>input_sequence_57687
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--------------------------------------ATGGCAAAGCGTGACCAGAAGGAGGCGTCTCTCTTGGTGCTC
GTGGCCATGGTGGTCGTCATGGTCGTTCTCGCCGTCCAGGTGAAGTCGGTGGTGGCGGCCGGCGAGTACACCGAGGCCAT
GATGAAAGTTGTGAGGGAACAAGTGAATGCCGTTAACTTCACCGGAAACGACGCCCGCCCCGGCCTCATCCGGCTCATGT
TCCACGACTGCTTTGTCAATGTAAGTAATTGAAGATACTTCGCCGCAAAAAGAAGATACTTTTTGCAATTTCTCGCGAAA
AAATGATACTTTTGGAATATACGT-----------------------------ACCGTGGATATTTGAAAAACTCTTTTG
TTGATGTAACAACAGAATTCTACGTACCGAACTTAGAGCGTAAACTAAGCCATAATATCACGTCGGTATGTCAGGGTTGT
GATGGATCCGTGCTGCTGATGACCTCGCGCGAAAGCAGCGCCGATGGGACGACGGAGAAGGACTCGGGCTTCAACATCGG
CCTCCGTGGCTTCGAGGTGATCGACAAGATCAAGGAGAAGCTCGCCGACTACAAGG---TCACCTGCACCGACGCCGTCA
TCTACGCGGCGCGCGAGGCAGTCTACCTGCTGAGCAACGGCAAAATCGCCTACAACGTCGACGGGCCGGGCCGCAAGGAC
GGCGTCATCTCCAGATCAGAGGACCCGGAAAAATACCTTCCAACCCCCAGCTCCGACTTCGCGGTCCTCGTGAAAAAGTT
CACCGACAAGGTCGTCTTCACTGAGAAGGATGTCGTCGCCCTCTCCGGCGCGCACGCAGTGGGCGTCGCTCACAGCACGA
CCATTAACGTCAC------TGGTACCCCTGAAATGTACCAAACGGCCGTCGGCTGGGAAACATTCAAGGATCCAAATGCA
GTTAAGAACAACGTCCGCGAGTACGACGGCGGCCCGCTGAAGATCTCCTCCGGTTACAAAGACGACAACAAGGAGAGAAT
GGCGGCGAAGGGCGTCCTGGACAACAGCTTCTACAACGCCGTCCTCCAGAAGATGGCGCTTTTCCCATCCGACAGGGTGC
TGGGGGTGAACGCGGTGACCAAGGTGAGGGAGTACATGAATAATGCCGGCACGTGGAACAACGACTTCGGCAGCGCCATG
GAAAAGCTCAGCAAGCTCCGCGCCACGAGCGACCCTTCCAAGATCGAGATCAGGAACGTGTGCAGTAAGACCAACTAG--
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>chr1B_1_TraesCS1B01G096000
GTACAGGCCGCATTTCAAGGTAATTTCATCTTGAATTCTTACACACATATACATTTCATCCTTTTATACTTGCATTTTTT
TCAGATTTTTTTAAAACTAGAAAGTTTGAATTTTGAATTTTTCAAAACTAAAGGGCTCCTTGGAGTCTGTTTGGTGTCAT
GAGATGGTTGTTGCGGATATGGTCATTGTTGTAGTTTGCTGATTGTAGATCAGATCGCTTTGAGTTTTTCTTTTTTATTC
GCCTATGCATAACTTTGATCGGTTGTGTGCATCCTAGCTATGCAGTGTGTTTGCATCCTCTTGATGTCCCATTTCACATT
AATAAAATCCACCCCTAGTCGAAAAAGCCTGATGAAACAATAGAATTGATTAAAGCTTCCTTAGTCATTTTTTTAGCAAA
TCTATTTTATTTTATGAAAA-CATCGCATGGCTAATTAAATTTTTTGATCATTATTTTGCTAGTCCCCATTGAATCATCC
GACTCT---------------------------------CCAACTTCCTTCAGATGCCTGGCCTCGATATATTTGTCTTC
TTTTCGCCTGAGCTAAACTTCTGCAATAGGACTCCATGATTATTGGGATGTCTAACCATGTGCATCAGCTTGGATGATAA
ACATCCAGCA----TAAATGGGAGAAACAAGAGAGGTTGACATGAGTATGCAA--------GTTGATGCGAAATGCCTGG
CTGGAATTCCAGACAGCTTGGACACGTTGAGACGACCAAGCAAAAGCATAGGCGGCGGCAGCTCACCATGTTAATTCGGT
TTATCGGAGCTGAAGAAGTTTAGCACCACTAAGTGCATAATTGTTGTGCACGTTCGACCGATATCA------ATCCGTAT
CTTAGTTAACTATCAGCAGCACGGATCACAAGGCGCATAAACAACTGCTGTGCTTACGTTATTCAGCTGTATAAATACAC
CTGTTGTTCACCACAACTAAATCATCCACAGCTTGCAAGAAGTAATA--------------------------TAGCTAG
CCCAGTTTTTGCGAGTCCAAAAGCAGAAGAGGTCGATCATGGCAAAGCGTGACCAGAAGGAGGCGTCTCTCTTGGTGCTC
GTGGCCATGGTGGTCGTCATGGTCGTTCTCGCCGTCCAGGTGAAGTCGGTGGTGGCGGCCGGCGAGTACACCGAGGCCAT
GATGAAAGTTGTGAGGGAACAAGTGAATGCCGTTAACTTCACCGGAAACGACGCCCGCCCCGGCCTCATCCGGCTCATGT
TCCACGACTGCTTTGTCAATGTAAGTAATTGAAGATACTTCGCCGCAAAAAGAAGATACTTTTTGCAATTTCTCGCGAAA
AAATGATACTTTTGGAATATACGT-----------------------------ACCGTGGATATTTGAAAAACTCTTTTG
TTGATGTAACAACAGAATTCTACGTACCGAACTTAGAGCGTAAACTAAGCCATAATATCACGTCGGTATGTCAGGGTTGT
GATGGATCCGTGCTGCTGATGACCTCGCGCGAAAGCAGCGCCGATGGGACGACGGAGAAGGACTCGGGCTTCAACATCGG
CCTCCGTGGCTTCGAGGTGATCGACAAGATCAAGGAGAAGCTCGCCGACTACAAGG---TCACCTGCACCGACGCCGTCA
TCTACGCGGCGCGCGAGGCAGTCTACCTGCTGAGCAACGGCAAAATCGCCTACAACGTCGACGGGCCGGGCCGCAAGGAC
GGCGTCATCTCCAGATCAGAGGACCCGGAAAAATACCTTCCAACCCCCAGCTCCGACTTCGCGGTCCTCGTGAAAAAGTT
CACCGACAAGGTCGTCTTCACTGAGAAGGATGTCGTCGCCCTCTCCGGCGCGCACGCAGTGGGCGTCGCTCACAGCACGA
CCATTAACGTCAC------TGGTACCCCTGAAATGTACCAAACGGCCGTCGGCTGGGAAACATTCAAGGATCCAAATGCA
GTTAAGAACAACGTCCGCGAGTACGACGGCGGCCCGCTGAAGATCTCCTCCGGTTACAAAGACGACAACAAGGAGAGAAT
GGCGGCGAAGGGCGTCCTGGACAACAGCTTCTACAACGCCGTCCTCCAGAAGATGGCGCTTTTCCCATCCGACAGGGTGC
TGGGGGTGAACGCGGTGACCAAGGTGAGGGAGTACATGAATAATGCCGGCACGTGGAACAACGACTTCGGCAGCGCCATG
GAAAAGCTCAGCAAGCTCCGCGCCACGAGCGACCCTTCCAAGATCGAGATCAGGAACGTGTGCAGTAAGACCAACTAGAG
GCTCCTCGAG---------------AAAATTTGAAACGAGGCAAAACATGATCGCCTTTATTCATTATTATGTTTGTTGA
TTT------------------------------ACTTATATATTATTATGTCGGACGGTATATTATTGTCAAAAGAAAAC
ATGGGCACCGGTGTTTATTTCCTTTGGTTTGACACATGCTCCTCCGTTTTAGTGATCTAAACGCTTTTATATTAGTTTAC
GGAGGGATTACTTATTTATATACGTGTCTCCGGATATAGGTGTGGTTCTGTAATCGTCCACCCAGTTATCCTACTGT---
-----------------------AATAACTATGACAATTAACTAATTGATTGCATGTTGACTTCCCTAAAAAAAACTAAT
TGAGTGGACTATTTTGTGAACTTTCAAAAATTCAAAATATTTTGATAGCTCAAATCATCAGTCCAATTAAAGATTTGTTT
TCATCATTAAAATTCATCACGACAAGACTTTCGAAACTAGACTCAATATTTGTATATTCCGATGATTTTATTTCGGGTAA
AGAGTTACCCAGCTGCAATATACAAGTTGTCAACCTATCCACACAAGCATGACAAATAATTTTGTGTGTGC-AACATTTC
AATCATTTTTATAGGTTGGGAGTTATGATCCTGTAGTATAAGAGTTATCACTATTGTTCG--------------------
------TTACCGATAACATTATGTGCGTTTACTAGC--------------------------------------------
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----------------------------------------------------------------------------GATA
GTTATTGATTACAAAACTAGACCTCACTGCAATTGTTCATGTTTTTTTTTCTAAAGGGGCGCTTTTTATATTACTTAAAA
GATTTAAGTATTACACCCGGTCTCTGCATAACTAATATATACACAGTCAAAAAAAGTCCTCTCACACAAATAAAAAATTT
AAAAGGCGAAATACAAAGAAACATGTAGAGTCCGTGTAACGCCTAAAGCGTTGGGGGAGGGGGGGGGGGGTGATCCTGAG
ATCATGTTGCCACCCATGTTGGGTAAAAGTGTACGCACCTCCGTAAACAAGTTTCGATTCTCCACACGTTGTAGAGAGGA
CCATAAACGAAGAGTA
>chr1D_261
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--------------------GGTTGTGTGTATCTTAACTATACAGTGTGTTTGCATCCTCTTGATGCCCCATTTCACATT
AATTAAATCCACCCCTAGTTGAAAAAGCCAGATGAAACAATAGAATTGATTAAAGCTTCCTTAGTCATTTTTTTAGCAAA
TCTATTTTATTTTATGAAAAACATCGAATGGCTAATTAATTTTTTT-ATCATTATTTTGCTAGTCCCCATTGAATCATCC
GACTCTTCATCTTCTCATAAAAAAAAGGATATCATAGCTCCAACTTCCTTCAGATGCCTGGCCTCGATATATTTGTCTTA
TTTTCGCCTGAACTAAACTTTTGCAATAGGACTCCATGATTATTGGGATGTCG-ACCATGTGCATCAGCTTGGATGATAA
ACATCCAGCGCGCGTAAATTGGAGAAACAAGAGAGGTTGACATAAGTATGCAACTATGCAAGTTGATGCGAAATGCCTGG
CTGGAATTCCAGACAGCTTGGACACATTGAGACGACCACGTTAATTC-------------------------AATTCGAT
TGATCGGGGCTGAAGAAGATTAG---CACTAAGTGCATAATTGCCGTGCACGTTCGACCGATCTATATCTTGATCCGTAA
CCCAGTTATTTATCAGCAGCACGGATCGCAAGGCGCATAAATAACTGCCGTGCTTACGTCATTTAGCCGTATATAAATAC
ACCC-GTTCACCACAACTAAATCATCCACAGCTGAGAAGCATTTCATTCCCAGCTTGCAGGAGCTGACATAGGTAGCTAG
CCCCT--------------------GAAGAGGTGGATCATGGCAAAGCGTAACGAGCT------GTCTCTCTTGGTGCTC
GTGGCCATGGCCGTTGTCGTCTTC---CTCTCCGTGCAGGTGAAGTCGGAGGTGGCTGCCGGCAGCTACACCACAGAGAT
GCAGGAAGCTGTGAGGAATGAAGTGAAGGCCTTCCCCGACCTCCGT------------CCCGGCCTTATCCGGCTCTTGT
TCCACGACTGCTTTGTCAATGTGAGT-------------------------GAAGATACTTTTGGCATTATTGCAGGGGC
CTTGCTTTCAAATTCAGTTTTTTTTTTCCTGTGTTAAAACGATTCAGTATACCACCTTTGTTATTTGAAAATCATTTTTG
TT----------------------------------ACCGTAAGCTGAGCCACAACATCACCATATATT---AGGGTTGC
GATGGATCCGTGCTGCTGGAGACCTCGCGCATCAACGGCACCGATGGGAAGACGGAGATGACGTCGGCCTTCAACGGCGG
CCTCCGTGGCTTAGAGGTGATCCAGAACATCAAGAAGAACCTCGGGACCAAATACAACATCACCTGCACCGACGCCGTCA
TCTACGCGGCGCGCGAGGCGGTCTACCTGCTGAGCAAGGGCAAAATCGCCTACAACGTCACCGGACCGGGCCGCATGGAC
GGCGTCATCTCCAGATCAGAGGACCCGGCAAAATTCCTTCCAACCCCCAGCTTCACCTTCGACCAGCTCAAAGAAAGCTT
CCGGAACAAGAGCTTGAGCACGGACGATGTCA---TCGCCCTCTCCGGCGCGCACGCGATAGGCGTCGCTCACAGAATGT
TCGTCGACGTCAATACTCTTGATACCCCCGTATCGTACCAAAAGGCCGTCGCGGTCGAACTGAGTAATGGTACGGACGTG
ATCAAGAACAACGTCCGCGACTTCGGCGCGG---------------CCTCCGGTTACATGGACAACAACAAGGAGAGAAT
GGAGGCGAAGGGCGTCCTGGACAACAGCTTCTACAACGCCATCAGCCAGAAGATGGCGCTTTTCCCATCCGACAGGGTGC
TGTGGGAGGGCGCCAAGGCCAAGGTGACCGGCTATAAGGATAAAGCCGACACGTGGTACATAGAGTTCGGCAACTCCATG
GAAAAGCTCAGCAAGCTCCCCGCCACGAGCGACCCTTCCAAGATCGAGATCAGGGAGGTGTGCAGTAAGACCAACTAGAG
GCGCCACGACTAGACGCTCCTCGCCAAAATTTGGAACGAGACAAAACATGCTCGCGTTTATTCATTATATATTTATTGAT
TATTATTTATATATTATTATCCTTTTCTAAAAAACTTATATATTATTATGTCGGCA-GTATATTATTGTGAAAA--AAAC
ATGTGGACCGGTGTTTATTTCCTTTGGTTTGACTTACTTATTTGTAAAT-------------------------------
--------------TTTGTATACATGTCTCCGA--ATAGGTGTGGTTTTGTAATCGTCCACGCAGTTATCCTACCGCAAT
AACCATGACAATTGCTCTAAAAAAATAACCATGACAATTAACTAATTGAC------------------------------
----TGGACTATTTGGAGAACTTTCAAAAATTCAAAATGTTTTGATAGCTCAAATCATCGGTCCAATTAAAGATTTGTTT
TCACCACTAAATGTGTCACGAC--AGACTTTCAAAAGTATACTCAATATTGATATATTCTGATGATTTTATTTCGGGTAA
AGAATTACCCAGCTGCAATATACAAGTTGCCAACCTATTCGCACAGGCATGAAAAATAAAACCTTTTTTTGAAACATTTT
AATCATTTTTATAGGTTGGGAGTTATGATCATGTACCATAAGAGTTATCATTACCAAGAACAAAATATTGTGTTCTTGGT
TTGTCATTACCGATAACATTATGTGCGTTTGTCGGAATACTCATAGATAGTTAATTATTGACTACAAAACTAGACCTCAC
TACGACTGTTCATACTAGATAATACCCCGCGGGTTGCAGCGGGACTTTATGCTTCTCAATTGATGCAAAGTGAATTGAAA
TATCATGCGATAATTCAAGTGCTTACTGACAACATATGCCTTGCTTCTTAATTATTTGAGCAAATTTGTAGATCATATTT
CTCTTCAATTTTCGTTAGTGACAAACCAAGAACAAAATCAGACCCTTGTGAGCAACTTAGTTGTGCCATTCCATTGCACA
ATAGTACGATATGTGCACAAAGTTCCATTACAATTGATTATTACCCGACACTCCAGAGTACACAATATTCTCTGTAAAAA
TGGTTTCCTCTTGCTTAATCTGCAACAGGAAACTGCAGCTATTGAAAACTTAATGAATATGGAAAGAATACTCGTAGATA
GTTATTGATTACAAAACTAGACCTCACTACAACTGTTCAT----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------S---S--S----S------------------------S-------------
---S---------------S---------S--------------------------------------------------
--------------------------S------------S------S---------------------------------
-------------------------------------------------------------------------------S
-----------S--------S-------------------------------SS--------------------------
---------S---------S-----------------------S------------------------------------
-------------------------S------------S-SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSS------S-
-S-----S----------S----SSS-----------------SS-----------------S-SS-------------S
-SS-----SS-----------------S-------------S------S----------S---S---S-----S-S-S--
SSSSS----------------------------SSS---S-S-SSSS---------------------------------
---SSSSSSSSSSSSSSSSSSSSSS--------S----------------S--S--SSSSSSSS----------------
----------SS--S---S-SS--SSS---S----S-------------S------S------SSS------SSS-SS--
-SS-S---S-------S-SS-------S---S-SSS-SS-SS-S-SSSSSSSSSSSSS--------S---------S---
----------------------S---SSSSSSSSSSSSSSSSSSSSSSSSS------------S---S-S-SS-SS-SSS
SSSSSS-S-SSS-SS-S-S-SSS---------------------------------S-S-S----------S-SS-----
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-----S--S-----S--S-----SSSSSSS-SSS-------S
------------------SS----------SSS-S-S--S---------S--------S-SSS----S-------SS---
------------S---------S-S--S------S----S----SSSS-S-SS-SS------------------------
-------------------S-----------------S---------------------SS---S----------S----
----------------------------S-----S-----------------S-SS-----SSSSS---SSSS---SS--
-SSSS-----SS-S-SSS---S--SS-S-SSSSSS----------------------SS-S--------------S-S-S
S-S-SS------S--------S------S-S-SS--------S--------SSSSS---SSSSSS--S-S-S-SS-S-SS
S-S-----------------S-S--S--SS-SSSSSSSSSSSSSSS------------SS---S----------------
--S-------------------------------------S--SS-----------------------------------
--S---S-SS---SSS-S---------SS-SS--S-S-S----S----S-------S---SS--S-------S-S-----
-------------------S----------------------------------S-S-----------------------
--S--S---S-----------------------S------S---------S----S------------SSSS--SS-SSS
-S----------------------------------------------------SSS------------S----SS----
---S-S---------------------------SS-SSSSSS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---S-----S--------SSS------------S-------------S------------S-S---
-----------------------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------S-S---------------------S--------------------S--------------------
---S--S----SS-SSSSSSSSSS--------S---S--S----------SS-------S--------------------
---S-------------------------S--------S-S----S------S------SSSSS-S-S-SS--------S
------------------------------S----SS-------------S--SSSSSSS--------------------
------------------------------SSSS-S--------------------------------------------
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----------------------------S---S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_21
-TACAGGCCGCATTTCAAGGT-----------------------------------------------------------
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>reverse_1228
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---------------------------TGCCGTTAACTTCACCGGAA---------------------------------
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>forward_1103
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-------------------------------------------AAAGCGTGACCAGAAGGAGG-----------------
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>reverse_2209
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------------------------------------------------GCACGTGGAACAACGACTTC------------
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>forward_1596
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--------------------------------------------------------GAAGGACTCGGGCTTCAACA----
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>reverse_3785
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------------------------AAAAGTGTACGCACCTCCGT------------------------------------
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