>input_sequence_57715
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------ATGTTGGCATTCATCCATAGAGATGGTCTCGACAAGGATCAGTTTGGGGATCTAGAATCCTTGGGTTATCCCAA
GCCTTTAAATGGTGAGTGGCCTGTAAATATTGCGACAGGTTATGGGTTGCGCTCTTATACGATTCTTCTGTACAACTAAC
AAAACTGTTGACCTTGTATCTTCAACCAGATGGCATGATCTTGGTTAACACTTTTGAAGAGCCTTTCGGCGATGAATGTG
GTGAAGGTGTTTGGAGTGAACTAAGTGAAACAACTTGTGACATATTAAAGAGAAATATTGTAGCACTTGCTTCATTCTGT
GGTGATTCTACAGTACTGTGATGTTTACTGCTGTTTCATATTTGTATTGGATCATAACTGATGATGAAAACTATGACATG
CAGGAGGCAAGAGATTTTTTGCATGCACGGGTCTTTTTATTGAATGGAAGGGGTTTACAACAATCTTGACTTCAGCGAGC
TTGCTTAGAGAATCTGGTTGTAAAGATCAGAAGATTGTTAAAAACTTGAGGGTTGGTGCTTCTTACTATTCAGCAACCCC
TGTTATTTTTTGCGCGGCGTTTAAGCGACAACTGTGCCATTTGCAGATTGAAGTGTTGCTTCCAAACAAAGGTCGCGTGG
AAGGGAAATTACAACATGTTAGTTTACATTACAATGTCGCTCTGGTCAGCGTCAAGGATTTTTGTGCTAGCCAACCAGCA
GTGAAAGTTGAACATCGGTGGCCTGATTCTGGTAAAGTACTAGCTGCCGGGTGCTGCTTCAGTTCCGGCAGACCGATGGC
TGCAAGAGGGCAAAAGTATGGCAGGCCGAATGTCCAATTTGATTGCAAATATCTTGGATACTCTACTTGCAAAATCACCA
AGGTATGGCTGTTATTTTTCTTACCTACTTCTACGCGGTTGAACTAAATAGTTCCATCAGATATACGAGTTAAGCTACCA
TATATGTTTGGCGTTAGCAATGACGGACAAAATTTTCTCCATGTCTCCTGGTTAGGCTGGGATTGGAGGTCCCCTTGTTG
ATCTTGATGGGAAATTTGTCGGCATGAACTTCTACGACAAGTACGTAGGTCACACACCGTACCTGTCATGGCGGGAGATT
GTCCCTCTCCTGGAATATTTTGAGACAAAAGGGTATGGTCTAGATTTCATTTTGGGTATTCAAGTGCCTGTCGTGTGTTG
TATTTAG-------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G204000
ACCCCACAGAAGACCACGCATATGAATGCGCATGAAGCCCACAAACTCAGCATAGTTGGTGCCATCAAAGATCACCGAAC
GCCTAGGAACAGCGACATAGCCCGAAGAAGACATAACAAGGTCTTCTTTTGCTTTCTCTGTTCAGTCTCCTCCTTTTTTT
TCTTTTTTTTGGAGTCAACCCAGGAGGAGCACCCGATCTGGATTGTGGATCGGGCAGAGGGGCGCTCAGGACAGGCAGGG
GACCTGCTCGATCTCAAGCAACAGAGGGGCGCTCGAGGCAGGAGGCAGGGAACACGCTCGATCTGAAGGGGACTCGCTCG
ATCTGAAGCTGGATCGAGCAGAGGCACGCTGCCTGACTCGGGTAGGGGCGCCTCACGAGCCGGCGCGGGAGCAGCTAGCC
AGCCGGACTAGCCAGGGGCAGCGGCGGCTCCCAGAACCGGGCGGGATGAGGGAGGAGGTGGCGCCCAAAGCAGCCAGAAC
CAGCCAGCTAGCCGAAAGGGACAGGGCGGCGGCAGCCAGACAAGTCGGAGGTGGCCGGCGGCAGCCAGACAAGTCGGAGG
TGGCTGGCGAACGGACAGAGAGCAGGGCAGCAGGGTCTGGTCGGGGCCAGGAAGAAGAAGGCCGGGGACAAGCGGAGACA
ACCGGAGGCGGGCTGAGGCAGCCAGAACGGCCGGAGACGAGACAGGCTAGGAGCGAGGAGCACGGAGTTGCGTCGTGCGG
GAGAGCGAGGCTAGCCTAGCATCTGATACCATGTTGGATAAGTGAGCAACTGATCTTTACTGAGGGCCAAAGACCATTAC
ATATACATGTGTGGTAAAGTGTAGGAAACCCCTTATATAATGAGGATATACCGAAAAGAGACTATACACATCTAACACTT
GAATCCATACTTCTTTAGGTCCTCTTGTCTCTATATTGCTCTTTTCCTACAATACATTCATGTAGATGTTACATAC----
--------------------------------------------------------------------------------
-----------------------------------------TAATTAAGCGCTGGTTCGATCCATTGTACTTTTGG-TTA
GTACTCATGTTGGCATTCATCCATAGAGATGGTCTCGACAAGGATCAGTTTGGGGATCTAGAATCCTTGGGTTATCCCAA
GCCTTTAAATGGTGAGTGGCCTGTAAATATTGCGACAGGTTATGGGTTGCGCTCTTATACGATTCTTCTGTACAACTAAC
AAAACTGTTGACCTTGTATCTTCAACCAGATGGCATGATCTTGGTTAACACTTTTGAAGAGCCTTTCGGCGATGAATGTG
GTGAAGGTGTTTGGAGTGAACTAAGTGAAACAACTTGTGACATATTAAAGAGAAATATTGTAGCACTTGCTTCATTCTGT
GGTGATTCTACAGTACTGTGATGTTTACTGCTGTTTCATATTTGTATTGGATCATAACTGATGATGAAAACTATGACATG
CAGGAGGCAAGAGATTTTTTGCATGCACGGGTCTTTTTATTGAATGGAAGGGGTTTACAACAATCTTGACTTCAGCGAGC
TTGCTTAGAGAATCTGGTTGTAAAGATCAGAAGATTGTTAAAAACTTGAGGGTTGGTGCTTCTTACTATTCAGCAACCCC
TGTTATTTTTTGCGCGGCGTTTAAGCGACAACTGTGCCATTTGCAGATTGAAGTGTTGCTTCCAAACAAAGGTCGCGTGG
AAGGGAAATTACAACATGTTAGTTTACATTACAATGTCGCTCTGGTCAGCGTCAAGGATTTTTGTGCTAGCCAACCAGCA
GTGAAAGTTGAACATCGGTGGCCTGATTCTGGTAAAGTACTAGCTGCCGGGTGCTGCTTCAGTTCCGGCAGACCGATGGC
TGCAAGAGGGCAAAAGTATGGCAGGCCGAATGTCCAATTTGATTGCAAATATCTTGGATACTCTACTTGCAAAATCACCA
AGGTATGGCTGTTATTTTTCTTACCTACTTCTACGCGGTTGAACTAAATAGTTCCATCAGATATACGAGTTAAGCTACCA
TATATGTTTGGCGTTAGCAATGACGGACAAAATTTTCTCCATGTCTCCTGGTTAGGCTGGGATTGGAGGTCCCCTTGTTG
ATCTTGATGGGAAATTTGTCGGCATGAACTTCTACGACAAGTACGTAGGTCACACACCGTACCTGTCATGGCGGGAGATT
GTCCCTCTCCTGGAATATTTTGAGACAAAAGGGTATGGTCTAGATTTCATTTTGGGTATTCAAGTGCCTGTCGTGTGTTG
TATTTAGGTTTCAGTGTACGTGTCTTA-AGTCTTATCTTAAGCATGCAGGTCCAGTCATGCGTAAACCTCGATTAGATAT
ATTATTTGTTGTCTGTCATAGGCCTGTCGCTGAAGGTGGTGATTATGGTACTCCATCCGATAGGCCTGACTGGACCAAGG
AAGGAGATAACAGTGTTTCCTGTAATAGGTATCCTGATACATCTCATTAATATCAACTCAAATATTTAGCATTAATTTGT
GGATCACATTACATTGTGGGGAAATTACTGAATCACAGCTGGTTTGTACCGAGCCCACGTTGGTATGATCCTGACGTTCT
GGAAAAGGTCGAGCGTGAAGCTTTATCAATAGTCCCCCGCTATCTACCTTATGACTGTATATCTGAATCTGATTCTGAAT
CTGAATGAAGTTGACTATCACTGTACGTGTAGAAGCCGTCCTATCTTAGTTCATGAACCTGTTTGAGTTGACCTGTAACA
TTAAAAATGGTGTACTGTGTGCTGTAATAGTACATGGATTTTGCCACTTGTTTGTTTGACTTGTTAATTTG-TCACAATA
TCCAGTGCGACTTGTTATTTTGCCACATGGATTTTATCCATTCTCTAGTCTTGTAATAGT--------------------
-------TGACTTCTTAATTTGTCACAATACCTAGTGCGACTTGGGCTGCACTGTGTGCCGTAATAGCACATGGATTTTG
CCACTTGTTTGCTTCCGCTACATTGTTTGATGGTTGTAATGCCCCGATGATGATACTGATGCTTTGTGGTTATGCAAGGC
ACAACGTAGAGTATGACACGCTCGCACTCATAGCATGATTCAGCCATTCTAATACGTACTCCCTCCGTCTCATAATATAG
GAGTGTTTTTAAGTGTTTTTACTACTTGATTTCCCCCCTTTCTTCTGTAGTCAATCAGCTGTCGGTGTGGCAACCTCAGC
AGTTGTTAGGGCAACTAGATGACTTGCGCCATTTGGCACGCAAGACAAACTTGAACCAAGAACTAAAAGAGATCCC
>chr2D_874
AAT-----------------------------------------------------------------------------
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----------------------------------------------------------------------------ACTT
GAATCCATACTTCTTTAGGTCCTCTTGTCTCTATATTGCTCTTTTCCTACAATACATTCATGTAGATGTTACATACTCCC
TCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGTATCTAATACTAGAACGTGACTTGATACATCGGTATC
TAGACAAATCTAAGACAAGAATTTTGGGACGGAGAGAGTACTAATTAAGCGCTGACTCGATCCATTGTACTTTTGGGTTA
GTACTCATGTTGACATTCATCCACAGAGATGGTCTCGACAAGAATCAGTTTGGGGATCTAGAATCCTTGGGTTATCCCAA
GCCTTTAAATGGTGAGTGGCCTGTAAATATTGCGACAAGTTATGGGTTGCGCTCTTATACGATTCTTCTGTACAACTAAC
AAAACTGTTGACCTTGTATCTTCAACCAGATGGCATGATCTTGGTTAACACTTTTGAAGAGCCTTTCGGCGATGAATGTG
GTGAAGGTGTTTGGAGTGAACTAAGTGAAACAACTTGTGACATATTAAAGAGAAATATTGTAGCACTCGCTTCATTCTGT
GGTGATTCTACAGTACTGTGATGTTTACTACTGTTTCATATTTGTATTGGATCAGAACTGATGATGAAAACTATGACATG
CAGAAGGGAAGAGGATTTTTGCATGCACGGGTCTTTTTATTGAATGGAAGGGGTTTACAGCAATCTTGACTTCAGCGAGC
TTGCTTAGAGAACCTGGTTGTGAAGATCAGAAGATTGTTAAAAACTTGAGGGTTGGTGCTTCTAATTATTCAGCGACCCC
TATTA-TTTTTGCGCGGCGTTTAAGCGACAACTGTGCGATTTGCAGATTGAAGTGTTGCTTCCAAACAAAGGTCGCGCGG
AAGGGAAATTACAACATGTTAGTTTACATTACAATGTCGCTCTGGTCAGCGTCAAGGATTTTTGTGCTAGCCAACCAGCA
GTGAAAGTTGAACATCGGTGGCCTGATTCTGGTAAAGTACTAGCTGTCGGGTGCTGCTTCAGTTCCGGCAGACTGATGGC
TGCAAGAGGGCAAAAGTATGGCAGGCCGAATGTCCAATTTGATTGCAAATATCTTGGATACTCTACTTGCAAAATCACCA
AGGTATGGCTGTTATTTTTCTTACCTACTTCTACACGGTTGAACTAAATAGTTCCATCAGATATATGAGTTAAGCTACCA
TATATGTTTGGCGTTAGCAATGACG-ACAAATTTTTCTCCATGTCTCCTTGTTAGGCTGGGATTGGAGGTCCCCTTGCTG
ATCTTGATGGGAAATTTGTGGGCATGAACTTCTATGACAAGTATGTAGGTCACACACCGTACCTGTCATGGCGGGAGATT
GTCCCTCTCCTGGAATATTTTGAGACAAAAGGGTATGGTCTAGATCTCATTTTGGGTATTCAAGTGCCTGTGGTGTGTTG
TATTTAGGTTTCAGTTTACGTGTCTTATAGTCTTATCTTACTGAAG----------CATGCATAAACCTCAATTCGATAT
ATTCTTTGTTGTCTGTCATAGGCCTGTTGCTGAAGGCGGTGATTATGGTAATCCATCCGATAAGCCTGACTGGACAAAGG
AAGGAGATAACAGTGTTTCCTGTAATAGGTATCCTGATGCATCTCATTAATATCAACTCAAATATTTAGCATTAATTTGT
GGATCACATTACATTGTGGGAAAATTACTGAACCACAGCTGGTTTGTACCGAGTCCACGTTGGTATGATCCTGACGTTCT
GGAAAAGGTCGAGCGTGAAGCTTTATCAATAGTCCCCCGCTATCTACCTTATGACTGTATATCTGAATCTGATTCTGAAT
CTGAATGAAGTTGACTATCACTGTACATGTAGAAGCCGTCCTATGTTAGTTTATGAACCTATTTGAGTTGACCTGTAACA
TTAAAAATGGTGTAATGTGTGCTGTAATAGCACATGGATTTTGCCACTTGTTTGTTTGACTTGTTAATTTCTTCACAATA
TCCAGTGCGACTTGTTATTTTGCCACATGGATTTTATCCATTCTCTAGTCCTGTAATAGTATGGTATGTGCATTGTGCTT
GACTAGTTGACTTCTTAATTTGTCACAATATCTAGTGCGACTTGGGCTGTACGGTGTGCTGTAATAGCACATGGATTTTG
CCACTTGTTTGCTTCAGCTACACTGTTTGATGGTTGTAATGCCCCGATGATGATACTGATGCTTTGTGGTTATGCAAGGC
ACAACGTAGAGTATGACACGCTCGCACTCATAGCATGATTCAACCACTCTAATACGCACTCCCTTCGTCTCATAATATAA
GAGTGTTTTT----------------------------------------------------------------------
----------------------------------------------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
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------------------------------------------------------SS------------------------
------------S----------S------------------S-------------------------------------
-------------------------------------S------------------------------------------
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-------------------------------------------------------------------S------------
-----------------------------S------------------------S-------------------------
---S---S-----SS--------------------------------------------S--------------------
------------S--------S-----------------------------------------S-S--------S-----
-S---S-------------------------------S---------------------------------------S--
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----------------------------------------------S--------------------------S------
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----------------------------------S------------------------------S--------------
-------------------------S-----S-----------------S---------------------------S--
-------------------S--------------S--------S------------------------------------
---------------------------------------------S-------------------------S--------
---------------S------------------------SSS-S-SSSSSSSSSS-----S--------S---S-----
---S-----------------------S--------S-------------S-----------S------------S----
--------------------------------------S-----------------------------------------
--------------------S-----------S--------------------S--------------------------
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--------------------------S-----------------S------S--------S-------------------
--------------S---------------S---------------------------------------S---------
--------------------------------------------------S-----------------------------
------------------------------S------------------S--S------S--------------------
---------------S------S---------------------------------------------------------
------------------------------------------S---S---------S-------S--------------S
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_328
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--------------------------------------------------------------------GGGACTCGCTCG
ATCTGAAG------------------------------------------------------------------------
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>reverse_2204
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-------------------------------------------CGTAGGTCACACACCGTACC-----------------
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>forward_334
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--------------------------------------------------------------------------CGCTCG
ATCTGAAGCTGGAT------------------------------------------------------------------
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>reverse_2361
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----------------------------------------AGCATGCAGGTCCAGTCATG--------------------
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