTGGGGATGG
>chr3A_156
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TGGCC
GTCTGTTTCTACTATTGGGTTCCGTTAAACACAGCACTGTGCTTTGACCTTGACAAGTTCTAGTTTGCGTAAACAGCGAT
AACCGGCAGGTGGAGTAGCTTACCACGAAGAAGCGTATGCCTCCGCAGCCTGTCCTCCGCCCGTGCTACACGCCAACTGC
CCCTGGTCAGCACAGCCACCAGAGACCAGTTAAAATGCATGCGCCTGAATATTTGTTTGTTCATTTGGTCAGCTCACTTC
CCATTAGATGCTTTTATGCCTCTACAAATGCATCGATCGGTTCGTCAATCTTGCCTTCATATATGCACTGCCATGTTCAA
CTATTCATCGATGTGCAGAAAAGCTATCTCGTAGTCGGCCGAGTATGGCGTGTGAACAGCGTGCGTTGACAAGCGCAAAA
GCCCGCATCCACGACCGCCATCCAGTCCAGACGCGGAACCAATCTGCTCGGCGCACTCGCGCC------TCCAGTCCAGT
CTCATGCGCCGCGTGAAATGGGGGGAATTTTTGTTTCCTTCTGCT-CGCCTTTGCGCGTAGCCTCCAACACCCCATTCCC
GTTCCC----------AGCTGTGCTAGCCAGCCATTGTCCGCCTCAGTTTTTAACTAACTTGCGAATTCCGAGCTTCTCG
ACAGCGATCGCCAACCCACCCGTGCCTCTCCAACTCTTTCTTTATTCTCGCCATTCCGGCTCCGGGGTTTTCATGCTCGG
GCGGTCGACGCCGGCCAGCAAATTTAATCTCCTTCTCTTGATCTCTTCCCCTTCCGTGAGTTCCCGGCTGACCCGA----
--GTTAAGTTTCAACGCCTCCTGAGCAGCTGCTTCCCCCCGTCACGACCAAGCAACCTCGCTCGTCGACGACTCGATTCG
GCTCTGTTCCTCCGGTCCGGCCGGATGGCATTGGACGTGCTCCTCAGGCTGCTGATCCTCGCGGCCGTCGCGAGCGCCAT
GCCGGTGCCGGGCCCCACGGACCCCGCCGCCGCCGGGCTCGCCATCGGGTTCTACAACAAGACGTGCCCGAAAGCGGAGG
AGCTGGTGCTGGAGGAGATGCGGGACATCGTCCACGAGGACCGGACCCTCGGCCCGGCGCTGCTGCGGCTTCTCTTCCAC
GACTGCTTCGTCAGGGTGCGTGCTGCGCTGCTTCTTTGCCGTGCCGTGCCGCGTCGCGTGCACGGGTCGTCTGAATGTGT
TTCGCTTAACTTGAACTGGATGCGTGGTCTGCAGGGGTGCGACGGGTCGATCATGCTGAAATCGAGGAGCAAGAAGGGGG
AGAGGGACGCCATGCCGATGAGCTACAGCCTCCGCGGCTTCGATGAGGTCGAGAGGATCAAGGCGAAGCTGGAGGACGAG
TGCCCGCTCACCGTGTCCTGCGCAGACATCATCATCATGGCCGCGCGGGACGCCGTGTACCTGGTAATTTAAGCAGATCA
ATAATCCCCCCTTTCATGTC-CTCCATGGATTTTCTCAGGCTTTCATTTTAGCTGACCACCAGACTGCCTCCTTGTTTCT
TCCAGAGCAACGGGCCACGGTTCCCGGTGGAGACCGGGCGCCGGGACGGCAAGGTGTCCCTGTGCATCGACGCCGAGAAC
GACCTGGCGCCGCCGCACGCCAACATCGTGGACCTGAAAACCTACTTCAGCGTGAAGAACCTGTCGTGGAAGGACCTGGT
GGTGCTGTCGGGGAGCCACACGATCGGGAGGGCGCAGTGCGCGGCGTTCGCGCCGGACCGGCTCTACAACAACAGCGGCC
TAGGGGTGCAGGACCCGACGCTGGACAAGGCGTACGCCCCGGAGCTGCGGGAGAGGTGCGAGCCAGGGAACAAGGAAGAC
GAAACGCTCGTCGACATGGACCCCAAGAGCCCCTACGAGTTCGACCTCAGCTACTACCGGGACGTGCTCAGCAACAAGAC
CCTGTTCGTCTCCGACCAGGCGCTGCTCGACGACAGGTGGACGAGGGACTACGTGGCGAGGATGGCGGCCGCCGAGTCGA
CGGAGGAGTACTTCGAGGACTACGCCGCCGCCATGATCAACATGGGCAGGATGGAGGTGCTCACCGGCGGCAACGGGGAG
ATCAGGAAATTCTGCAGCGCGTACGTTGACTAATGGAGCCGGCGGTTGGTCGATGTGAGTTGGTGCGCGTGCCTCCATCG
ATCGTCATGTGGACGGGGTCACGACGGCCGGTGTGCCCGCCAGCCGCAAGGCACTTGCATTATTCTAGGGGTGGTTAGAG
AATTGACACCGTCACACCGCCACGCGGCGAATCTTCCGGTGTATGTA---AAAAAAAGTCGTCTCTTTGTTCTTGACCGA
GTGCCCATTGAGATTTGGCGAGCTGTAATTATAATTTTTCTCCTTAATTAACTAGTTACTTGCAGAAAGTATGAATACAT
TGCTAAGAGTATTTCTAGCAGAGCCCTCGATAGCT---------------------------------------------
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-----------------------------------------------------------------------------TAA
TTTAAGGGGGAAATTATCTTTTGAGGGATTTAAGTGCTACTCCTATCTAAGTT----------CAAAAAAAAAGTGCTAC
TTCTATCTAACAGATCCCTCAAATGTTTAGTTTCTTAAAATCATGGATTTTGATTCCTCAAAGCTCAACCTCCTAGCCTA
TTTTT---------------------------------------------------------------------------
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>SNPs
SSSS-S-SS--SSSS-SSSSSS---------S-------SS-----S---------S------SS-S-S-----S-----
S-----------S-S--S--------------S--------------------S------S-----------SSS-----
---S----S--SS-S--------------S----S-----S-----------------S---------------------
--------------------S-----------SS----------------------------------------------
--------------S-----------------------------------------------------------------
-----------------S---------------------------S---S------------------------------
-------------------------------S-------------------------S----------------------
-------------------S--------------------------------------------------------SSS-
-------------------------------------S-------S----------------------------------
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--------------------------------------------------------S-------------------SSSS
SS------------------S-----SS-----------------------------------------S----------
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----S----------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------S-------------------------------S--------S--S---
----------------------------S---------------------------------------------------
-----------------------------------------S--------------------------------------
--------------S-----------------------------------S------------------S----------
-----------SS-SSSSSSS--------------------------S---S-------------S--------------
----------------------------------------------------------S------S--------------
-----------------------------------S-----------------------------------------S--
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-------------------------------------S------------------------------------------
-------S------------------------------------------------------------------------
S--S----------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
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------------------------------------------------------------S-------------------
-------------------------S------------------------------------------------------
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---------S------S-----------------------------------S-------------------------S-
------S-S--------------------------------------------S----------S--------------S
SSS---S-------------S----------------------------SSS-------S-----S--------S-----
---------S------S------------------------S----------S--------S------------------
-----------------S----------------S--------------S---S--------------------------
----------S----------S---------S----------------------------------S-------------
---------------S----------------S-----------------------------
>forward_335
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---------------------------------------------------------------------------ACTAC
CCCTGGTCAGCACAT-----------------------------------------------------------------
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>reverse_1648
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-----------------------------------------------GTTACCTGACCAAACCGCCT-------------
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>forward_1389
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---------CCTGAACTGGATGCGTGGTT---------------------------------------------------
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>reverse_3378
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-----------------AGTGAAGTGGGGTGGCTAGA-------------------------------------------
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