>input_sequence_57808
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-----------------------------------------------------------ATGCAGCTAACAATGGCTTCC
AGTTTGCAGCCATGGTTTCTCCTCCTCCTCCTCCCCCTCCTCTCTTTGGTGCTTAGCCTGGCAGCGCCTGCGGCGGTGTT
CAACGACAACTTCGTGGCGGTAGGGGGTACAGATGCTAATCACCTAGTTAATCAGGGGACATCAGTTCGCCTCGTCTTGG
ATAGGAGCTCCGGTACGTATCAACTTTTTCTCCTACGCATCGATGATCAGGAGATTATGCTAATCATGTGGTTTTA----
A-TATACTAAATTAAGTTGAACC---------------------------------------------------------
--AAATTGCGATGTATTGAAAAGTTGACGCAATTTGAGTGGATTTGAGCCAAAACTTGTATCTTTGCGTTGGATGCAGGG
GCTGGATTTAGTTCCAAGGTGGCGTATGGTTCAGGGTGGATCCAAATGAGGATCAAGATACCCGCTGGGTACACTGCTGG
GGTTGTAACGGCCTTCTATGTGAGTGTTGTGA--------------------CATTTTGC--------------------
A-----TAGCCATTTCATTCCGTT---TGATGAAAA---CTAGAACTCAG------------------------------
-------------------------------------ATGTATTTTATGTAT--TCTTG------TAGCTCACGTCGGAG
CCCGAGTACGGTGACCACGATGAGGTGGATTTCGAGTTCTTGGGCAACGTGGAGGGCAAGCCGGTGGCTCTCCAGACCAA
CATCTTCCTGAACGGCAAAGGCGAGAGGGAGCAGAAGTTCGACCTTTGGTTTGACCCGGGTGCCGATTTCCATGAGTACA
AGATACTCTGGAACCCCTACCAGCTCGTGTAAGCCCATCCATCATCCATAATCA--TTC-------TCCAATCTGCTCTA
GCGGATCAATGTATATA-------CAATATCACGTGCACCTTGACT----GCAGTATGTTTGTCGACGACACGCCCATAC
GGGTGCTGAAGAACCTCACGCCCGG------------CCAGTTCCTGGTGAGGCCGATGAAGATCCGGGGGAGCCTCTGG
GACGGCTCTGATTGGGCGACGGACAATGGCAAATACAGGGTCGACTATAACCGTGCGCCGTTCACCGCCGTGTTACAGGG
TTTCGACGTCTACGGCTGCCCTGCCACCGGAGGCGCGCCGTGTGGCTCACTGAGCCTGTCGTGGAACGCGATTCGGAGCC
TGACGCCCGCGCAGGAGGCGGCGTACAAGAACGCCAAGAGCAAGTACATGACGTACGACTACTGTACCGATAAGTCTAGG
CCCAACTTTCATCTACCAGGGGAGTGCAACAATAACTAA-----------------------------------------
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>chr3D_1_TraesCS3D01G084000
TTCACATGAATTTATTGTGTTAACAAATATTTATTGCCAAAGAAAAAAAGAACATTAATTACCGACTATGAATTTACCGA
ATTATGAAATATTGTTCTGATTTGACCGGTCAGATAAAAACCATTACGAAATAAAATCAGGAGGGATGAAAAACTGATGC
GGGCCGCGGCATTATACGGGGTCTGCTAGAGATGCTCCAAGGGTGGATGTACCGTAGGAAGGGAGGGTGGACAAAGGATC
GATGGTTGGGAAAAAATTACGTTAGATGGAACCTTACATCTTTTTTTAGGGGTACGTCTATTTTAAATTTTAGATTAGAT
GATATAATAATAGAAAAAATAGAGAAGGTGCTATGGTTTTGTGATGGAACCTTACGTCATCTTTTAGATTTTTAAAAATT
GACGTAAAATGGAACATTACAATATTTTTAGATAATATATGTAAAAAATAGAGAAGGCGCTATGGTTTTGAGATGAACAG
AGAAGATATATATTTCGCATTTTATAA-TCAATTCCAACTTCATACAAGAGCAA------GGGATGGTCCAGATATTAAA
ATTATAGGCAACAATTCATAATAAATCAACGATAATAATATGCCAAATATAGCAAATAAATCTTATTGGGAATTTACAAG
TGCGT-GCAAAATAATTGTAAAACTATCAAACAGTACATATCACTAATTTATTGCG-GCCAAAAATGCAATGTTTGAGAA
TATGCTATTTTTAGCAAAAAATGATTCTATAAGATACGTCTATTACTTTCTAGTGTGTGGCAATTAACCATTTTAAATGC
CCAGTAATTTTCATTTTCGCCAACTATTTATTTACTGCCATTTCTAGCCGATCAAT--TTTCAAAATAGCGTAAAAACAT
GCATGCATGG----CGTGAGTGTACGTGGCACATCTACCCTTATATAAGGGTCATGGCGTGAGTGGAGCATTGTGGGAAC
GAGCTCAGAAACCTGGTTAAGCAGGAAGCACAAACGTAGATAGATCTG----TTGGCCAATGCAGCTAACAATGGCTTCC
AGTTTGCAGCCATGGTTTCTCCTCCTCCTCCTCCCCCTCCTCTCTTTGGTGCTTAGCCTGGCAGCGCCTGCGGCGGTGTT
CAACGACAACTTCGTGGCGGTAGGGGGTACAGATGCTAATCACCTAGTTAATCAGGGGACATCAGTTCGCCTCGTCTTGG
ATAGGAGCTCCGGTACGTATCAACTTTTTCTCCTACGCATCGATGATCAGGAGATTATGCTAATCATGTGGTTTTA----
A-TATACTAAATTAAGTTGAACC---------------------------------------------------------
--AAATTGCGATGTATTGAAAAGTTGACGCAATTTGAGTGGATTTGAGCCAAAACTTGTATCTTTGCGTTGGATGCAGGG
GCTGGATTTAGTTCCAAGGTGGCGTATGGTTCAGGGTGGATCCAAATGAGGATCAAGATACCCGCTGGGTACACTGCTGG
GGTTGTAACGGCCTTCTATGTGAGTGTTGTGA--------------------CATTTTGC--------------------
A-----TAGCCATTTCATTCCGTT---TGATGAAAA---CTAGAACTCAG------------------------------
-------------------------------------ATGTATTTTATGTAT--TCTTG------TAGCTCACGTCGGAG
CCCGAGTACGGTGACCACGATGAGGTGGATTTCGAGTTCTTGGGCAACGTGGAGGGCAAGCCGGTGGCTCTCCAGACCAA
CATCTTCCTGAACGGCAAAGGCGAGAGGGAGCAGAAGTTCGACCTTTGGTTTGACCCGGGTGCCGATTTCCATGAGTACA
AGATACTCTGGAACCCCTACCAGCTCGTGTAAGCCCATCCATCATCCATAATCA--TTC-------TCCAATCTGCTCTA
GCGGATCAATGTATATA-------CAATATCACGTGCACCTTGACT----GCAGTATGTTTGTCGACGACACGCCCATAC
GGGTGCTGAAGAACCTCACGCCCGG------------CCAGTTCCTGGTGAGGCCGATGAAGATCCGGGGGAGCCTCTGG
GACGGCTCTGATTGGGCGACGGACAATGGCAAATACAGGGTCGACTATAACCGTGCGCCGTTCACCGCCGTGTTACAGGG
TTTCGACGTCTACGGCTGCCCTGCCACCGGAGGCGCGCCGTGTGGCTCACTGAGCCTGTCGTGGAACGCGATTCGGAGCC
TGACGCCCGCGCAGGAGGCGGCGTACAAGAACGCCAAGAGCAAGTACATGACGTACGACTACTGTACCGATAAGTCTAGG
CCCAACTTTCATCTACCAGGGGAGTGCAACAATAACTAATTACCTTT----CTGGTTTAGGATTATTAGATAAACAAGGA
AGCTATCAACTCTCTGTTATTATGAAAAGAAGGTCTGAATTCATAAGAAAG-AAGATATTTTCTTTTTGTGGGAAAAAGG
AAAATAT----------------------------------------TTGGTAGTGATCCCAATCTAAATGTAAACT-AT
AATAATAATCTTTAT---------------------------CAGCTTATTTGTTCGTTCTCCCACGTACGACCGGCTTT
CCATGCGTACGCTGTGCCCGTCAAAATTTTATTTTCATCACTTCTTCGTTCGTCCTCCCCAGGTATGACCCTTCCACCGA
CTTTCCAGGTGT--------------------------------------------------------------------
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-------------------------------------------------------------------------------A
TTGATTTGCCGCATCCTTCCACTAGTAGTCTATTTAAACCAGTTCTTACG-TGGACTGCCAAATCAGACCAATCTTATGT
ACATTTGGTA--ATACAATAATAGATTTATGGAAGGAAATGATCACAGCCGGAAATCAACCTCTAATCATCATCAGATCA
ATCTTACGTATATTTGGTAACACAATT--ACAAATTTATGGGAAAGAATCGATCACGGTCACAAATTAATCTCTAATCAT
CAGGTTGTATGTATAT-TATATGGTAATAACACAATAAATTTATGAGAAGGAATCAATCAATCTCTAATAACACAATAAT
TTATGGGAAGGGATCAGATCAATTTCTAATCATTCTTTAAGATAATATTCACATGAATTGTTCATCACAATAAAATAATA
TGTCTTCTTCAGCTTTCCTGCAGAGCTATTCTTAGTGTTCGTTGTTGGAAATATGAGCAATTTACCAAATGATTTTATTA
ATAGAAATATTAGATAAAGCATGACTAATATAACATGGATAAAAGTAGTCATGCGATCTGACAGAGAAAAGGTCAATAAC
ATCAGCATATATGAACTGCAACCAAACATGTCTAAAGCAGATAGTAGAACAGGTTGCATATATGGCGTAGAACCTAACAT
ATGTAGGACACACACTAGAGCAAAGAACTGCGAGAGGACCTCTAACAGAAAGAGCAAGAACACGT
>chr3A_498
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-----------------CATTTTATAATTCAATTCCAACTTCATACAAGCGCAA------GGGATGGTCCAAATATTAAA
C-TATAGGCAACAATTCATAATAAATCAACGATAACAATATGCCAAATATAGCAAAGAAATCTTATTGTGAATTTACAAG
TGCATGGCAAAATAACTGTGAAACTATTAAACAATACATATCATTAATTTATTGTGTGCCAAAAATGCAATGTTTGAGGA
TATGCTAATTTTAGCAAAAAAGGATTATATAAGATACGTCTA-TACTTTCTAGTGCGTGGCAATTAACCGTTTTAAATGC
CCAGTAATTTTCATTTTCGCCAACTATTTATTTACTGCCATTTTTAGTCGATCAAT--TTTCAAAATAGCGTACAAACAT
GCATGCATGCATGCCGTGAATGTGTGGCACATCTATACCCTTATATAAGGGTCATGGCGTGAGTGAAGCATTGTGGGAAC
GAGCTGAG-AACCTGGTTAAGCAGGAAGCACGC--GTAGGTAGATCAATCTCTTGGCCAATGCACCTAACAATGGCTTCC
AGTTTGCAGCCATGGCTTCTCCTCCTCATCCTCCCCCTCCTCTCTTTGCTGCTCAGCACAGCAGCGCCTGCGGCGGTGTT
CAACGACAACTTCGTGGCAGTAGGGGGTACAGATGCTAATCACCTAGTTAATCAGGGGACATCAGTTCGCCTCGTCTTGG
ATAGGAGCTCCGGTACGTATCACCTTTTTCTCCTACACATCGACGATCAGGAGAAAAAGCTAATCATGTGGTTTTATACA
AGTAGACTAAATTAAGTTGGCCC---------------------------------------------------------
--TAATTGTGATGCACGGAAAAGCTGACGTAGTTTGATTGAATTTGACCCAAAATTTGTTTGTTTGCGTTGGATGCAGGG
GCTGGATTTAGTTCCAAGCTGGCGTATGGTTCAGGGTTGATCCAAATGAGGATCAAGATACCCGCCGGGTACACTGCCGG
GGTTGTAACGGCCTTCTATGTTAGTGTTGCCA--------------------CATTTTGT--------------------
A-----TAGTCATTTCATTCCGTT---TGATGAAAA---CTAGAACTGAG------------------------------
-------------------------------------ATGTACTTTATGTAT--TCTTG------TAGCTCACGTCGGAG
CCCGAGTACGGTGACCACGACGAGGTGGATTTCGAGTTCTTGGGCAACGTGGAGGGCAAGCCGGTCGCTCTGCAGACCAA
CATCTTCCTGAACGGCAAAGGCGAGAGGGAGCAGAAGTTCGACCTTTGGTTCGACCCGAGTGCCGATTTCCATGACTACA
AGATACTCTGGAACCCCTACCAGCTCGTGTAAGCCCATCCATCATCCATAATC--CTTC-------TCCAATCTGCTCTA
ACGGATCAATGTATATATATG----TATATCACGTGCACCTTGATCGACCACAGGATGTTCGTCGACAACACCCCCATAC
GGGTGCTGAAGAACCTCACGCCAGG------------CCAGTTCCTGGTGAGGCCGATGAAGATCCGCGGGAGCCTCTGG
GACGGCTCCGACTGGGCGACGGACAATGGCAAATACAGGGTCGACTATAACCGTGCGCCGTTCACCGCCGTGTTACAGGG
TTTCGACGTCTATGGCTGCCCCGCCACCGGAGGCGCGCCGTGTGACTCGCTGAGCCTGTCGTGGAACGCGATCCGGAGCC
TGACGCCCGCGCAGGAGGCGGCGTACAAGAACGCCAAGAGCAAGTCCATGACCTACGACTATTGTACCGATAAGTCTAGG
CCCAACTTCCATCTACCGGGGGAGTGCAACAATAACTAATTACTTTT----CTGGCTTAGGGTTATTACATAAACAAGGA
AGCTATCAACTCTCTGTTATTACGATAAGAAGGTCTGAATTCATAAGAAAG-A-GAAAATTTCTTTTTGTGGGAAAGAGG
AAAACAT----------------------------------------TTAGTAGTGATCCCAATCTAAATGTGAACT-AT
AATAATAATCTTTATATACTACTTACAAAGAACGTAAGGTTTCATCTTATTTGTTTGTTCTCCCACGTACGACCAGCTTA
CCATGCGTATGCTATGCACACACACA------------------------------------------------------
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------------------------------------------------------------------------------GA
TTGATTTGCGCCATCCTTCCAGTAGTATATTTAAA----CCAGTTCTTATATGGACTGCCAAATCAGACCAATCTTATGT
ATATTTGGTA--ATACAATAATAGATTTATGGAAGGAAATGATCACAGCCGGAAATCAACCTCTAATCATCATCAAATCA
ATCTTACGTATATTTGGTAACACAATT--ACAAATTTATGGGAAAGAATCGATCACGGTCACAAATTAATCTCTAATCAT
CAGGTTAATCTTATGTATATATGGTAACACAATAATAAATTTATGAGAAGGAATCAATCAATCTCTAATAACACAATAAT
TTATGGGAAGAGATCAGATCAATTTCTAATCAATATCTAAGATAATATTCAAATGAATTGTTCATCACAATAAGATAATA
TGTCTTGTTCGGCTTACCTGCAGAGCTATTCTTAGTGTTTGTT-------------------------------------
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>chr3B_501
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--------------------TTTATAATTCAATTCCAACTTCATACAAGAGCAATTAAGAGGGATGGTCCAGATATTAAA
ATTATAGGCAGCAATTCATAATAAATCAATGATAA---TATGCCAAATATAACAAAGAAATCTTATTGGGAATTTACAAG
TGCAT-GCAAAATAATTGTGAAACTATCAAAAAATGCATATCATTAATTTATTGCGTGCCAAAAATGCAATGTTCGAGAA
TATGCTAATTTTAGCAAAAAAGGATCCTATAAGATACGTCTATTACTTTCTAGTGTGTGGCAATTAACCGTTTTAAATGC
CCGGTAATTTGCATTTTTGCCGAGTATTTATTTACTACCATTTTTAGTCGATTAATAATTTCAAAATAGCGTACAAATAT
GCATCCATGG----CGTGACG----GTGGCACATCTACCCTTATATAAGGGTCATGGCGTGAGTGAAGCATTGTGAGAAG
GAGCTCAG-AACCTGGTTAAGCAGGAAGCACGCACGTAGGTAGATCGATCTGTTGTCCAGTGCAGCTAACAATGGCTTCC
AGTTTGCAGCCATGGCTTCTTCTCCTCATCCTCCCCCTCCTCTCTTTGGTGCTTAGCCCGGCAGCGCCTGCGGCGGTGTT
CAACGACAACTTCGTGGCGGTAGGGGGTACAGATGCTAATCACCTAGTTAATCAGGGGACATCAGTTCGCCTCGTCTTGG
ATAGGAGCTCCGGTAAGTATCATCTTTTTCTCCTACGCATTGACAATCAGGAGATTATGCTAATCATGTTGTTTTA----
AGTAGACTAAATTAAGTGGCCCAAAAATAAATTGCGATGTACGGAAAAGTTCATGCAGTTCGATTGAATTTGACCCAAAA
TTAAATTGCGATGTATGGAAAAGTTGATGCAATTTGATTGAATTTGACCCAAAATTTGTTTGTTTGCGTTGGATGCAGGG
GCTGGATTTAGTTCCAAGGTGGCGTACGGTTCAGGGTGGATCCAAATGAGGATCAAGATACCCGCCGGGTACACTGCAGG
GGTTGTAACGGCCTTCTATGTGAGTGTTGCGA--------------------CATTTTGT--------------------
A-----TAGCCATTTCATTCCGTT---TGATGAAAA---CTAGAACTGAG------------------------------
-------------------------------------ATGTACTATACGTA---TCTTG------TAGCTCACGTCGGAG
CCCGAGTACGGTGACCACGACGAGGTGGATTTCGAGTTCTTGGGCAACGTGGAGGGAAAGCCGGTCGCTCTCCAGACCAA
CATCTTTCTGAACGGCAAAGGCGAGAGGGAGCAGAAGTTCGACCTTTGGTTCGACCCGGGTGCCGATTTCCATGACTACA
AGATACTCTGGAACCCCTACCAGCTCGTGTAACTCCATCAATCATCCCCTAGCTACTCC-------TCAAATCTGCTCTT
GCGGATCAATGCATATATCTGTATATATATCATGTGCACCTTGATTGATCGCAGGATGTTCGTCGACGACACGCCCATAC
GGGTGCTCAAGAACCTCATGCCCGG------------CCAGTTCCTGGTGAGGCCGATGAAGATCCGGGGGAGCCTCTGG
GACGGCTCCGACTGGGCGACGGACAATGGCAAATACAGGGTCGACTATAACCGTGCGCCGTTCACCGCCGTGTTACAGGG
TTTTGACGTCTATGGCTGCCCCGCCACCGGAGGCGCGCCCTGTGGCTCACTGAGCCTGTCGTGAAACGCGATCCGGAGCC
TGACCCCCGCGCAGGAGGCGGCGTACAAGAACGCCAAGAGCAAGTACATGACCTACGACTATTGTACCGATAAGTCTAGG
CCCAACTTCCATCTACCGGGGGAGTGCAACAATAACTAATTACTTTT----CTGGCTTAGGATTATTAGATAAACAAGGA
AGGTATCAACTCTCTGTTATTACGAAAAGAAGGTCTGAATTCATAAGAAAGAA-GAAATTTTCTTTTTGTGGGAAAGAGG
AAAACATAAGAAAGAAGAAAAAAAAATTGCGGGAAAGAGGAAAACATTTGGTAGTGATCCCAATCTAAATGTAAACTTAT
AGTAATAAATTTTATATAA-------------------GTTTCAGCTTATTTGTTCGTTCTCCCACGTACGACCGGCTTT
CCAGGCGTACGCTGTGCCCGTCAAAATTTTATTTCCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
TTAATTTGCCGCATCCTTCCACTAGTATATTTAAA----CAGTTCTTACG-TACACTGCCAAATCAGACCAATCTTATGT
ATATTTGGTATAATACAATAATAGATTTATGGAAGGAAATAAT--CAGCCGGAAATCAACCTCTAATCATCATCAGG-CA
ATCTTGCTTATAATTGGTAACACTATATAACAAATTTATGG-AAAGAATTGACCACGGTCGCAAATTAATCTCTAATCAT
CATGTTAATCTTATGTGA-----GTAACACAATAATA----------------------------------------AAT
ATATGGAAAGGGATCAGATCAATCTCTAAT--------------------------------------------------
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>chr3B_1308
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------------------------------AATTTGATTGAAATTGACCCAAAATTTGTTTCTTTGC----GATGCAGGG
GCTGGATTTAGTTCCAAGGAGGCATATGGTTCAGGGTTCTTCCACATGAGGATCAAGACACCGCCCGGGTACAGTGCCGG
AGTCGTAACGGCCTTCTATGTGAGTATTCCAACATGTGGTTTCTACATGTTGCATATGTT--------------------
ATGTGCTAGCCATTTCCTTTAGTT---TAATGATGAATACTAGAAGTCAGATAT--------------------------
-------------------------------------AAATTTATTCGTGCAC-----GTACGTCTAGCTCACGACGGAA
CCCGAGCAAGGTGACCACGACGAGGTGGATTTGGAGTTCCTGGGCAACGTGGACGGCAAGCCGGTCATTCTCCAGACCAA
CATCTTCCTAAACGGCAAAGGCGACAGGGAGCAGAGGTACGAGCTTTGGTTCGACGCGGGAGCCGATTTCCATGACTACA
AGATACTCTGGAACCCCTACCAGCTCGTGTAAGTCCGTCAATCATCCCCTAGCTAGTCCCTAACTTTGCCATGTGCTG-G
GTGGATCA------ATG-------ATATATCACGTGTACCCCAATTGATCGCAGGGTGTTCGTCGATGACACGCCGATAC
GGGTGCTGAAGAACCTCGCGCCCAG------------CCAGTTCCCGGTGAGGCCGTTCAAGATCCGGGCGAGCATCTGG
GACGGCTCCGACTGGGCGACGGACAATGGCAAATACAGGGTCGACTATAACCGTGCGCCGTTCATCACCGTGTTGCAGGA
TTTCGACGTCGATGGCTGCCCCGCCACCGGAGGCGCGCCGTGTGGCTCGCCGAGCCTGTCGTGGAACACGATCCAGAGCC
TGACGCCCGCGCAGTGGGAGGCGTACAAGGACGCCAAGAGCAAGCACATGACCTATGACTACTGTACCAATAAGGACAGG
GCGTGCGCCCAGCTGCCGGGAGAGTGCAACAACAACTAATTAGCATTTGTTCTGGTTTCAGATTA---------------
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>chr3D_1339
CTTTGGGCT-----------------------------------------------------------------------
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-----------------------------------------------------------------------GATGCAGGG
GCCGGATTTAGCTCCAAGATGATGTATGGCTCAGGGTTGTTCCACATGAGGATCAAGATACCCGCCGGGTATACTGCCGG
AGTTGTAACGGCCTTCTATGTGAGTGTTGACA--------------------CATCTTGT--------------------
AAGTTCCAGCCATTTCCTTTGATT---TCGTGAAAA---GCAGAAGTCAA------------------------------
-------------------------------------ATATGCATTCTTGTAC-----GTAC-TCTAGCTCACGACACAA
CCCGAGTATGGTGACCACGACGAGGTGGATTTTGAGTTCTTGGGCAACGTCGAGGGCAAGCCAGTGGCTCTCCAGACCAA
CATCTTCCTAAACGGCCAGGGCTACAGGGAGCAGAAGTTCTACCTCTGGTTCGACCCATCAGCAGCTGTCCATGACTACA
AGATACTCTGGAACCAGCACCAGCTCGTGTAAGTACATCATC---------ATCC--------CTTTCCCATC-GCTT-A
GAAGATCTATGCACATA-------ATATATCACGTGCACCTTGATA----GCAGGATGCTCGTCGACGAAATGCCCATAC
GGATGCTGAAGAACCTACCGGACCGCACGCCGGGCTACCGGTTCCCATCCAGGCCGATGAAAATCCGGGCGAGCATATGG
GACGGGTCTTCCTGGGCGACAGACAACGGCAAGATCAGGGTCGACTGGAACCGTGCGCCGTTTACCTCCGCATTCCAGAG
GTTCAATGTGGACGCATGCCCGGCCACCGGAGGTGCACAGTGCAGCTCACCAAACCTGTGGTGGAACAAGTTCCGCGACT
TAACGCCCGTGCAGAAGGAAGCGTACAAAAACATCAAGAGCAAGTACATGACCTACAACTACTGTGACGACAAGGGAAGG
TCCAACCTCCATCTGCCGGGAGAGTGCATCTACAACTAACTAGCTTT----CT---------------------------
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>chr3D_1346
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---------------------------------------------------------------TTGC----GATGCAGGG
GCTGGATTTAGTTCCAAGGAGGCGTATGGTTCAGGGTTCTTCCATATGAGGATCAAGACACCGCCCGGGTACAGTGCCGG
AGTCGTAACGGCCTTCTATCTGAGTGTTGCAA--------------------CATGTGGTTTCTACATGTTGCATATATT
ATATGCTAGTCATTTCCTTTAGTT---TGATGACGAATACTAGAAGTCAGATATTGTCGGTCGTGATTGTAATTCTTGGG
CGATTGAGTAATACAAGTATTATCCCGCAAAAAAAATATATAAAT---GTA---TCTTGTACGTCTAGCTCACAATGGAA
CCCGAGCAAGGTGACCACAATGAGGTGGATTTGGAGTTCCTGGGCAACGTGGACGGCAAGCCGGTCATTCTCCAGACCAA
CATCTTCCTAAACGGCAAAGGTGACAGTGAGCAGAGGTACGAGCTGTGGTTCGACGCTGGAGCCGATTTCCATGACTACA
AGATACTCTGGAACCCCTACCAGCTCGTGTAAGTCCATCAATCATGCCCTAGTTAGTCCCTAACTTTGCCATGTGCTG-A
GTGGATCA------ATG-------ATATATCACGTGTACCCCAATTGACCGCAGGGTGTTCGTCGACGACACGCCGATAC
GGGTGCTCAAGAACCTCGCGCCCAG------------CCAGTTCCCGGTGAGGCCGTTCAAGATCCGGGCGAGCATCTGG
GACGGCTCCGATTGGGCGACGGGCAATGTCAAATACAGGGTCGACTATAACCGTGCGCCGTTCACCACTGTGTTTCAGGA
CTTCGACGTCAATGGCTGCCCCGCCACCGGTGGCGCGTCGTGTGGCTCGCCGAGCCTGTCGTGGAACGCAATCCAGAGCC
TGACGCCCGCGCAGTGGGAGGCGTACAAGGACGCCAAGAGCAAGCACATGACCTACGACTACTGTACCAATAAGGACAGG
GCGTACGCCCAGCTGCCGGGAGAGTGCAACAACAACTAATTAGCCTTTGTTCTGGTTTCAGATTA---------------
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>chr3A_1349
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-----------------------------------------------------------------------GATGCAGGG
GCGGGATTTAGCTCCAAAATGATGTATGGCTCAGGGTTGTTCCACATGAGGATCAAGATACCCGCCGGGTATACTGCCGG
AGTTGTAACGGCCTTCTATGTGAGTGTTGACA--------------------CATCTTGT--------------------
ATGCTCCAGCCATTTCCTTTGACT---TGATGAAAA---GCAGAAGTCAG------------------------------
-------------------------------------ATATACATTCTTGTATGCAC---ACATCTAGCTCACGACGCAG
CCCGAGTACGGTGACCATGACGAGGTGGATTTCGAGTTCTTGGGCAACGTCGATGGCAAGCCAGTGGCTCTCCAGACCAA
CATCTTCCTAAACGGCCAGGGCTACAGGGAGCAGAAGTTCTACCTCTGGTTCGATCCATCAGCAGCTGTCCATGACTACA
AGATACTCTGGAACCAACACCAGCTCGTGTAAGTACATCATCTATCCCCTGACCC--------CTTTCCCATCTGCTC-A
GAAGATAAATGCACATA-------ATATATCAGGTGCACATCAATC----ACAAGATGCTCGTCGACGAAACGCCCATAC
GGGTGCTGAAGAACCTACCGGGGCGCACGCCGGGCTACCAGTTCCCATCGAGGCCGATGAAAATCCGGGCGAGCATTTGG
GACGGCTCTTCCTGGGCGACAGACAACGGCAATATCAGGGTTGACTGGAACCGTGCGCCGTTTACCTCCGCATTCCAGAG
GTTCAATGTAGACGCATGCCCGGCCACTAGAGGTGCACCGTGTGGCTCACCGAACCTATGGTGGAACAAGTTCCACGACC
TAACGCCCGTGCAGAAGGAAGCGTACAAAAACGTCAAGAGCAAGTATATGACCTACAACTACTGTGACGACAAGGGAAGG
TCCAACCTCCATCTGCCAGGAGAGTGCATCTACAACTAACTAGCTTT----CT---------------------------
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>chr3B_1349
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-----------------------------------------------------------------------GATGCAGGG
GCGGGATTTAGCTCCAAGATGATGTATGGCTCAGGGTTGTTCCACATGAGGATCAAGATACCCGCCGGGTATACTGCCGG
CGTTGTAACGGCCTTCTATGTGAGTGTTGACA--------------------CATCTTGT--------------------
ATGTTCCAACCATTTCGTTTGATT---TGATGAAAA---GCAGAAGTCAG------------------------------
-------------------------------------ATATACATTCTTGTAC-----GTACATCTAGCTCACGACGCAA
CCCGAGTACGGTGACCACGACGAGGTGGATTTTGAGTTCTTGGGCAACGTCGATGGCAAGCCAGTGGCTCTCCAGACCAA
CATCTTCCTAAACGGCCAGGGCTACAGGGAGCAGAAGTTCTACCTCTGGTTCGATCCATCAGCAGCTGTCCATGACTACA
AGATACTCTGGAACCAGCACCAGCTCGTGTGAGTACATCATCTATCCCCTGATCC--------CTTTCCCATCTGCTC-A
GAAGATCAATGGACATA-------ATATATCACGTGCACCTCGATC----ACAGGATGCTCGTCGACGAAATGCCCATAC
GGGTGCTGAAGAACCTACCAGGCCGCAAGCCGGGCTACCAGTTCCCATCGAGGCCGATGAAAATCCGGGCGAGCATCTGG
GATGGCTCTTCCTGGGCGACAGACAACGGCAAGATCAGGGTCGACTGGAACCGTGCGCCGTTTACCTCTGCATTCCAGAG
GTTCAATGTGGACGCCTGCCCGGCCACCGGAGGTGCACCATGTGGCTCACCGAACCTGTGGTGGAACAAGTTCAGTGACC
TAACGCCCGTGCAGAAGGAAGCGTACAAAAACGTCAAGAGCAAGTACATGACCTACAACTATTGTGACGACAAGGGAAGG
TCCAACCTCCATCTACCGGGAGAGTGTATTTACAACTAACTAGCTTT----CT---------------------------
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>chr3A_1350
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------------------------------------------------------------------------ATGCAGGG
GCTGGATTTAGTTCCAAGGAGGCGTATGGTTCAGGGTTCTTCCACATGAGGATCAAGACACCGCCCGGGTACAGTGCCGG
AGTCGTCACGGCCTTCTATGTGAGTGTTGCAA--------------------CATGTGGTTCCTACATGTTGCATATGTT
ATATGCTAGCCACTTCCTTTAGTTAGATGATGAATA---CTAGAAGTCAG------------------------------
-------------------------------------ATATAAAT---GTA---TCTTGTACGTCTAGCTCACGACGGAA
CCCGAGCAAGGTGACCACGATGAGGTGGATTTGGAGTTCCTGGGCAACGTGGACGGCAAGCCGATCATTCTCCAGACCAA
CATCTTCCTAAACGGCAAAGGCGACAGGGAGCAGAGGACCGAGCTTTGGTTCGACCCGGGAGCCGATTTCCATGACTACA
AGATACTCTGGAACACCTACCAGCTCGTGTAAGCCCATCAATCATCCCCTAGCTAGTCCCTAACTTTGCCATGTGCTG-A
GTGGATCA------ATG-------ATATATCACGTGTACCCCAATTGATCATAGGGTGTTCGTCGATGACACACCGATAC
GGGTGCTGAAGAACCTCGCGCCTAG------------CCAGTTCCCGGTGAGGCCGTTCAAGATCCGGGCGAGCATCTGG
GACGGCTCCGACTGGGCGACGGACAATGGCAAATACAGGGTCGACTATAACCGTGCGCCGTTCACCACTGTGTTTCAGGA
TTTCGACGTCGATGGCTGCCCCGCCACCGGAGGCGTGCAGTGTGGCTCGCCGGGTCTGTCGTGGAACGCGATCCAGAGCC
TGACGCCCGCGCAGTGGGAGGCCTACAAGGACGCCAAGAGCAAGCACATGACCTACGACTACTGTACCAACAAGGACAAG
GCGTACGCCCAGCTGCCGGGAGAGTGCA---ACAACTAATTAGCCTTT--------------------------------
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>chr3B_1351
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-------------------------------------------------------------------------TGCAGGA
GCTGGATTTAGATCAAAGATGATGTATGGTTCAGGGTTATTCCACATGAGGATCAAGTTACCTGCCAAGTATACTACCGG
AGTTGTAACGGCCTTCTATGTATGTGCTGACA--------------------CATCTTAT--------------------
ATGCT-CAGCCATTTCCTTTGATT---TGATGAAAA---GCATAAGTCAG------------------------------
-------------------------------------ATATATAT---ATACATTCTTGTACAGCTAGCTCATGACAAAA
CCCGAGTATGGTGACCACGACGAGGTGGATTTCGAGTTCTTGGGCAACGTCGATGGCAAGCCAGCGGCTCTCCAGACCAA
CATCTTCCTCAACGGCCAGGGCTATAGAGAGCAGAAGTTCTACCTCTGTTTCGACCCAGTAGCAGCTATCCATGACTACA
AGATACTCTTGAACCAACACCAGCTAGTGTAAGTCATCGA-------CCGGGTCC--------CTATTCTTTTTGTTCTT
AC---------------TCAGCATATATATCACGTGCACCTCGATC----GTAGGATGCTTGTCGATGAAAAACCCATTC
GGGTGCTCAAGGACCTAGCGGGCTGCATGCCGGCCTACCAGTTCCCGACG-GGACGATGAGAATCCGGGCAAGCATCTAG
GATGGCTCTCCCTGGGCGACCGACAATGGCAAGATCAAAGTCGACTGGAACTGTGCGCCATTTACCTCTGCGTTCCAGAG
GTTCAATGTCGACGCCTGCCCCGCCACCGGAGGTGCGCCGTGTGGCTCACCCAACCTATGGTGGAACAAGTTTTGGGACC
TATCACCCGCGCAGAAGGCATCGTAAAAGAACGTCAAGCGCAAGTACATGACCTACAACTACTATGAAAATAAGGAAAGG
ATCAACTACCATCTGCCGGTAGAGTGCAGCTACAACTAATTA--------------------------------------
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>chr3D_1537
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-----------------------------------------------------------------TAGCTCACGACAGAA
CCCGAGTACGGCGACCATGACGAGGTGGATTTCGAGTTCTTGGGCAACGTCGATGGCAAGCCAGTGGCTCTCCAGACCAA
CATCTTCCTCAATGGCCAGGGATACAGAGAGCAGAAGTTCTACCTCTGGTTCGACCCAGCAGCAGCTGTCCATGACTACA
AGATACTCTGGAACCAGCACCAGTTAGTGTAAGTCATCGA-------TCGGGTCC--------CTATTCCTTCTGTTACT
AC---------------TCAGCATATATATCACGTGCAACACGATC----GTAGGATGCTTGTCGACGAAACACCCATCC
GGGTGCTCAAGAACCTAGCTGGACGCGCGCCGGGCTACCAGTTCCCGACGAGGCCGATGAGAATCCGGGCGAGCATCTGG
GACGGCTCTTCTTGGGCGACCGACAACGGCAAAATCAAAGTCGACTGGAACCGTGCGCCATTTACCTCCGCGTTCCAGAG
GTTCAATGTCGATGCCTGCCCCGCCACCGGAAGTGCGCCGTGTGGCTCACCCAACCTATGGTGGAACAAGTTTCAGGACC
TAACGCCCGCACAGAAGGCAGCGTACAAAAACGTCAAGAGCAAGTACATGACCTACAACTACTGTGATGATAAGGCAAGG
TTCAACTACCATCTGCCGCTAGAGTGCAGTTACAACTAACTAGTAGCTTTCTG---------------------------
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-----------------------------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
-----------------------------------S--------------------S-----------------------
---S---------------S-------------S---------S------------------------------------
-------S-------------S-----------------------------------------------S----------
-------------------------------------------S---S-------------------------S------
-------------------S---SS----------------------------------------S--------------
--------S----------------------SS------S------SS--------------------------------
---------------S-----------S------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------S--------------------S------------------------------------
----S--------------SS-----------------------------------------------------------
----------------S--------------------S--S------S------S----S--------------------
-----------------------------------------------------------------S-----------S--
-----------------------------S-----------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-----------------------S----
-----------------------------------------------------S--------------------------
------------------------SS------------------S---------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------S---------------------------
--------S-----------------------------------------------------------------------
----------------------S------------------------------S--S-------------------S---
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------SSS-SSSSSSSS-----------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------SSSSS---S------------S-SS-S-----------------------------------------------
--------------------------------S-S-S--------------S---------------------S------
------S---S----S-----------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_236
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--------------------------------------------------------GGAAGGGAGGGTGGACAAAG----
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>reverse_2409
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--------TCATCTACCAGGGGAGTGCA----------------------------------------------------
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-----------------------------------------------------------------
>forward_1068
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--------GCCATGGTTTCTCCTCCTCC----------------------------------------------------
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>reverse_2781
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------------------------------------------------------------AGGTATGACCCTTCCACCGA
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-----------------------------------------------------------------
