>input_sequence_57541
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--------------------------------------------AGATAAAAAACTGGTGGTCTCTTTTTTTGTCGGAGC
GGGGAGAATTAAAA-TGAAGGTGCGGCAATTCGTGAATGTGGTGATGCAAAAGTATGGCAGAAGCAGCAGTTTGTATACG
GTGAGTCGCATCAAGGCGGAGGAGCAACTCTTCTACCGATCCACGGCGGAAGCACAAGCACCAGCAACATCACAGCAAAA
AGAGAATTTCAATATGGCGCTGCCATCATCAGCCGTGGTGCCGCCATGGATGGAGATCATGTCGCGGATGCCTCCGGCCA
TGCTCAGATTCGAGAGATCCGGCTCAGACGGCACGAAGCTCGATTTCTTGCCCTTCTACGAACGAAGCAGCGGTGGTTCT
AGCAAGATCCTCTGCCTGGATGCA--TCGGGTCGCTCCTTCTTGTATGACATTGACGCTGGCTCCTCCCAGCCAGTTCCA
TGCCTCAACAGCCCAAAGGGGGATAACCCCATCTGCTTCTCCATCACTAATCCCGAAGCCCTCGACCCCGAGCAAGCTGA
TGCCTTGTACGTTATGAACAAGTTCCCTGTGAGTCGCAATCCCTGCAACTTCGAGGTCCTCAAGTACAGCGACCCTTCCA
GTTGCGAGAAGATGGAAGGCTGGAATTGGCACCGGCTCCCATCACCGATCGACTATGTTGACGTTTCCCTTGTCAAGTGC
CATACGCTGCTTCACATTGACGGTGATCCAATTTTTCTTGCCTCATCTCCCAAAGGAAGTGCCATCGGCACCCACTGCTT
CAACACGGTCACCCGCAAGTGGTTTAAGGCTGGACGCTGGACGCTGCCCTTCTTTAACCGTGCCGAACATGTACTGGAGC
TCGGCAACCTTTGGTTTGGCATCTGCAATTCTAGTCCCAATCACTTCTGCGCAATTGACCTGTCATCTATTCACCCGGAC
AAGGCTCCGTCTTTGCTGTACAGTTGGCAAGACCTCGATCTGCCTGAGGATTGGGTGTTGCTAGATTGCAGCTTTGTGTA
CTTGGGAGCTGGGAGGTTTTGCATTACCAAAATCTTTGAGTTTGGAGAGGACGAAGACACGGGCCACCCAACTGAGATGG
GTGCTGTGATTTCTGGTGTGGAGGTGGTGCCCAGCGACAAAACACTGCAGATGGTCAAACACAAGTCCATATTCTACAAC
TTCGTCAGGGATAACATCGTGTGTGTCTTCTAAGGTGAACTTAGAAAGGAAGCAA-------------------------
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>chr2D_1_TraesCS2D01G522900
TTCTATGACTGTTGCATGATGAATGCCATCTAACATGATTACCCATGACTGATCCAATGCCTACGAGTTTTTCACATATT
GATCTCTGCTAAGTTACTTTTGCTGTTGCTGCTGTTACAATCACTACAAAATTGCTATTGTTACTTTTGCTACTGTTACC
GTTACTATCATACTACTTTGCTACTAAATACTTTGCTGGATATTAAGCCTTTCAGGTGTGGTTGAATTGATAACTCAACT
GCTAATATTACAAATATTCTTTGACTCCTCCTGTGTCGAATCAATAAATTTGGATTGAATACTCTACCCTCGAAAATTGT
TGCAATCCCCTATACTTGTGGGTTATCATGGACACGGTTGGGCAACAGTGCCTCACTGTCCTAAGGGCGACAGTGCTTGG
CCGTGTCCCACGAGCAATTGCCAGAGGGGAAGAGGGTTCCGGGTAGGGTACATGGACGACCACGACGACGTCGGCACGCC
CAAACAAGCCCGGGACAACCAGAGCTTGATGGGCCGGAAAACAGAACAAAAAATTGCAAAAAATACAAAATTTAATAAAA
CTGTAAAAAATCAATATAAAAAATATATTGTAAAATTTAAAATTCAAGAAAACTGTAAAAAAGGAAAAAAAACGGAACAG
AAACTGAAAAGGTAGAAAAGAAAAGTAAACGAGAAAACCGTAAAAAAAGGCTGAAACTTGAGATGGGCCGGACCAAGACG
CACGCCACACTGACTGAGATGGCCCGGCCAGCCCATGGTTTATCCAGCAGTCGATCTGTATAAGTGGTGGGGGAGGAAAG
GGTAAGACAGCAAGAAAACCTCGATTCCGCACCCAATCCCTGTTTGCAGCCGCCGCCGCCGCCGCCTCCGCCTCCGCCGG
CGGAATCGACTCTGTCTGCCGCAGGTATTGCTCTTCCCCGTTCATCTTTTGCTTTTCATGGAAGTGCCTGATCTCCT---
-GGGTATCATTCATCATCTAATTGTCTTTTATAACGTAGGAAGAAGATAAAAAACTGGTGGTCTCTTTTTTTGTCGGAGC
GGGGAGAATTAAAA-TGAAGGTGCGGCAATTCGTGAATGTGGTGATGCAAAAGTATGGCAGAAGCAGCAGTTTGTATACG
GTGAGTCGCATCAAGGCGGAGGAGCAACTCTTCTACCGATCCACGGCGGAAGCACAAGCACCAGCAACATCACAGCAAAA
AGAGAATTTCAATATGGCGCTGCCATCATCAGCCGTGGTGCCGCCATGGATGGAGATCATGTCGCGGATGCCTCCGGCCA
TGCTCAGATTCGAGAGATCCGGCTCAGACGGCACGAAGCTCGATTTCTTGCCCTTCTACGAACGAAGCAGCGGTGGTTCT
AGCAAGATCCTCTGCCTGGATGCA--TCGGGTCGCTCCTTCTTGTATGACATTGACGCTGGCTCCTCCCAGCCAGTTCCA
TGCCTCAACAGCCCAAAGGGGGATAACCCCATCTGCTTCTCCATCACTAATCCCGAAGCCCTCGACCCCGAGCAAGCTGA
TGCCTTGTACGTTATGAACAAGTTCCCTGTGAGTCGCAATCCCTGCAACTTCGAGGTCCTCAAGTACAGCGACCCTTCCA
GTTGCGAGAAGATGGAAGGCTGGAATTGGCACCGGCTCCCATCACCGATCGACTATGTTGACGTTTCCCTTGTCAAGTGC
CATACGCTGCTTCACATTGACGGTGATCCAATTTTTCTTGCCTCATCTCCCAAAGGAAGTGCCATCGGCACCCACTGCTT
CAACACGGTCACCCGCAAGTGGTTTAAGGCTGGACGCTGGACGCTGCCCTTCTTTAACCGTGCCGAACATGTACTGGAGC
TCGGCAACCTTTGGTTTGGCATCTGCAATTCTAGTCCCAATCACTTCTGCGCAATTGACCTGTCATCTATTCACCCGGAC
AAGGCTCCGTCTTTGCTGTACAGTTGGCAAGACCTCGATCTGCCTGAGGATTGGGTGTTGCTAGATTGCAGCTTTGTGTA
CTTGGGAGCTGGGAGGTTTTGCATTACCAAAATCTTTGAGTTTGGAGAGGACGAAGACACGGGCCACCCAACTGAGATGG
GTGCTGTGATTTCTGGTGTGGAGGTGGTGCCCAGCGACAAAACACTGCAGATGGTCAAACACAAGTCCATATTCTACAAC
TTCGTCAGGGATAACATCGTGTGTGTCTTCTAAGGTGAACTTAGAAAGGAAGCAAATAAACCAAGGGAGTAGCAGCACTT
CCTGGAGGAATGTAACTGTCTGTTCTTTCCCTTTGGAACTGTCTGTTCTTTCCCATTTCATTAC--------TATTTAGA
GGTTCCAGCAGCAGCAGTGAAAGTAACATGGCTGTAACTTATGCTCAGTTCCTTAGATATGTTATGTCATTCCATTTACT
TCTTGCCGCTTACTATTGGTAATCACATATTTTCTTAGCTGCTTCCACTAGATGAATAAACTGATGCATAAAGCACTGCT
TGGTTCACAAGATT-GGGCTGAATACCCTGGTAAAATACAGACCTGGAAAAAAGGTCTGATCTTTGTAAAAGCATTTGGT
TGGCCGTTTTCCACCAGTTTTTGCTGTGTTTGCACTGATTTTTTTTAACTAACTCTCCCAGAAATATTACGCACCTTAGG
AGGCCCCCATTAAAATTTGAAGAAGAGAAACAAGAGGGCGAAAGAAGTTAAGCGATGGGGGAGCTCGACCGCTGTCATTG
TTGTCCCCACCGTGGGCCACATGGTGATCAGAGACGGACGTAAGGTTTACACTGCGGCCCACTTCCTTCCCCAATCTCCA
CTCTCCGGGGACTTAAGCCACCTCCGAGCGTCGGCCCCTCCACCGCGGGCGCCAGGTCATGGCCAGCTCGTTTGGATGCT
TGCCCCGACAACCCTCTTCTTCTGGTTGATGTGGGGCTTCTCTCCAAGGTAATAGTTCACCAAAGTATCTTGGGTTCTTG
GATTAGTTCACCAGCGATGTCCCTCTGGTTAATTAGCCTTTCAACATGGTTGTTTGCCTCCTCTTGTGACGTTGTGCAGA
ATGGAATTCACCAGATTGTTTTGCAAAGAGATTTAGGTTCTTCAATTTCGTCAACTCAAACCAAAATCATGGATGCTTGC
AATTTCTGTTGTTTGAGTTGGTAGGATGATTTGAGTATTTAACTCGACCCAATGTACGGATGGTTCGTCGTTGTGATTGA
GCTGTCTAGTGGCATGCAGAAATT
>chr2B_897
TGCCAGCGGAATTG------------------------------------------------------------------
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-----------------------------GCTCTTCCCCGTTCGACGTTCGTCTTCTGCTGAAGTGGTTGTTCTCTAACT
AGGGTATCATTCATCATCTAACTGTGTTTTATAACGTAGGAACAATATC-AAAACTGGTGGTCTCTTTTTT-GTAGGAGC
GGGGAGAATTGAAAATGAAGGCGCGGCAATTCGTGAATGTGGTGATGCAAAAGTATGGCAGAAGCAGCAGCTGGTATACG
ATGAGTCGCATCAAGGCCGGGGAGCAGCTCTTCTACGGATCCACGGCGGAAGCACGAGCAGCAGCAGCGTCACTGCAAAA
AGGGAAATTCCATATGGCGCTGCCATCATCAGCCGTGCTGCCCGCATGGATGGAGATCATGCCGCGGATGCCTCCGGCCA
CGCTCAGGTTCGAGAGATCCATCTCAGACGGAACGAAGCTCGATTTCTTGCCCTTCTACGAACGAGGCGGCGGTGGTGCT
AGCAAGATCCTCTGCGTGGACGCCGCGCGGGTCGCTGCTTCATACATGACGTCGACGCGCGGG--TCCCATCCAGTTCCA
TCCCTAAGCAGTTCCAAGGAGGATAACCCCATCTGCTTCTCCGTCACCAGTCCCGACGCCCTCGACCCCGAGCAAGCCGA
TGCCTTGTACGTGATGAAGCAGTTCCCTGTGAGTCGCAATCCCTCCAACTTCGAGGTCCTCAAGTACAGCGACCCTTCCA
GTTGCATGAAGGTGGAAGGCTGGAATTGGCACTGGCTCCAACCACCGATGGCCTATGTCGACGTTTCC------------
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>chr2A_1049
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------------AA-TGAAGTTGCGGCAATTCGTGAATGTGGTGATGCAAAAGTATGGCAGAAGCAGCAACCTGTATACG
ATGAGTCGCATCAAGGCCGGGGAGCAACTCTTCTACGGATCCACGGCGGAAGCTCGAGCAGCAGCAACGTCACAGCAAAA
AGAGAAATTCCACATGGCGCTGCCATCATCCGCCGTGGTGCCCGCATGGATGGAGATCATGTCGCGCATGCCCCCGGCCA
CGCTCAGGTTCGAGAGATCCATCTCAGACGGCACAAAGCTCGATTTCTTGCCCTTCTACGAACGAGGCGGCAACGGTGCT
AGCAAGATCCTCTGCGTGGACGCG--GCGGGTCGCTGCTTCATACATGCTATTGACTCCGGCTCCTCCCAGCCAGTTCCA
TTCCTAAGTAGTTCCAAGGAGGATAACCCCATCTGCTTCTCCATCCCTAGTCCCGACGCCCCCAACCCCGAGCAATCTGA
TGCCTTGTACGTTATGAAGCAGCTCCCTGTGAGTCGCAATCCCTCCAACTTCGAGGTCCTCAAGTACAGCGACCCTTCCA
GTTGCGAGAAGATGGAAGGCTGGAATTGGCACCGGCTCCCATCACCGATCGACTATGTTGACGTTTCCCTTGTCAAGAGC
CATACGCTGCTTCACATTGACGGTGATCCAATTTTTCTTGTCTCATCTCCCGAAGGAAGTGCCATCGGCACCCACTGCTT
CAACACGGTCACCCGCAAGTGGTTTAAGGCTGGACGCTGGACGCTGCCCTTCTTTAACCGTGCTGAGCATGTACTGGAGC
TCGGCAACCTTTGGTTTGGCATCTGCAATTCTAGTCCCAATCACTTCTGCGCAATTGACCTGTCATCTATTCACCCGGAC
AAGGCTCCGTCTTTGCTGTACAATTGGCAAGACCTCGATCTGCCTGAGGACTGGGTGTTGCTAGATTGCAGCTTTGTGTA
CTTGGGAGCTGGGAGGTTTTGCATTACCAAAATCTTTGAGTTTGGAGAGGACGAAGACACGGGCCACCCAACTGAGATGG
GTGCTGTGATTTCTGGTGTGGAGGTGGTGCCCAGCGACAAAACACTGCAGATGGTCAAACACAAGTCCATATTCTACAAC
TTCGTCAGGGATAACATCGTGTGTGTCTTCTAAGGTGAACTTAGAAAGGAAGCAAATAAACCAAGGGAGTAGCAGCACTT
CCTGGAGGAATGTAACTGTCTGTTCTTTCCCTTTCGAACTGTCTGTTCTTTCCCTTTTCATTACTATTTACTTATTTAGA
GGTTCCAGCAGCAGCAGTGAAAGTAACATCGCTGTAACTTATGCTCAGTTTCTTAGATATGTTATGTCATTCCATTTACT
TCTTGCAGCTTACTATTGGTAATCACCTATTTTCTTAGCTGCTTCCACTAGATGAATAAGCTGATGCATAAAGCACTGCT
TGGTTCACCAGATTGGGGCTGAATACCCTGGTAAAATACAGACCTGGCAAAAAGGCCTCATCTTTGTAAAAGCATTTGGT
TGGCCGTTTTCCACCAGTTTTTGCTGTGTTTGCACTGATTT--TTTAACTAACTCTCCCAGAAATATTATGCACCTTAGG
AGGAATCCATTAAAGTTTGAAGAAGAGAAACAAGAGGGCGAAAGAAGTTAAGCGATGGGGGAGCTCGACCGCTGTCATTG
TCATCCCCACCGTGGGCCACATGGTGATCAGAGACGGACGTTAGGTTTCCACTGCGGCCCACTTCCTTCCCCAGTCTCCA
CTCTCCGGGGACTTAAGCCACCTCCGAGCGTCGGCCCCTCCACCGCGGACGCCAGGTCATGGCCAGCTCGTTTGGATGCT
TGCCCCGACAACCCTCTTCTTCTGGTTGATGTGGGGCTTCTCTCCAAGGTAATAGTTCACCAAAGTATCTTGGGTTCTTG
GATTAGTTCACCAGCGATGTCCCTCTGGTTAATTAGCTTTTCAACACGGTTGTTTGCCTC---TTGTGACGTTGTGCAGA
ATGGAATTCACCAGATTGTTTTGCAAAGAGATTTAGGTTCTTCAATTTCGTCAACTCAAACCAAAATCATGGATGCTTGC
AATTTCTGTTGTTTGAGTTGGTAGGATGATTTGAGTACTTAACTCAACCCAATGTACGGATGGTTTGTCGTTGTGATTGA
GCTGTCTAGTGGCATGCAGA----
>SNPs
-S-S-SSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SS-S--S-SS--SSSSS------SS--S----SS---
---------------------S---S----------------S--S--SS---------------------S--S-----
----------S-----------------------------------------------------------S---------
S----------------S-S----------------S------------------S----S-------S-----------
------S---S-------------------------------SS------------------------------------
S------S------------SS-------------------------------------------S--S--------S--
---------------S----S--S--S---------S----S-SS-------------S---------------------
-S---S-S---SS-S----S-----------------------------S------S-----------------------
------------------SS------------------------S-----------------------------------
-----------------------------------------------------------------------------S--
----------------------------------------S----------S----------------------------
---------------------------------------------------------------S--S-------------
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----------------------S---------------------------S-----------------------------
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----------------------------------S-------------------S-------------------------
-----------------------------S--------------------S-----------------------------
------S-------------------S--------------------------------S--------------------
--------S--------------------------------------S-------S--S---------------------
-----------------------------------------SS--------------------------S----------
---SSS--------S-----------------------------------------------------------------
-SS--------------------------------------S------S------------------------S------
------------------------------------------------S-------------------------------
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-------------------------------------S--------S-------------SSS-----------------
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-------------------------------------S-------S-------------------S--------------
--------------------SSSS
>forward_712
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----------------------------------------------------GAAACTTGAGATGGGCCGGA--------
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>reverse_1539
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------------------CAAGTTCCCTGTGAGTCGCA------------------------------------------
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>forward_740
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CACGCCACACTGACTGAGAT------------------------------------------------------------
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>reverse_1827
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------------------------------------------------------------------ACATGTACTGGAGC
TCGGCA--------------------------------------------------------------------------
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>forward_1349
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-------------------------------------------------GCCCTTCTACGAACGAAGCA-----------
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>reverse_3007
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----------------------------------------------TGGTTGTTTGCCTCCTCTTGT-------------
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