>input_sequence_57695
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----------------------------------------ATGGGTGAGTCGCCGGTGAAGCTCATCAGCTCGTTCGGCA
GTACGTTCAGCCACCGCGCGGAGGTGGCCCTGCGGCTGAAGCGGGTGCCGTACGAGCTCATTGTCGAAGACCTTCGCAAC
AAGAGCCAACAGCTGCTCACTCACAACCCCATCCACAAGAAGGTCCCCGTGCTCCTCCACGGCGACAGACCACCGATCTG
TGAGTCGCTCGTAATTATCGAGTACGTGGATGAGGCCTTCGCCGGGCGGCCACTCCTCCCCACCGACCCGCACGCCCGCG
CCACCGCCCGGTTCTGGGCTCACTTCATCGACGAAAAGGTATCTGCAAAGCTGTAAACGAGCTCCATAGTTGTGTTGAGA
ACTTGAGATCCATGCCAAAACTTTTTTTCTGTCAACAAAAGGAATACATTTGAACTTTGCAGGCCTAGAGCACATGAGTA
CTGCACTATGCAGAACTGTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGAAGCATCA
AAAGTATCTTAAATGAACCCTAGTGTTTTAGATATTTATGTTACAAAAAAAACATG--ACCATTTCTGCACACGTTA-TA
TTCATGTGTTGCCTGCCTGGAAAGTTTCAAGTTCAAATATTGTTTTGCTTGGAAGAAACAAAAAAATAGAAAAATTTCTA
CAGTGATAGAGCAGGAACCTTGATGTAAATTTAGAAGGCCCGGATAGAAGGCATACCTCTGCATGGTGTCTCAAAAAATG
GGTATATAATTGCGTGCAATGTTGCGGAACCCATGGGTGTTCTGAAACAATATGTTGATTAAATATGCAGTGCATGAAGT
CGTTGTGGGCGGCGCTATGGATGGAACCTAGCGAGGCACAGAGACGATCCTTGGTAGAGGCAAAGGGGAGCCTCGCGTTG
CTAGAGGAGCACCTCGGGGAGAGGAGTTTCTTCGGTGGTGACTCCATCGGGCTCGTGGACATAGCAGCTAGTGTACTGGC
ACACTGGCTTGGAGTCATGGAGAAGATCTCCGAAGTGACCGTGGTCACGGACGAGGAGTTTCCGGCACTTTGCCATTGGG
CTAGACGGTATGTTAGTGATGAGGATGTGAAGACATGCTTGCCGGAGAGGGGTGAGCTCGTTGCCATGTTCTCTGGGTGC
AAGGAGATGTTTCGATCAATGGCAATGGCGCCGCCACAGCAGTGA-----------------------------------
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>chr3D_1_TraesCS3D01G487400
AGCGCCAGCACCAAATGGACATGTGGTGTAGGAGCATCTTACTCTTGATTGAGAGGTCTTCATCGAATTAAACCATGTAC
GAGATGAGCCAAATGTTCTCTTCTGTTGTTAAAGTTAAATTCTGTACTTTCCTGAGTTTGAAATATTACAGATTTCAGTT
GGAAATTCCGCAATCCCGAAATTTCCGGCAACATTCTGCTAATCCCAGACTAAATTTATCTATTTAAAATAAATTTAGGT
GAACTGAATTTCCGTGCATCGTCCTTTGTTGTTCTCTACCACTGTACCACATATATATGCTGCAGAGAGTGAATTCCAAC
GTGGCATGTTCAACTGATTTAATTTTTATCAGAGACTGGACCGGATTTAATCACCACAGACCTAGTTTTAAACAGGGTTT
TACTTACCACTAGAGGAAATATTGGTGGAACAGAGGTAGATTGGGTTACCGCTGATACTCTTTACCGCCCAAAATTCTTT
ACAAATTTGCTACAATTTGATTAATTATATTTTTTATTGTTACAAACTATATATCGAAATGGTTTTGCAGCTATATAATT
GTTGAACATGTGGGGGTGTGGTTAGGGTGTAGCTATAACCCTCGTTGGAACCAGATTTTCAGATCCAACATTTGGTTCCT
ATCTTGACTGATTAATGTAACAAAAATGATTTCACCACTTCCGAGCTTCGTCGATGAACGCTCACTTCAATCTAGAGATT
CTTTCAGCCACGTACAAAAGAACTAGTATGTGGGGCCGAGGGCAAGATAAGTTTGTTTGAACTTCAAACTTCAAGATGCA
GGACAAATAAGTCATAGCTGAGTACTCTTGGTCCCATAGAGACAAGACAGACTCTATCGAAGCTAAAAAAACAATGTCGA
ATTGTGCAGAGCTCAATCTTCCAGGAGAAGCATCAGTATCCTACTTAAATTTCCAGACAACACACAAGCACACACGCCAC
AGCACCACACCATTGAAGAGCTTGCTTTCAAGCAAGAAGAATGGGTGAGTCGCCGGTGAAGCTCATCAGCTCGTTCGGCA
GTACGTTCAGCCACCGCGCGGAGGTGGCCCTGCGGCTGAAGCGGGTGCCGTACGAGCTCATTGTCGAAGACCTTCGCAAC
AAGAGCCAACAGCTGCTCACTCACAACCCCATCCACAAGAAGGTCCCCGTGCTCCTCCACGGCGACAGACCACCGATCTG
TGAGTCGCTCGTAATTATCGAGTACGTGGATGAGGCCTTCGCCGGGCGGCCACTCCTCCCCACCGACCCGCACGCCCGCG
CCACCGCCCGGTTCTGGGCTCACTTCATCGACGAAAAGGTATCTGCAAAGCTGTAAACGAGCTCCATAGTTGTGTTGAGA
ACTTGAGATCCATGCCAAAACTTTTTTTCTGTCAACAAAAGGAATACATTTGAACTTTGCAGGCCTAGAGCACATGAGTA
CTGCACTATGCAGAACTGTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGAAGCATCA
AAAGTATCTTAAATGAACCCTAGTGTTTTAGATATTTATGTTACAAAAAAAACATG--ACCATTTCTGCACACGTTA-TA
TTCATGTGTTGCCTGCCTGGAAAGTTTCAAGTTCAAATATTGTTTTGCTTGGAAGAAACAAAAAAATAGAAAAATTTCTA
CAGTGATAGAGCAGGAACCTTGATGTAAATTTAGAAGGCCCGGATAGAAGGCATACCTCTGCATGGTGTCTCAAAAAATG
GGTATATAATTGCGTGCAATGTTGCGGAACCCATGGGTGTTCTGAAACAATATGTTGATTAAATATGCAGTGCATGAAGT
CGTTGTGGGCGGCGCTATGGATGGAACCTAGCGAGGCACAGAGACGATCCTTGGTAGAGGCAAAGGGGAGCCTCGCGTTG
CTAGAGGAGCACCTCGGGGAGAGGAGTTTCTTCGGTGGTGACTCCATCGGGCTCGTGGACATAGCAGCTAGTGTACTGGC
ACACTGGCTTGGAGTCATGGAGAAGATCTCCGAAGTGACCGTGGTCACGGACGAGGAGTTTCCGGCACTTTGCCATTGGG
CTAGACGGTATGTTAGTGATGAGGATGTGAAGACATGCTTGCCGGAGAGGGGTGAGCTCGTTGCCATGTTCTCTGGGTGC
AAGGAGATGTTTCGATCAATGGCAATGGCGCCGCCACAGCAGTGAAGTCGTCCACTTTAATTTGTCTTTTGT-TTTTTCT
ACCACTTTCCCACGATCTTATCCTTTA-TTTCCTTGCATTGTAACACGCTTTTATGGTTTCTGCTAAATTGGGATTAATA
AAGTGAGAGCTTTCTTCAGAATAATACTCCCTCCATCCCAATATACAAGGCTACTACACACTTT----TATGTCTAAATT
TGACCATTAATTTTATCAACAAAAAGCGAGTTATATGCAACAAAAAGTATGTCATTGGATGCACATTTGAAAGAATTTTC
CGATGATATATGTTAGATGTCATATAACCAGTGAAAAAGATAGCGCACTATAGCGTCGCTAATAGCATGTTATAGCGTTC
TGAGCAATGTCTCACTAAATTAATCGATGTACAATGTTCCGCTAATAGCATGTTATAGTGCGATATAGCACGCTAATAGC
ATATCTTAAGAGACACATTATTTTGTCATAGCATGCTATTTTTTTTCATTGCATATAACTCATATTTTTTTGACCAAAAT
AAGAAGTTCCAGTTTGATACGAAAAACAAAGTGGCCTTGTATACAGAAATGGAGGGCGTATTGTATCACATCAGTATTAT
AACCTAGAAATAACCATTTCCAGCTGACTGCTGTTAC--CGGTTAACCGAGAAATAACCATTCATAGATCGATGAATCAT
AGCCGCTCTTACAAAATTATTCATACTTCTATGTCAGCAAAT--AAAAAATCCATAGCTAACAAGAAAACG----AAATA
AAAAATCCACGATCTACTTTCTATGTCAGCAACAGCATGCCGATCAAGAAACTTT-------------------------
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---GACTTCGGATGCCATTGCTCGCTTGGAAACGTACACAATAGTACTACAACATTAATTGATACGCATGTCAAACAAAG
TCACCATCGTTTTGCTACATTATATTATCTCCTCCGTTTGATCTGCCCACTGCATTCTAAATATATTGTCTAGGTAAACC
AAATCGGTTGTCTGACCTGCAGCTGCATCAATAACAGTGAGGATCAC
>chr3B_1
AGCGCCAGCACCAAATGGACATGTGGTGGAGGAGCATCTTACTCTTGATTGAGAGGTCTTCGTCGAATTAAACCATGTAT
GGGATGAGCCAAATGTTCACTTCTGTTTTTTAAGTTAAATTCTATACTTTCCTGAGTTTGAAATATTTCAGATTCCAGTT
GGAAATTCTGCAATCCCGGAATTTCCGGCAACATTCTGCTAATCCCAGACTAAGTTTATCTATTTAAACTAAATTTAAGT
GAACTGAATTTCCGTTAATCGTCCTTTGTTGTTCTCTACCACTGTACCACATATATATGCTGCAGAGAGTGAATTCCAAC
GTGGCATGTTCAACTGGTTTAAATTTTATTAGAGACAGGACCGGATTTAATCACCACAGACCTTGTTTTAAACAGGGTTT
TACTTACGACTGGAGGAAGTATTGGTGGGGCAGAGGTAGCTTCGGTTACCGCTGATACTCATTACCGCCCAAAGTTCTAT
ACAAATTTGCTACAATTTGATTAATTATTTTTTGCATTCATACAAAC--TATATCGAAATGGTTTTGCAGCTATATAATT
GTTGAACATGTGGGGGTGTGGTTAGGCTGTAGCTATAACCCTCGTCTGAACCAGATTTTGAGATCCAACATTTGGTTCCT
ATCTTGACCGATTAATGTAACAAAAATGATTTCACCGCTTCCAAGGTTCGTCGATGAACGCTCACTTCAATCTAGAGATT
CTTTCAGCCACGTACAAAAGAACTAGTATGTGGGGCCGAGGGCAAGATAAGTTTGTTTGTACTTCAAACATCAAGATGCA
GCACTAATAAGTAATAGCTGAGTACTCTTTGTCCCATAGAGACAAAACAGACTCTATCGAAGGT-AAAAAACAATGTCGA
TTTGTGCAGAGCTCAATCTTCCAGGAGAAGCATCAGTATCCTACTTAAATTTCTAGACAACACACAAGCACACACACCAC
AGAACCACGCCATTGAATAGCTCGCTTTGAAGTAAGAAGAATGGGTGAGCCACCGGTGAAGCTCATCAGCTCATTCGGCA
GTACGTTCAGCCACCGCACGGAGGTGGCCCTGAGGCTGAAGCGAGTGCCGTACGAGCTCATCGTCGAAGACCTTCACAAC
AAGAGCCAACTGTTGCTCACCCACAACCCCATCCACAAGAAGGTCCCCGTGCTCCTCCACGGCGACAGACCAGCGATCAG
CGAGTCGCTCGTCATTATCGAGTACGTGGATGAGGCCTTCGCCGGGCGGCCCCTCCTCCCCACTGACCCCCACGCCCGCA
CCACCGCCCGGTTCTGGGCTCACTTCATCGATCAAAAGGTATATGCAAAGCTGTAAACGAGCTCCATAGTTGTGTTGAGA
ACTTGAGATCCGTGCGCAGAAC-TTTTTTTCTCAAGAAAAGAAATACATTTGAACTTTGCAGGCCTAGAGCACATGTGTA
CTGCACTATGCAGAACTGTTT-------------------------------TTTTTATTATTATTGCTTTGAAGCATCA
GAAATAACTTAAATGAACCCTAGTATTTTAGATATTTATGTTGCAAAAAGACCATGAAACCATTTCTGCACACTCTATTA
TTCATGTGTTCTTTGCCTGGAAAGTTTCAAGTTCAAATATTGTTTGGCTAGGAAGAAATAAAATAAATCAA----TTCTA
CAGTGGTTGACCACGAACCTTGATGCAAATTTAGAAGGCCCGGATAGAAGGCATACCT--GCATAGTGGCTCAAAAAATC
TGTATATAGTTGCTTGCAATTTTGCACAACCCACGGGCGATCTGAAAATATATGTTGATTAAATATGCAGTGCATGAAGT
CGTTGTGGGCGGCGCTCTGGATGGAACCTAGCGAGGCACAGAGACGGTCCATGGTAGAGGCAAAGGGGAGCCTCGCGTTG
CTAGAGGAGCACCTCGGGGAGAGGAGTTTCTTCGGTGGTGACTCCATCGGGCTCGTGGACATAGCAGCTAGTGTACTGGC
ACACTGGCTTGGAGTCATGGAGAAGATCTCCGGAGTGACCGTGGTCACCAAAGAGGAGTTCCCGGCCCTTTGCCATTGGT
CTAGACGGTATGTAGGTGATGAGGATGTGAAGACATGCTTGCCGGAGAGGGGTGACCTCGTTGCCATGTTCTCTGGGTGC
AAGGAGATGTTTCGATCAATGGCAATGGCGATGCCACAGTAGTGAAGTGGTCCACTTTAATTCGTCTTTTGTGTTCTTTT
ACCACTTTCCCGCGATCTTATCCTTTTTTTTCCTTGCATTGTAACACGCTTCTATGGTTTCTGCTAAACTGGGATTAATA
AAGTGAGAGCTTTCTTCAGAATAATACTCTCTCCATCTCAATATACAAGGCTACTACACATTATTATATATGTCTAAATT
TGACCATTAATTTTACCAACAAAAAGCGAGTTATATGCCACAAAAAGTATGCCATTGGATGCACATTTGAAAGAATTTTC
CGATGATATATGTTAGATGTCATATAA-----------------------------------------------------
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----------------------------------------------------------CTCATATTTTTTTGACAAAAAT
AAGAAGTTCCAGTTTGATTTGAAAAACAAAGTGGTCTTGTATACAGAAATGGAGGGAGTATTGTATCACATCAGTATTAT
GACCTAGAAATAACCATTTCCAGCTGACTGCTGTCAGCGCGGTTAACCGAGAAATAACCATTTGTAGATTGATG-ATCAT
AGCCGCTCTCACAAAC-TATCCATACTTCTATGTCAGCAAACAAAAAAAATCCATAGCTAACAAAAGAAAATTGAAATAA
AGATATCCACGATCTACTACCTCCGTCCTGGTTTATTGTCCCCCTTAGTATTTTGTGCCAAATTTTGACTATGAATTTCA
TTAACAAAATGTTAATGCATGTCACAAAAAATAATATCATTGAAAACTATATTTAAATATGAATCCAATGATACAAATTT
TTATAACTTGCATTAAAATTTTATCAATTAAATCTATCGTCAAGTTTTGGCACAAACTATGAGAGGACCAATAAATCACG
ACGGACTTCGGATGCCATTGCTCGCTTGGAAACGTACACAATAGTATTACTACTTTAATTGATAGGCATGTCAAACAAAG
TCACCATCGTTTTGCTAGATTATATTATCTCTC---TTTGATCTGCCCACTGCATTCT-AATATATTGTCTAGGTAAACC
AAATCAGTTGTCTGACCTGCAGCTGCATCAATAACAGTGAAGATCAC
>SNPs
----------------------------S--------------------------------S-----------------S
-S----------------S--------S--S------------S-----------------------S------S-----
--------S---------S----------------------------------S--------------S--------S--
---------------SS---------------------------------------------------------------
----------------S-----S------S------S--------------------------S----------------
-------S---S------S---------SS---------S--S-----------------S------------S----S-
----------------------------S----SS---SS-------SS-------------------------------
--------------------------S------------------SS------------S--------------------
--------S---------------------------S-----S--S----------------------------------
-----------------------------------------------------------S---------S----------
-S--S-------S----------------S---------------S----------------S-S---------------
S----------------------------------------------------S---------------------S----
--S-----S--------S----S-----S---S----------------S-S--------------------S-------
-----------------S--------------S----------S-----------------S-------------S----
----------S-S-------S---------------------------------------------------S-----S-
S-----------S--------------------------------------S-----------S-----S---------S
-------------------------------SS---------S-------------------------------------
-----------S---SS-S-SSS-----S-S----S-----S----------------------------------S---
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------SS------------
S--S--S-----------------S-----------------S------S-S---------------------SS-----
----------SSS--------------------------------S---S--------S----S--SSS--SSSS-----
-----S-S--S--S-----------S--------------------------------SS----S---S----------S
S-------S----S------S----SS------S---S-S-------SS-------------------------------
----------------S-----------------------------S---S-----------------------------
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--------------------------------S---------------SS-S--------S-----S------------S
-------------SS----------------------------------------S------------------------
------------------------------SS-------S--------S-------------S------------S--S-
-----------S--------------S------------------------S----------------S-----------
-----------------------------S-------S----------------------S-S-----------------
---------------S----------------------S------------S----------------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----
------------------SS--------------S---------------------S-----------------------
S---------------------------------S-S-------------------------SS-----S----S-----
---------S-----SS---S--------------------S----------------------S-S--SS------SS-
-S-S--------------SS--SS---SSSSSSSSSSSS--SSSSS--S-SS--S-------------------------
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----------------------------------------------S---S--S----------S---------------
-----------------S-------------SSSSS----------------------S---------------------
-----S----------------------------------S------
>forward_179
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-------------------------------------------------------------------------------T
GGAAATTCCGCAATCCCGA-------------------------------------------------------------
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>reverse_1133
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------------CTGCTCACTCACAACCCCAT------------------------------------------------
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>forward_956
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--------------------------------------------------------ACAACACACAAGCACACACG----
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>reverse_2136
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-------------------------------------------------------GCTCGTTGCCATGTTCTCTG-----
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>forward_1749
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-------------------------------------------------GGCATACCTCTGCATGGTGT-----------
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>reverse_3015
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------------------------------------------------------TGACTTCGGATGCCATTGCT------
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