>input_sequence_57689
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------------------------------------------------------------------ATGAGACG-AGACC
GGCTTGTAGTACAGGAGTACTGTTGTTCAACGGACTTGTAGCCGGCAAGAATGGCGCCACCGTCCACACGCGCGGCGCTC
GAGAACCTGACGCTGGCGGACGCCGATGCACTCGACTGCGGTGTCTGCTGCCTCCCGCTCAAGCCGCCCATCTTCCAGGT
ACGTA------CTCGCACGCACGCACGCGCCGACCCCCGTCCGTCTCTCCTTCTGCCCGAGCACTAATCGTACGTCGTAA
CAAGATAAATCTGCCTGCCATGTCTCCGGCCCTGCAGTGCGGGGTGGGGCACGCGCTGTGCGAGCAGTGTCGCGGTAAGC
TGGCCTCGGCGCGGACCTGCCACGTGTGTCGCGCCCCGATGGCCGACGGCTACCGCCGGAACCACGACTTGGAGCGGCTG
GTGGAGCCCATCCGCGCGCCCTGCCCCAACGCCGCCTACGGACGCGCCGCCAGACCGGTCTACTACGACGGGCCCCGCCA
CCTCGAAGACTGCCTCCACGCGCCGTGCCACTGCCCCGAGGAGGCCTGCGGCTTCGTCGGCTCGACGGAGATGCTGCTGG
CCCACTTCGCCGGAGAACACGAGTGGCCGTGCACCACCGGCGCCCGCGCCGGGGAGTCCTTCTCCGTGGACCTCGAGGAC
GGCTTCAACGTCGTCATCGTCGGGGACGGCGCCAGGGAGCTGCTGTTCCTGGTGATGGTGTCGCCCGTGTCCCTCGGACG
CGCCGTCTCCGCTGTATGCGTGTGCCCCCGAACTGACGGCGGCGACGAGATCTTCTACGGGGTCGAGCTCGAGTTCGAAA
GATTAGGCGGCTGGTATGGTGAGCGCCTGAAATCTTTCTTCAACGTGGAATGCACGAATCTCTCCAGTGGCCTACCCGAT
CCCGACCACCGCTTCCAGTTCCTCCTGCCCAATTCTGTCAAGCCATATGAGGCAGAAACTATCAACATCCAAGCCTGCAT
TTACACCCAGATACAGTAATGATCCGTTGCTGCCTACTACGTACTAGCTA-GTGTTACGAATCGCACTTGGTCGTCGGGC
TGCATTGCATGCCAACGCTGTGTTTCATCCATGGTGAACCATTCGAAGTA------------------------------
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--------------TTTGATTGATATTCCCGTCATTCGAGTCCTACCAATCAAAAT------------------------
--GCTATGAAGTATGTTGTCTTTTCACCAGCTCAATCTTTTTATACTTCCTCTGTTCCAAAATATA--------------
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>chr2A_1_TraesCS2A01G446400
GCCCCTCTTCGTACAGAGCAATCCCACATTCATCATCGCATCACCAGGCCAAAAACACGCCACTGCATACCCTACATCGA
CCAACTCCCTCCTCGTCAACTCATCGATAGAACCCTACCTTGACCACGCCATCACGCGAAATGGAAATCCTAATGGAACG
AATTGAATAAACGAGCACCACTGCGTACCCTAACCAGCACGGGAAGAACACGGACCCCCCTCCCCCCACCCACCAAATTG
CGTACAAAATTT-AGAGTGAAAACGAGGGGAGTTGGGAGGCGAGTTTATCAACGCACCGCCGAACCATCTCCTCGCAAGC
CGAGAACGACGCCGACCTCACTTGGCCTCGCCCTCTTCGAGACGCTTCGCCCTAGGCAGACGTTTCGACCGCTTCCGGAC
GCTTCGCCTCGACCAGGTGTCACCTGGG-CGCGATCGGTGATCGATCTGACGGCTCACGAAGGGTGTGCTCACAACACCC
AGAAAATGCAACTGCACTAATTAGAATTTAGGTTCTATAATGTGCTGACAGTCGGT--CCGTACATATGTGCTGCATAAC
ACCCCCATCCCGGCCATTCCATGGAATCCTCGTTTGGATACGGCCTTAAGGTTAAAAATTATCCATATTACAGAGAACAA
GGCACATTCAGGGATT-AGGCACGGGGTTCGTTTGCGTCGAGCTTTACAATCTAAGGGTTTAAAATAGGCTTCACTCCTT
CTACTCGGGCTCAAATAGAGACCCTCTCAGCCTAATAAAAAATACTCTAAATTTTATGAATATGAGAGTCGCAGGGAAGA
TCGATCGATCAACGAATTTTGTG------------CTCCTTGGGACTAGGCGTACGTGTTGGTTGGGACACAAATCGAGA
AACACATTAACACGGGAAGCAGTAGCGCGCTGGCGATCGAAAAGGCTCTCGGGATGCTGGATGGATTTATTAATTTATT-
----ATTAGCGAGACGAGTGACACAAGATATATACCGGCCGGCCGGCG----AGGAAGATACTACCATGAGACG-AGACC
GGCTTGTAGTACAGGAGTACTGTTGTTCAACGGACTTGTAGCCGGCAAGAATGGCGCCACCGTCCACACGCGCGGCGCTC
GAGAACCTGACGCTGGCGGACGCCGATGCACTCGACTGCGGTGTCTGCTGCCTCCCGCTCAAGCCGCCCATCTTCCAGGT
ACGTA------CTCGCACGCACGCACGCGCCGACCCCCGTCCGTCTCTCCTTCTGCCCGAGCACTAATCGTACGTCGTAA
CAAGATAAATCTGCCTGCCATGTCTCCGGCCCTGCAGTGCGGGGTGGGGCACGCGCTGTGCGAGCAGTGTCGCGGTAAGC
TGGCCTCGGCGCGGACCTGCCACGTGTGTCGCGCCCCGATGGCCGACGGCTACCGCCGGAACCACGACTTGGAGCGGCTG
GTGGAGCCCATCCGCGCGCCCTGCCCCAACGCCGCCTACGGACGCGCCGCCAGACCGGTCTACTACGACGGGCCCCGCCA
CCTCGAAGACTGCCTCCACGCGCCGTGCCACTGCCCCGAGGAGGCCTGCGGCTTCGTCGGCTCGACGGAGATGCTGCTGG
CCCACTTCGCCGGAGAACACGAGTGGCCGTGCACCACCGGCGCCCGCGCCGGGGAGTCCTTCTCCGTGGACCTCGAGGAC
GGCTTCAACGTCGTCATCGTCGGGGACGGCGCCAGGGAGCTGCTGTTCCTGGTGATGGTGTCGCCCGTGTCCCTCGGACG
CGCCGTCTCCGCTGTATGCGTGTGCCCCCGAACTGACGGCGGCGACGAGATCTTCTACGGGGTCGAGCTCGAGTTCGAAA
GATTAGGCGGCTGGTATGGTGAGCGCCTGAAATCTTTCTTCAACGTGGAATGCACGAATCTCTCCAGTGGCCTACCCGAT
CCCGACCACCGCTTCCAGTTCCTCCTGCCCAATTCTGTCAAGCCATATGAGGCAGAAACTATCAACATCCAAGCCTGCAT
TTACACCCAGATACAGTAATGATCCGTTGCTGCCTACTACGTACTAGCTA-GTGTTACGAATCGCACTTGGTCGTCGGGC
TGCATTGCATGCCAACGCTGTGTTTCATCCATGGTGAACCATTCGAAGTA------------------------------
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--------------TTTGATTGATATTCCCGTCATTCGAGTCCTACCAATCAAAAT------------------------
--GCTATGAAGTATGTTGTCTTTTCACCAGCTCAATCTTTTTATACTTCCTCTGTTCCAAAATATACGTCGTTTTAGCAA
GCTGTTTTAGCTTGCTAAAACGACTTATATTATGAA----ACGGAGGGAGTATGAAGTAAAGCAAGTGCAAAGACATCCG
ATGAACCGGATGGTACATGCACTTGGG---TGAACTGGATGTGTATGTTGCTCTATCAAAGGAGACACGTTTCCAACCAC
GGCACATTCAACTTAATTCATCATATAGACACTGACGCCACGGGTTAAAAAC-AGGGCATCATACTCGTACACACGTCAA
ACTGCCGAAACATAGAGAAATATATCCATTAACACACTG--AATTTATTTGCATAGACATGGAACAAATCACGACACAAC
CACCAGTACCAGTAAATGTCAATGATTTTTGCAAGGTTTCACTGCAACGGTTCCGTTCATGATACAAGGGGACAACTGGC
ATCCTGAATATGCAGATTCTTCTCAACAACAGGCACGGAAATCAATGGACTAAAGACGCAGATTTATGTTCATAAACACT
-TAAATAACTGAGCGAGTACACGGATGTAG-------------------GCCGCCAAATGCTGGTAACGCCGCCAAGGCA
AATGCACCTTGGGACGACTGTGTATGCACATACAGGGAAGCTTCAGAAATTGCGCTTGCACCGAGGCTGCAGATATGGGA
GAGCCTGTGTCAGTCGTCTGCGGTATGTTGCTTGCATCCCCTGGGACCAAAATGCTGCGACGTCTTGAGGACAACCTTCC
GGCACAGAGCACAGAAGTGTCGTTGGCATGCCCAGCAGTAGAGATGGTTGTTGTTTCCGATCTGCACCAAGTTACCAAAG
CAAATAGAGAATCATGAGGAATGGCGGGGTATT-GTGCAACATGGTAAGAACAATGATATTACGAT-CTGAGGTCGTTAA
GATCTATGAATTCACACCCGTAAATGAATATCTGTGAATTCACTAGGAGTGTGTGGGGAATGGTTATAGCCT-GACATCT
GTTGACTGAAGCAAAAAAAAAAGGT---AAACTGACCTAAACATCATGCTGATTTAATTACT
>chr2B_1
GCCCCTCTTCATACAGAGCAATCCCACATTCATCATCGCATCACCAGGC-AAAAACACGCCATTGGATACCCTCCATCGA
CCAACTCCCTCCTCGTCAACTCGTCGATAGAACCCTACCTCGACCACGCCATCACGTGAAATGGAAATCCTAATGGAACG
GATCGAATAAACGAGCACCACTGGGTACCCTAACCAGCACGGGAAGAACACGGGAAAT----CCCCCACCCACCAGATTG
CGTACAAAAATTCAGAGTGAAAACGAGGGGAGTTGGGAGGCGAGTTTATCAACGCCCCGCTGAACCATCTCCTCGCAAGC
CGAGAACGACGCCGACCTCACTTGGCCTTGTCCTCTTCGAGACGCTTCGCCTCGGGCGGATGTTTCGAT----------C
GCTTCGCCTCGACCAGGTCTCACCTGGGGCGCGATCGTTGATCGATCTGACGGCTCACGAAGGGTGTGCTCGCAACACCC
AGAAAATGCAGTTGCACTAATTATAATTTAGA-TCTGTAATATGCTGACAGTCGGGTCCCGTACATATGTGCTGCATAAC
AGCCCCATCCCGGGCATTCCATGGAAACCTCGTTTGGATACGGCCTTAAGGTTAAAAATGATCCCTATTACAAAGAACAA
GACAC---------------------------------------------------------------------------
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>chr2B_634
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-----------------------------------------------------------------------------CAA
GACACATTCAGGGATTTAGGCATGGGGTTCGTTTGCACTGAGCTTTACAATCTCAGGGTCTAAAATAGACTTCACTCCTT
CTACTCAGGCTCAAATAGAGACGCTCTCAGTCTAATAAAAAATACTCCAAAATTTATGAATATGAGAGTCGCAGGGAAGA
TCGATCGATCAACGAATTTTGTGACTACGGGCGGCCTCCTTGGGACTAGGCATACGTGTTGGTTGGGACACAAATCGAGA
AACACATTAACACGGGAGGTACTAGCGCGCTGGA-------------------ATGCTGGATGGATTTATTAATTAGAGT
ATTAATTAGCGAGACGAGTGACACAAGATATATACCGGCCGGCTGGCGAGGAAGGAAGATACTATGAGACGATCAAGACC
GGCTTGTAGTATAGGAGTACTGTTGTTCAACGGACTTGTGGTCGGCAAGAAT---------GTCCACACGCGCGGCGCTC
GAGAACTTGACGCTGGCGGACGCCGATGCCCTCGACTGCGGTGTCTGCTGCCTCCCGCTCAAGCCGCCCATCTTCCAGGT
ACGTATACGTACTCGCACGCACGCACGCGCCGACCCCCGTCCGTCTCTCCTTCCGCCCGAGCGCTAATCGTACGTAGTAA
CAAGATAAA----CCTGCCATGTCTCCGGCCCTGCAGTGCGGGGTGGGGCACGCGCTGTGCGAGCAGTGCCGCGGCAAGC
TGGCCTCGGCGCGAACCTGTCACGTGTGTCGCGCTCCGATGGCCGACGGCTACCGCCGGAACCACGACTTGGAGCGGCTG
GTGGAGTCCATCCGCGCGCCCTGCCCCAACGCCGCCTACGGATGCGCCGCCAGACCGGTCTACTACGACGGGCCCCGCCA
CCTCGAGGACTGCCTCCACGCGCCGTGCCACTGCCCCGAGGAAGCCTGCGGCTTCGTCGGCTCCACGGAGATGCTGCTGG
CCCACTTCGCCGGAGAGCACGAGTGGCCGTGCACCAGCGGCGTCCGCGCCGGGGAGTCCTTCTCCGTGGACCTCGAGGAC
GGCTTCAACGCCGTCACCGTCGGGGACGGCGCCAGGGAGCTGCTGTTCCTGGTGATGGCGTCGCCCGTGTACCTCGGACG
CGCCATCTCCGCTGTATGCGTGTGCCCCCGAACTGACGGCGGCGATGAGATCTTCTACGGGATCGAGCTCGAGTTCGAAA
GATTAGGCGGCTGGTATGGTGAGCGCCTGAAATCTTTTTTCAACGTGGAATGCACGAATCTCTCCAGTGGCCTACCCGAT
CCCGACGACCGCTTCCAGTTCCTCCTGCCCAATTCTGTCAAGCCATATGAGGCGGTAACTATCAAGATCGAAGCCTGCAT
TTACACCGAGATACAGTAATAATTCGTTGATGTCTGCTAGCTAGTGTTAGTGTGTTACGAATCGCACTA-GTCGTCGGGC
TGCATTGCATGCCAACGTTGTGTTTCATTCATGGTGAACCATTCGAAGTAGGGCAATTTGAGGAAATGCCACACTTTTCC
TGGTACTTTGCTCCTATAGCACACCTTTCATTTTATTAGATTAAATACCACACTTTATATTGATAACTAGATAAAACACC
ACAGAATGGATTTTTTCCTTCGTTTCCACGTCCAGACCCACCCTTCATATTTAATAAGACGGATTTGCCCTCCGAGTCGT
TTCCATCGAACCTTTCCTGGTCTTATGAAACGATGAATCCACATGAGATAAATAGATAAAGCAGTGCGCCGCTGCCTCGT
CATGCCTCCTCCGGTCCTCCTGAACGCTGCCGCCTCGCCATGCGTCCTCCCCGGTGAGCCGCCGCCTCGCCGTGCCTCCT
CCCCGGCGAGCCGCCCGTTCCTATGCAGGAAGCAGCGCCGTCCGCCGCGCTCCAGCCCCTCCGCCTTGCGAGAGAAGAGA
GGCGCCGGCTCTTGAAGTGCCCCTGCAGCACGCGCCCCGTCCAGGTGTAGCTGTACAAGCCTGCTAACTGTTGGTGGCTG
TACTGGCTGTCTGTTGGTCGTTGTACATGCATGTTGGCTGGAGCTGCTCGTTGCTCAAATTATTAGCTTTTTAGCATATG
GCTCAACTAAAAAACTAGTGGCACAGACTAACAACTTTGTACGTGCTGATGGTTTAGATGTAGGAACTGTTACAAGAGGA
TATGGAAGCTTCTTCATATGGATGTAATCAAACTTCAGATTGAATGGATGTAACACGTTTTGATGTTTAGTTTAGTGGAT
ATGGGAGAGGAGTGGCAAGCTGTTGGGCGGTGGCAGAACGTACGTGCATGGGAGGAGAAGAAGCAGTATGAATCACAGCG
AGGCGGCAGCGCGCCGGGAAGGAGGAACGGCGATGTAGTGTTCTGGGATAGGAGGCACGTTGAGGCGGCGGCGCGGTGCT
TCGTTCTAGTCAGCTGCGTTCATCGTTTCTCCTTTTTTTGATCTGTTGATCGTGGAAACGGCCTGAGGGTAAATCTGTCC
TGCACAAATTTGTTGTGGGTCTGGGTGTGGAAAAGAAGGGGGAAAATCAATTTGTGGTATTTTGTCCAACTATCAATCAA
AGATGTGCTATTTACTCCAATAAAAAGAAAGGTGTGGTATAGGAGCAAAGTGCCAGGAAAGCCGTGGCATTTTCTCAAAT
TGCTCTTCGAAGTATTTGATTGATATTCCCGTCACTCGAATCCTACCAATCAAAAGGCTCTGAAGTTGTATGCAAGAAAA
AGGCTATTTAGTATGTTGTCTTTTCACCAGCTCAATC-TTTTATACTTCATCTGTTCCAAAATATAGGCC----------
---GTTTTAGCTTGCTAAAACGACTTATATTATGAATGAAACGGAGTGAGTATGAACTAAAGCAAGTGCAAAGCCATCCG
ATGAACCGGATGGTACATAATGCGCTTCGATGAACTGGATGTGTACGTTGCTCTATCAAAGGAGACAGGTTCCCAACCAC
GGCACATTCAACTTAATTCATCATA----CACTGACGCCACGGGTTGAAAAA-AGGGCATCATACTCGTACACACGTCAA
ACTGCCCGAATATAGAGAAACATATCCATTAGCACACTGTAAATTTATTTGCATAGACATGGAACAAATCACGACACAAC
CACCAGTACCAGTAAATATCAAAGATTTTTGCAAGGTTTCACTGCAACGATCCCGTTCATGATACAAGGGGACAACTGGC
ATCCTGAATATGCAGATTCTTCTCAACAACAGACACGGAAACAAATGGACTAAAGACGCAGATTTATGTTCATAAACACT
ATAAATAACTGAGCAAGCACACGGATGTAGGAGAGTTGGAACCAAGTTTGCCGCCAAATGCTGGTAATGCCGCCAAGGCA
AATGCACCTTGGGACGAGTGTGTATGCACATACAGGGAAGCTTCGGAAACTGCGCTTGCACCGAGGCTGGAGATATGGGA
GAGCCTGCGTCAGTCGTCCGCTGTATGTTGCTTGCATCCCCTAGGACCAAAATGCTGCGACGTCTTGAGGACGACCTTCC
GGCACAATGCACAGAAGTGCCGTTGGCATGCCCAGCAGTATAGATGGTTGTTGTTTCCGATCTGCAGAGAGTTACCAAAG
CAAATACAGAATCATGAGGAAGAGCAAAGTATTCGTGCAATGCAGAAAGAAAAATGAAATTACAAAGCTGAAGTCGTTAA
GATCTATGAATTCACACCCATAAAAGAATATCTGTGAATTCACTAGGAGTATGTGGGGAGTGGTTATAGCCT-GACATCT
GTTGGCTGAAGCAAG---AAAAGGT---ACACTGACCTAAACATCACGCTGATTTAATT---
>chr2D_2398
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----------------------------ACACTGACGCCACAGGTCAAAAAAGAGGGCATCATACTCGTACACACGTCAA
ACTGCCGAAATATGGAGAA--ATATCCATTAACACACTGTAAATTTATTTGCATAGACATGGAACTAATCACGACACAAC
CACCAGTACCAGTAAATATCAAAGATTTTTGCAAGGTTTCACTGCAACGGTTCCGTTCATGATACAAGGGGACAGCTGGC
ATCCTGAATATGCAGATTCTTCTCAACAACAGACACGGAAACGAATGGGCTAAAGACGCAGATTTATGTTCATAAACACT
ATAAATAACTGAGCGAGCACACGGATGTAGGAGAGTTGGAACCAAGTTCGCCGCCAAATGCTGGTAACGCCGCCAAGGCA
AATGCACCTTGGGACGGGTGTGTATGCACATACAGGGAAGCTTCGGAAACTGCACTTGCACCGAGGCTGGAGATATGGGA
GAGCCTGCGTCAGTCGTCTGCGGTATGTTGCTTGCATCCCCTGGGGCCAAAATGCTGCGACGTCTTGAGGACGACCTTCC
GGCACAATGCACAGAAGTGTCGTTGGCATGCCCAGCAGTAGAGATGGTTGTTGTTTCCGATCTGCACCAAGTTACCAAAG
CAAATACAGAATCATGAGGAAGGGCAAAGTATTCGTGCAATGCAGAAAGAAAAATGGAAGTACAAT-CTGAAGTCGTTGA
GATCTATGAATTCACACCCGTAAAAGAATATCTGTGAATTCACTAGGAGTATGTGGGGAATGGTTATAGCCAAGAAATCT
GTTGGCTGAAGCAAG---AAAAAAAGGCAAACTGACCTAAATATCACGCTGATTTAATT---
>SNPs
----------S--------------------------------------S------------S--S-------S------
----------------------S-----------------S---------------S-----------------------
S--S-------------------S-----------------------------SSSSSSSSS-------------S----
---------S---------------------------------------------S----S-------------------
----------------------------S-S--------------------SSS---S--S-------SSSSSSSSSSS-
------------------S------------------S---------------------------------S--------
----------SS-----------S-------SS---S----S-------------S------------------------
-S-----------S------------S--------------------------------S----S-------S-------
-S--------------------S-------------SSS--------------S-----S--------S-----------
------S---------------S-------S----------------S---S----------------------------
---------------------------------------------------S----------------------------
-----------------S-S-S-----------SSSSSSSSSSSSSSSSSSSS----------------------SSSS-
-------------------------------------------S--------------------SS-SSS--SS------
-----------S---------------------------S-S----------SSSSSSSSS-------------------
------S----------------------S--------------------------------------------------
-----------------------------------------------------S--------S------------S----
---------SSSS--------------------------------------------------------S-----S----
-------------S-----S--------------S---------------------------------------------
------S-----------------------------------S-------------------------------------
------S-----------------------------------S--------------------S----------------
----------------S-------------------S-----S-------------------------------------
----------S-----S-----------------------------------------S-----------S---------
----S----------------------------------------S---------------S------------------
-------------------------------------S------------------------------------------
------S----------------------------------------------S-S---------S---S----------
-------S------------S--S-----S--S--S---SS--S-SSSSS------------------SS----------
-----------------S----------S---------------------------------------------------
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----------------------------------S----S---------------S------------------------
-------SS----------------------------S-----------S----------------S-S-SSSSSSSSSS
SSS-------------------------------------------S---------S----------------S------
------------------SSSSSSSSS------------------S---------------------S---S--------
-------------------------SSS-----------------------S----------------------------
----------S---------S-----------------------------------------------------------
-----------------S----S---------------------------------------------------------
--------------------------------S--------SS-------------------------------------
-----------------S--------------------------------------------------------------
-----------------S--------------------------S----S-------------------S----------
-------S----------------------------------------------------------------S-------
------SS------------------------------------------------------------------------
------S--------------S---SSS------------SSSS-S-----S-----S-----S-------S--------
------------------------S-------------------------S-----------------------------
----S---------SSSS----------------------------S------------SSS
>forward_1025
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---------------------------------------------GCCGGCGAGGAAGATACTAC---------------
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>reverse_4088
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-------TGTCAGTCGTCTGCGGTATG-----------------------------------------------------
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