>input_sequence_57557
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--------------------------------------------------------------ATGATGGTTTTGAGCAAT
TTACTGTTCTGTGGTGCGTGCAGCAAAGGGCCATTTGGGTTGATGAGGAGCATGATGGGACCCAAGTACGATGGCGAATA
CGGAGT-------ACCTCCACACGATCGTCAAGAAGCTCCTCGGCGACACAC-GGTCCGCGACACGCTCAACAACGTCGT
CATCCCCACCTTCGACATCAAGCTCCTGCAGCCCACCATCTTCTCCACTTACAACGTATGTGATGTGTGAAGAATAGATT
AATAAGCTATTCCTAGTAGCGTGCTTGTC-------ACCCATTATTGGTACATGCATGCACGCGTGTTGC-----TTGCA
CGGTTGCACCACGC----CCATTGAATGACTGAACTATATGGAACTTG--AA-----TGTAGGCCATGAAGGATAAGTCC
AAGAACGCTCTTCGGTCGGACGTCTGCATCAGCATGTCCGCTGCGCCGACCTACCTCCCCGGCCACCACTTTCAGACAGA
GGGAGAGGATGGCAAGCTCCGGGACTTCAACCTCATCGACAGTGGCGTCGCCGCAAACAACCCGGTGAGTCCTTTGTTCT
TATAAATTCTAACACGACAAGCAACCTCG------ATGAAACTTGTGATAATCT-AAACTAGGCTTATAAGC-----TA-
----ACAGTTGAC----------------------------------------------TTATCTCGATGTGACGTTTAT
GTATCATTCGTTCTCT---ATTTGACAAATTGGCATGGA----TACAGACCCTGCTGGCTATGACGGATGTAAGCAAGCA
GATACTGATGGGGAACAAGGACTTCTTCCCCATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTTTCATTGTGCACCG
GCACTGCCAAGATCGAAGAGAAGTTCGATGCCGCCGAATGCAGCAAGTGGGGCCTCCTCGGGTGGCTCTCCAACAGGGCT
GCCACACCCATCATCGACAGCTTCATCCAGGCAAGCGCGGACCTCGTCGACATCCACGCGTCTGTGCTTTTCCAGGCGTT
GCACTGCGAGAAGCGCTACCTCCGGATCCAGGACAATGAGCTCAAGGGAGAAGCGGCCTCCGTCGACGTGTCCACGCCAG
AGAATCTCATCCGGCTCATCGATGTTGGCCAGGCACTGCTTAAGAGGCAGGTGTGCAAGGTGAACATCGAGACAGGCAAG
AACGAGCCCGACC---AAAACAGGGGCACAAATGAGGAGGAGTTGGTCAATTTCGCACGCATGTTGTCAGAGGAGCGCAA
AGCCAGGCTTTGA-------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G033600
GGTTCCTCGGCGAAGTCTAACGTGACGAGCCACTGTTTCTTGCCAGTGACAGGGTTTTGGATTTGGGTGCCCCACTTCCC
CAGGGCCTCTGGCGAACACCATGGTACCTGCCGTTGTCCGCTATTTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGAGGACGGTCACCTCCCATCAGTGGCGGAGCTAGCACAAGATCATTGGGGAGGGGGAGGGGGC
AGAAGCGGCAAAAGTCCCAATTTTTATCAATCTATGCCATTACAAAAAAAAATCTTCACAAAAGATCGCAGGCCGAGGGG
GTGGGGGGGTGGGGGGCGCAACAGCCCCCGGCCTCCGCC-----------------------------------------
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-------------------------------------------------------------AGTGCCTCACTTGCCACAG
AATTGATGATTTGTTGTAATTTTTGGTAAAAATGGTCGTTTTGAAGTATCCTGTCCACAAATATGATGGTTTTGAGCAAT
TTACTGTTCTGTGGTGCGTGCAGCAAAGGGCCATTTGGGTTGATGAGGAGCATGATGGGACCCAAGTACGATGGCGAATA
CGGAGT-------ACCTCCACACGATCGTCAAGAAGCTCCTCGGCGACACAC-GGTCCGCGACACGCTCAACAACGTCGT
CATCCCCACCTTCGACATCAAGCTCCTGCAGCCCACCATCTTCTCCACTTACAACGTATGTGATGTGTGAAGAATAGATT
AATAAGCTATTCCTAGTAGCGTGCTTGTC-------ACCCATTATTGGTACATGCATGCACGCGTGTTGC-----TTGCA
CGGTTGCACCACGC----CCATTGAATGACTGAACTATATGGAACTTG--AA-----TGTAGGCCATGAAGGATAAGTCC
AAGAACGCTCTTCGGTCGGACGTCTGCATCAGCATGTCCGCTGCGCCGACCTACCTCCCCGGCCACCACTTTCAGACAGA
GGGAGAGGATGGCAAGCTCCGGGACTTCAACCTCATCGACAGTGGCGTCGCCGCAAACAACCCGGTGAGTCCTTTGTTCT
TATAAATTCTAACACGACAAGCAACCTCG------ATGAAACTTGTGATAATCT-AAACTAGGCTTATAAGC-----TA-
----ACAGTTGAC----------------------------------------------TTATCTCGATGTGACGTTTAT
GTATCATTCGTTCTCT---ATTTGACAAATTGGCATGGA----TACAGACCCTGCTGGCTATGACGGATGTAAGCAAGCA
GATACTGATGGGGAACAAGGACTTCTTCCCCATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTTTCATTGTGCACCG
GCACTGCCAAGATCGAAGAGAAGTTCGATGCCGCCGAATGCAGCAAGTGGGGCCTCCTCGGGTGGCTCTCCAACAGGGCT
GCCACACCCATCATCGACAGCTTCATCCAGGCAAGCGCGGACCTCGTCGACATCCACGCGTCTGTGCTTTTCCAGGCGTT
GCACTGCGAGAAGCGCTACCTCCGGATCCAGGACAATGAGCTCAAGGGAGAAGCGGCCTCCGTCGACGTGTCCACGCCAG
AGAATCTCATCCGGCTCATCGATGTTGGCCAGGCACTGCTTAAGAGGCAGGTGTGCAAGGTGAACATCGAGACAGGCAAG
AACGAGCCCGACC---AAAACAGGGGCACAAATGAGGAGGAGTTGGTCAATTTCGCACGCATGTTGTCAGAGGAGCGCAA
AGCCAGGCTTTGACAGAATGGTGGTGTTGAATTCTAGAGACTTGGGGCATTCCTTACTATTCAAATTTGATGAGACCGAC
AAGCACTA--TATATTATTTGTATATA------------TAGATATTCACTACTCCGT-----TCGATAGTCGTTTATAT
TTTTTGATTTGTGTAGATATTCATTCGTTTGTCCAATATTCCTTATATAAACTACTGCTTATAG-ACATGGATGTGCTCA
TTTGTGAATTTCTATCATTTTTCCTACATGATGTG--CCTATCACTTAGTTTTTTCTCAATCTTGCATAGAGTTGGACAG
TCAACGTACAGGTCTTATATATCATTTAGAAGTTTATAAGTCGCATATTCTTGTACTGAGTAAAATGCTCCTGCTTATCT
GCCATTTTCCGGCCTGGGATCAAAATCTAAGTACTCGTCTAATCTTTGGGAAAATAAGAAATCAAATGAAGACAAGGAAG
AAGCCCCTCCTACGGACTTGAGAGCAGCTTAGAGTTATCAACCGGATTTGAGGGACCTAAAAAATGCTCGCAGCATTGAG
GTGGCCTGGTCTTCAGGAATCTAGCCATTAGCCGAGCACTATTTCGATCGTTTCTCATAACATGCATGCAGGAGACAAGA
TCAGAATTGGTTCTTTTTTAGAGAAAAGACTCAGCCCAAGCCTGAAATAGGCTCGGACCAAACCCGGCTTTCAAACAAAG
GCATCAACTGGCCAGGACTACATGAACTGATTTTTTTTTTTCGAAACGGAGGCAAAAGCTTTGCCTCATCTATTAATTAA
GAAGGAGTTTAGAGTTGCTTTTACAAGATTTGACCCAAGTGCTTAGCACCCGCAATTACCCAAAGGTTGGCGTCGCTCTT
AATGTTGGAGAACAATACAAACGGAAGCGTGGATTTGTGACGAAACACCCGTGCATTTCTCTCGCACCAAATGGTCCAGC
AGGTCAGCATAGCAAGAGAAGCCATCGCCTTCCGGTTGGGCATGCTGGAGTTGGACATGTTGAGCCAGCAGTCCT
>chr3B_3
--TTCCTCGGCGAAGTCTAACGTGCAGAGCCACTGTTTCTTGCTAGTGACAGGGTTTTGGATTTGGGGGCCCCACTTCCC
CAGGGCCTCTGGCGAACACCATGGTACCTGCCGTTGTCCGCCATTTTGGGGGAAAAAAGACCTAAAACATGCAGATAAGT
AAATTTGGCGAAAGAACCGTAGAAATCTTC--------------------------------------------------
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-----------------------------AACAACACAATCAGAATTAAAAATAAACAAAAAATATTGACATGAATTCTG
CATAAAAATGGACACATTAAGAGCTAAATTTTAGTGCTAAATTTCTTTTGTACCGGGATCTTGATTTTATGGATCAGATC
GATCCATTTGATTGTCACTGCCCAAAACTTTGGTCTAGTTCAATCTGGGTTTTGTCTAAACCTAATGAACAATTAATCCT
CGTGCTTTTGAACCATTTTGTAAGCTAGTATTAGATATTGCGGCGGACCTTGCCGGCGCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCCTCACTTGCCACAG
AATTGAT-ATTTTTTGTAATTTTTGGTAAAAATGATAGTTTTGAAATACCCTATCCACAAATGTGATGGTTTTGAGCAAT
TTACTGTTCTGTGGTGCGTGCAGCAAAGGGCCATTTGGGTTGATGAGGAGCATGACGGGACCCAAGTACAACGGCGA---
----GTACGGTGTACCTCCACACGATCGTGAAGAAGCTCCTCGGCGACACAC-GGTCTGCGACACGCTCAACAACGTCGT
CATCCCCACCTTCGACATCAAGCTCCTGCAGCCCACCATCTTCTCCACTTACAACGTATGTGATGTGTGAAGAATAGATT
AATAAGCTATTCCTAGTAGCGTGCTTGTCAGTTGTCACCCATTATTGGTACATGCATGCACGCGTGTTGC-----TTGCA
CAGTTGCACCACGC----CCATTGAATGACTGAACTATATGGAACTTGAATGTAGCCTGTAGGCCATGAAGGATAAGTCC
AAGAACGCTCTTCGGTCGGACGTCTGCATCAGCACGTCCGCTGCACCGACCTACCTCCCCGGCCACCACTTTCAGACAGA
GGACGAGGACGGCAAGCTCCGGGACTTCAACCTCATCGACGGTGGGGTCGCTGCAAACAATCCGGTGAGTCCTTTGTTCT
---AAGTTCCAACACGACAAGCAACATCG------GTGAGATT--TGATAATCT-AAACTAGGCTTATAAGC-----TAG
TATAACAGTTGAC----------------------------------------------CTATCTCGATGTGATGTTTAT
GTATCATTCGTTCTTT---ATTTGACACACTGGCATTGA----TACAGACCCTGCTGGCTATGACGGATGTAAGCAAGCA
GATACTCATGGGGAACAAGGACTTTTTCCCCATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTTTCATTGGGCACCG
GCACCGCCAAGATCGAAGAGAAATTCGATGCCGTCGAATGCAGCAAGTGGGGCCTCCTCGGGTGGCTCTCCAACAGGGGC
GCCACACCCATTATCGACAGCTTCAGCCAGGCCAGCGCGGACCTTGTCGACATCCACGCGTCTGTGCTTTTCCAGGCATT
GCACTGCGAGAAGCGCTACCTCCGGATCCAAGACGATGAGCTCAAGGGAGAAACGGCCTTCGTTGACGTGTCCACGCCAG
AGAATCTCAACCGGCTCGTCGACGTGGGCCAAGCACTTCTCAAGAGGCAAGTGTGCAAGGTGAACGTTGAGACGGGCAAG
AACGAGCCTGACC---AGAACAGGGGCACAAAC---GAGGAGTTGGTCAATTTCGCACACATGTTGTCGGAGGAGCGCAA
AACCAGGCTTCGGCAGAATGGTGGGGTTGATTTCTAGAGACTTGGGGCATTCCTTACTATTCAAATTTGATGAGACCGAC
AAACACTA--TATATTATTTGTATAGATACATATTGTTGTAGATATTCATTAATTTGT-----TCTATAGTGGTTTATAT
TTGTTGATTTGTGTAGATATTCATTCATTTGTCCA---------ATATAAACTACTGCTTATATTACTTGGATGTGC---
-TTGTGAATTTCTTTCATTGTTCCTACATGATGGGTACCCATCACTTAGTTTTTTCT-----------------------
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>chr3B_1023
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----TGTTCTGTGGTGCGTGCAGCAAAGGGCCTTTTGGCTTGATGAGGAGCATGATGGGACCCAAGTACAACGGCGA---
----GT-------ACCTCCACTCCGTCGTCAAGGAGCTGCTCGGCGACATGCGGGTCGGCGACACGCTCAACAACGTCGT
CATCCCAACCTTCGACATCAAACTCCTGCAGCCCACAATCTTCTCGACTTACAACGTATGTGATGTGTGAAGAACAGATT
AATAAAAATG---------------------------------------------------------TGC-----TTGCA
CGGTTGCACCACGC----CTGCTGATTTA------CATATGAAACATG--TA-----TGTAGGCCATGAAGGATAAATCC
AAGAACGCTCTTCTATCGGACGTCTGCATCAGCACCTCCGCTGCGCCAACCTACCTCCCCGGCCACCACTTCCGGACAGA
GCACGAGGACGGCAAGGTCCGGGAATTCAACCTCATCGACGGTGGCGTCGCTGCAAACAATCCGGTGAGTTCGTCGTGCT
---AA-------CACGACACGCCACCTCAATT--AGTGAGACT--TGCTAACCT-AATTGATTAGCTTATCATCTAATAG
TATAACAGTTAATTAACTGTCATCCGGTTATGATGTTGATGTATGGAAACAGTTGACTATCATCCGGTAATGATGTTGAT
GTATCGAACATTCTCT---GTTTGACAACTGACATGGATAGATTACAGACCCTGCTGGCAATGACGGACGTCAGCAAGCA
GATCCTAATGGGAAACCCAGACTTCTTCCCCATCAAGCCCGCGGACTACGGCAAGTTCATGATCCTTTCGCTGGGCACCG
GTACCGCCAAGATCGAAGAAAAGTTTGATGCTGCCGAGTGCAGCAAGTGGGGCCTCCTGGGGTGGCTCTACAACAGGGGC
GCCACGCCCATCATCGACAGTTTTAGCCAGGCCAGTGCCGACCTTGTCGACATCCACGCCTCTGTGCTCTTTCAGGCGCT
TCACTGCGAGAAGCGCTACCTCCGGATCCAGGATGACGAGCTCAAGGGCGAGACGGCCTCCGTTGATGTGTCAACGCAGG
AGAACCTCAACCGGCTCATCGACGTTGGCAAGGCGCTTCTCAAGAGGCAGGTGTGCAAAGTTAACGCCGAGACGGGGAAG
AATGAGCCCGACC---AAAATAGGGGTACAAATGAGGAGGAGTTGGTCAATTTCGCACACATGTTGTCGGAGGAGCGCAA
AGCCAGGCTTCAGAAGGAGGGCAATGTTGATTTCTAAAGACTTGGGGCATTGCTTACTATTCGAATTTGATTAGACCGGA
GAGCACTACCTAAATTATTCATATAGATGT-TATATTTGTGTACAT--ATTCATTAATTTCTCT-GATAGTCGTGTATAT
CTTTTGGTTTGTGTAGACATTCATTCATTTGTCCAATATTCATTGTATAAACTACTACTTATATGGCATGGATGTGCTAA
TTTGTGAATGTCTTTCATTGTTCCTACATGATG-----------------------------------------------
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>chr3A_1023
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----TGTTCTATGGTGCGTGCAGCAAAGGCCCTTTTGGCTTGATGAGGAGCATGATGGGACCCAAGTACAACGGCGA---
----GT-------ACCTCCACACGGTCGTCAAGAAGCTCCTCGGTGAGACGCGGGTCGGGGACACGCTGAATAACGTCGT
CATCCCAACCTTCGACATCAAACTTCTGCAGCCCACAATCTTCTCGACTTACAACGTATGTGATGTGTGAAGAACAGATT
ACTAATAA-----------------------------------------------------GCATGTTGC-----TTGCA
CGGTTGCACCACAC----CTGCTGATTTA------TATGTGAAACATGCATA-----TGTAGGCCATGAAGGATAAATCA
AAGAATGCTCTTCTATCCGACGTCTGCATCAGCACCTCGGCTGCGCCGACCTACCTCCCCGGCCACCACTTCCAGACAGA
GCACGAGGACGGCAGGCCCCGGGACTTCAACCTCATCGACGGTGGCGTCGCCGCAAACAATCCGGTGAGTCCGTCGTGCT
---AG-------CACGGCACGCCACCTCAATT--AGTGAGACT--TGTTAACCT-AATTAATTAGCTTATCATCTAATAG
TATAACAGTTAATTAACTGTCATCCGGTTATGATGTTGATGTATGGAAACAGTTGACTATCATCCGGTAATGATGTTGAT
GTATCGAACATTCTCT---GTTTGACAACTGACATGGATACATTACAGACCCTGCTGGCAATGACGGACGTCAGCAAGCA
GATCCTGATGGGAAACCCAGACTTCTTCCCCATCAAGCCTGCGGACTATGGCAAGTTCATGATCCTTTCGCTGGGAACCG
GTACCGCCAAGATCGAAGAGAAGTTCGACGCTGCTGAGTGCGGCAAGTGGGGCCTTCTTGGGTGGCTCTACAACAGGGGC
GCCACACCCATCATCGATAGCTTCAGCCAGGCCAGTGCCGACCTTGTGGACATCCATGCCTCTGTGCTCTTTCAGGCGCT
TCACTGCGAGAAGCGATACCTCCGGATCCAGGACGACGAGCTCAAGGGCGAGACGGCCTCCGTCGACGTGTCAACACCGG
AGAACCTCAACCAGCTCGTCGACGTTGGCAAGGCGCTGCTCAAGAGGCAGGTGTGCAAAGTGAACGCCGAGACGGGGAAG
AACGAGCCTGACC---AAAATAGGGGCACAAACGAGGAGGAGTTGGTCAATTTCGCACGCATGTTGTCAGAGGAGCGCAA
AGCCAGGCTTCGGAAGGAGGGCGATGTTGAACTCTAGAGACTTGGGGCATTCCTTAGTATTCGAATTTGATGAGACCGAC
AAGCACTACCGATATTATTTGTATAGATAGACATATTTGTGTACAT--ATTAATTTGT-----T-GATGGTCATTTATAT
CTGTTAATTCGTGTAGATATTCATTCGTTTGTCCAATATTCCTTGTATAAACTACTGCTTATATGGCATGGATGTTCCGA
TTTGTGAGTTTCTTTCATTGCCCATACATGTTGGGTAACTGTCACTTGGTTTTTCCTCAACCTTG---------------
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>chr3D_1032
GTG-----------------------------------------------------------------------------
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-----------------GTGCAGCAAAGGGCCCTTCAGCTTGATGAGGAGCATGATGGGACCCAAGTACAACGGCGA---
----GT-------ACCTCCACTCCGTCGTCAAGGAGCTGCTCGGCGACACGCGGGTCGGCGACACGCTCAACAACGTCGT
CATCCCAACCTTCGACATCAAACTCCTGCAGCCCACAATCTTCTCCACTTACAACGTATGTGATGTGTGAA---CAGATT
ACTAATAA-----------------------------------------------------ACATGTTGC-----TTGCA
CGGTTGCACCATGC----CGTCTGATTTA------TATATGGAACTTG--TA-----TGTAGGCCATGAAGGATAAATCG
AAAAACGCTCTTCTATCGGACGTCTGCATCAGCACGTCCGCTGCGCCGACCTACCTCCCCGGCCACCACTTCCGGACAGA
GCAAGAGGATGGCAAAGTCCGGGAATTCAACCTCATCGACGGTGGCGTTGCTGCAAACAATCCGGTGAGTTCGTCGTGCT
---AA-------CACGACACGCCACCTCAATTATAGTGAGACT--TGTTAACCT-AATTAATTGGATTATCATCTAATAG
TATAACAATTAACTAACTGTCATCCGGTTATGATGTTGATGTATGGAAACCGTTGACTATCATCCGGTTATGATATCGAT
GTATTGAACGTTCTCTGTCGTTTGACAACCGACGTGGATATATTACAGACCTTGCTGGCAATGACGGACGTAAGCAAGCA
GATCCTGATGGGAAACCCAGACTTCTTCCCCATCAAGCCCGCGGACTACGGCAAGTTCATGATCCTTTCGCTGGGCACCG
GTACCGCCAAGATCGAAGAGAAGTTCGACGCTGCCGAATGCAGCAAGTGGGGCCTTCTTGGGTGGCTCTACAACAGGGGC
GCCACGCCCATCATCGATAGCTTCAGCCAGGCCAGTGCTGACCTTGTGGACATCCACGCCTCTGTGCTCTTTCAGGCGCT
TCACTGCGAGAAGCGCTACCTCCGGATCCAAGACGACGAGCTCAAGGGTGAGACGGCCTCCGTCGACGTGTCAACGCCGG
AGAACCTCAACCGGCTCGTCGACGTTGGCAAGGCACTGCTCAAGAGGCAGGTGTGCAAAGTGAACGCTGAGACGGGGAAG
AATGAGCCCGACC---AACATAGGGGCACGAATGAGGAGGAGTTGGTCAATTTCGCACGCATGTTGTCGGAGGAGCGCAA
AGCCAGACTTCGGAAGGAGGGCGATGTTGAACTCTAGAGACTTGGGGCATTCCTTACTATTCGAATTTGATGAGACTGAC
GAGCACTACCTATATTATTTGTATAGATAGATATATTTGTGTACAT--ATTAATTTGT-----T-GATAGTCATTTATAT
CTGTTTATTCATGTAGATATTCATT-GTTTGTCCAATATTCCCTCTATAAACCACTGCGTATATGGCATGGATGTCCCAA
TTTGTGAATTTCTTTCATTGTCCATACATGTTGGGTAACTGTCACTTGGTTTTTTCTCAACCTTG---------------
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>chr3D_1032
GTG-----------------------------------------------------------------------------
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-----------------GTGCAGCAAAGGGCCCTTCAGCTTGATGAGGAGCATGATGGGACCCAAGTACAACGGCGA---
----GT-------ACCTCCACTCCGTCGTCAAGGAGCTGCTCGGCGACACGCGGGTCGGCGACACGCTCAACAACGTCGT
CATCCCAACCTTCGACATCAAACTCCTGCAGCCCACAATCTTCTCCACTTACAACGTATGTGATGTGTGAA---CAGATT
ACTAATAA-----------------------------------------------------ACATGTTGC-----TTGCA
CGGTTGCACCATGC----CGTCTGATTTA------TATATGGAACTTG--TA-----TGTAGGCCATGAAGGATAAATCG
AAAAACGCTCTTCTATCGGACGTCTGCATCAGCACGTCCGCTGCGCCGACCTACCTCCCCGGCCACCACTTCCGGACAGA
GCAAGAGGATGGCAAAGTCCGGGAATTCAACCTCATCGACGGTGGCGTTGCTGCAAACAATCCGGTGAGTTCGTCGTGCT
---AA-------CACGACACGCCACCTCAATTATAGTGAGACT--TGTTAACCT-AATTAATTGGATTATCATCTAATAG
TATAACAATTAACTAACTGTCATCCGGTTATGATGTTGATGTATGGAAACCGTTGACTATCATCCGGTTATGATATCGAT
GTATTGAACGTTCTCTGTCGTTTGACAACCGACGTGGATATATTACAGACCTTGCTGGCAATGACGGACGTAAGCAAGCA
GATCCTGATGGGAAACCCAGACTTCTTCCCCATCAAGCCCGCGGACTACGGCAAGTTCATGATCCTTTCGCTGGGCACCG
GTACCGCCAAGATCGAAGAGAAGTTCGACGCTGCCGAATGCAGCAAGTGGGGCCTTCTTGGGTGGCTCTACAACAGGGGC
GCCACGCCCATCATCGATAGCTTCAGCCAGGCCAGTGCTGACCTTGTGGACATCCACGCCTCTGTGCTCTTTCAGGCGCT
TCACTGCGAGAAGCGCTACCTCCGGATCCAAGACGACGAGCTCAAGGGTGAGACGGCCTCCGTCGACGTGTCAACGCCGG
AGAACCTCAACCGGCTCGTCGACGTTGGCAAGGCACTGCTCAAGAGGCAGGTGTGCAAAGTGAACGCTGAGACGGGGAAG
AATGAGCCCGACC---AACATAGGGGCACGAATGAGGAGGAGTTGGTCAATTTCGCACGCATGTTGTCGGAGGAGCGCAA
AGCCAGACTTCGGAAGGAGGGCGATGTTGAACTCTAGAGACTTGGGGCATTCCTTACTATTCGAATTTGATGAGACTGAC
GAGCACTACCTATATTATTTGTATAGATAGATATATTTGTGTACAT--ATTAATTTGT-----T-GATAGTCATTTATAT
CTGTTTATTCATGTAGATATTCATT-GTTTGTCCAATATTCCCTCTATAAACCACTGCGTATATGGCATGGATGTCCCAA
TTTGTGAATTTCTTTCATTGTCCATACATGTTGGGTAACTGTCACTTGGTTTTTTCTCAACCTTG---------------
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>chr3B_1032
GTG-----------------------------------------------------------------------------
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-----------------GTGCAGCAAAGGGCCCCTCGGCTTGATGAGGAGCATGATGGGACCCAAGTACAACGGCGA---
----GT-------ACCTCCACACGGTCGTCAAGAAGCTCCTTGGTGACACGCGGGTCGGCGATACGCTGAATAACGTCGT
CATTCCAACCTTCGACATCAAACTACTGCAGCCCACAATCTTCTCGACTTACAACCTATGTGATGTATCAACAACAGATT
AATAAGCATG---------------------------------------------------------TTGCTTAATTGCA
CGGTTTCACCATGCATGCCTGCTGATTTA------TATATGAAACTCC--TA-----TGTAGGCCATGAAGGATAAATCG
AAGAACGCTCTTCTATCCGACGTCTGCATCAGCACGTCCGCTGCGCCGACCTACCTCCCCGGCCACCACTTTCAGACAGA
GGGCGAGGACGGCACGCCCCGGCAGTTCAACCTCATCGACGGTGGCGTCGCTGCAAACAATCCGGTGAGTCCGTCGTGCT
---AA-------CACGACACGCCACCTCGATT--AGTGAGACG--TGCTAACCCAAATTAATTAGATTATCATCTAATAG
TATAACAATTAACT----GTCATCCGGTTATGATGTTGATGTATGGAAACCGTTGACTATCATCCGGTTATGATGTCGAT
GCATCGAAAGTTCTCTGTCGTTTGACAACCGACGTGGATATATTACAGACCTTGCTAGCAATGACGGACGTAAGCAAGCA
GATCCTGATGGGAAACCCCGACTTCTTCCCCATCAAGCCCGCGGACTATGGCAAGTTCATGATCCTTTCGCTGGGCACCG
GTACCGCCAAAATCGAAGAGAAGTTTCATGCTGCCGAGTGCAGCAAGTGGGGCCTCCTTGGGTAGCTCTACAACAGGGGC
GCGGCGCCCATCATCGACAGCTTCAGCCAGGCAAGTGCCGACCTTGTCGACATCCACGCCTCTGTGCTATTTCAGGCGCT
TCACTGCAAGAAACGCTACCTCCGGATCCAGGATGACGAGCTCAAGGGCGAGACGGCCTCCGTCGACGTGTCCACGCCAG
AGAACCTCAACCGGCTTGTCGATGTTGGCAAGGCCCTGCTCAAGAGGCAGGTGTGCAAGGTGAATGCTGAGACGGGCAAG
AACGAGCCCGACC---AAAATAGGGGCACGAACGAGGAGGAGCTGGTCATATTTGCACGCATGTTGTCGAAAGAGCGCAA
AGCCAGGCTTCAGAAGGAGGGCGATGTTGAATTCTAGAGACTTGGGGCATTGCTTACTATTGGAATTTGATGACACCGAC
GAGCACTA--TATTATTTGTGAATATGTATTT---TTTCTGTACAT--ATTCATTAATTTGTCT-GATTGTCG-TTATAT
CTATTGATTTGTGTAGATATTCATTTATCTGTCCAATATTCCTTGTATAAACGACTGCTTATATGGCATGTATATGCTAA
TTCATGAATTGTTTTCATCGTTCCTGCATGAT------------------------------------------------
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>chr7A_1660
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---------------T---ATTTGAAAAATTGGCATGGG----TACAGACGTTGTTAGCAATGACCGACGTGAGCAAGCA
GATCTTGATGGGAAACCCTGACTTCTTTCCCATCAAGCCGGTAGACTACGGCAAGTTCATGATCCTTTCATTGGGCACCG
GGGCGGCTAAGATTGAGGAGAAGTTTGATGTCGCCGAGTGCAGCAACTGGGGCGTCCTCGGGTGGCTATACAATAGGGGT
GCCACTCCCATCATCGACAGCTTCAGCCAGGCTAGCACCGACCTCGTCGACATCCATGCCTCTGTGCTTTTCCAGGCGCT
TCACTGTGAGAAGCCCTACCTCCGGATCCATGACGATGGGCTCAATGGCGAAACAGCCTCTGTCGATGTGTCCACGCCGG
AGAATCTCAACAGGCTCGTTGACATTGGCAAGTCGTTGCTGAAGAGGCAGGTGTGCAAGGTGAACGTCGAAACCGGCAAG
AACGAGCCTGACTCAAAGAATAGGGGCACCAATGAAGAGGAGCTGATCTATTTCGCACGCATGTTGTCGGAAGAGCGCAA
AGCCAGGCTT----------------------------------------------------------------------
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>chr4A_1660
TATTTT--------------------------------------------------------------------------
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--------------------------AAAATGGCATGGG----TACAGACGTTGTTGGCAATGACCGACGTGAGCAAGCA
AATCTTGATGGGAAACCCTGACTTCTTTCCTATCAAGCCGGCGGACTACGGCAAGTTCATGATCCTTTCATTGGGCACTG
GAGCGGCTAAGATCGAGGAGAAGTTTGACGTTGCCCAGTGCAGCAAGTGGGGCGTCCTCGGGTGGCTCTACAACAGGGGT
GCCACTCCCATCATCGACAGCTTCAGCCAGGCTAGCACCGACCTCGTCGACATCCATGCCTCTGTGCTTTTCCAGGCGCT
TCACTGCGAGAAGCGCTACCTCCGGATCCATGACGATGGGCTCAATGGTGAAACAGCCTCTGTCGACGTGTCCACGCCGG
AGAACCTCAACAGGCTCGTTGACATTGGCAAGTCGTTGCTGAAGAGGCAGGTGTGCAAGGTGAACGTCGAAACCGGCAAG
AACGAGCCTGACTCGAAGAATAGGGGCACCAACGAGGAGGAGCTGATCTATTTCGCACGAATGTTATCGGAAGAGCGCAA
AGCCAGGCTT----------------------------------------------------------------------
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>chr3B_1681
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-------------------------------------------TACAGACCCTGCTGGCAATGACGGATGTAAGCAAGCA
GATCCTGATGGGAAACCCGGACTTCTTCCCCATCAAGCCTGCAGACTATGGCAACTTCATGATCCTTTCACTGGGCACCG
GTACTGCCAAAATCGAAGAGAAGTTCGACGTTGCCGAGTGCAGCAAGTGGGGCCTCCTTGGGTGGCTCTAGAACAGGGGC
GCCACACCCATCATTGACAGCTTCAGCCAGGCCAGTGCCGACCTTGTCGACATCCACGCCTCTGTGCTCTTTCAGGTGCT
TCACTGCGAGAAGCGCTACCTCTGGATTCAAGACGACGAGCTCAAGGGAAGGACGGCCTCCGTCGACGTGTCAACGCCGG
AGAACCTCAACCGGCTCGTCGATGTTGGCAAGGCGCTGCTCAAGAGGCAGGTGTGCATGGTGAACGCCGAGACGAGCAAG
AACAAGCCCGACC---AAAACAGGGGCACGAATGAGGAGGAGTTGGTCAATTTCGCACACATGTTGTCCGAGGAGCGCAA
AGCCAGGCTTCGGAAGGGGG-TGATGTTGAATTCTAGAGACTTGGGTCATTCCTTACTATTCAAAACTGGTGAGACCGAT
GAGCACTA--TAATT-----------------------------------------------------------------
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>SNPs
-S----------------------SS-----------------S-----------------------S------------
-----------------------------------------S----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S-SS-S--S-S--SS------SSS--S----S--S-SSSSSSSSSSS-
SSSSSSSSSS-SSSSSSSS-SSSSSSSSSSSSSSSSSSS-----------------------------------------
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-------S----S---------------------S-S--------S--S---S---------S-----------------
---------------------------------------------------------------------S-S-----SSS
SSSS-----------------------------------------------------S----------------------
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--------------------------------------------------S-----------------------------
----------------------------------S---------------------------------------------
----------------------------------------S-------------------S-------------------
SSS--S---S-------------------------S---S---SS-----------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------------------------------------------------------------S-
-------------------------S------------------------------------------------------
----------------------------------S-----------------S---------------------------
---------S------------------------------S------------------------S-------S------
--------------------------------------------------------------------------------
----------S-S-------------------------------------------------------------------
-------------------------------------------------S--S-SS------------------------
---------------------------------------------------------------S--------------S-
-------------S-----S-------------S--------------------------S----SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_794
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------------------------------------------------------AAGATCATTGGGGAGGGGGA------
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>reverse_3431
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GACAAGGAAG
AAGCCCCTCC----------------------------------------------------------------------
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---------------------------------------------------------------------------
