>input_sequence_57535
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------------------------------------------------------------------------ATGACGGT
TAAGCACCCCAATATAGTGCAATGTGTAGGCTACTGCTATGAAACTCTGAATGAGGTTGCATCATACAATGGGAAAAAGG
TATTTGCAGAGAAGGCGGAAATGCTACTTTGCTTAGAGTATCTCCCCACCGGAAGCCTCAATGAGTATCTATCTGGTACG
ACATTTAATATGGCATGTTGTTTATCGATGTCATCTTCATTTGATACTGTAGACTAGGAAGTTTGGGCTTTGTTTTCCAC
ATGTACCAAGTATTACAACAGATCAATATACTCAAACAAGGACATATATACTATACAAATTTGTAGCACTTCCATACATT
GTCTACAGAACATGTAGTAGAATTTCTAGGTAAGATATGTCACAATGTTCTTCTTGGGTTACAAATGCAGATGAATCTTC
TGGACTTAATTGGAGCACACGCTACAGAATAATCGAAGGGATTTGCTATGGTTTATGTCACCTTCACGGGCAAAAAGATA
ACCCCATTATTCACTTGGACCTTAAACCTACAAACATATTGCTCAGCGACGGTATGATAGCAAAAATTGCAGACTTCGGT
TTGTCAATGTTGCTTGTACAACCAGGCACTATTATAGCGTCGTCTTCTCTTGGAACACCGTGAGTTGTTGCCACTTTTTC
ATACATTATTCTTCAAGTCATAAGCAAGATGTGCTTTTTATACTGTCTATTTAACACTATCAACTTCTATTCATGCTGTC
AATTCAGTGGTTACATTGCACCAGAGTTTGTGAATGGACGTAAAATTTCGCT------CAAGTCGGACATATTTAGCTTG
GGCGTAATAATCATCGAGATAATAACGGGAGGCAAGGACTACCCCCTTGATGTTACTAAACCATCATCTTCAAACACATT
TGTTGACGATGTGAGGAAATTTTGGTCCA-CATTTCAAAATAGATGTCCCTTTGTCGACATTGCGCTTACTCTTCACGCT
AACAGTCTAGGTATTTTGTCTTATTTCACAGGTTCTTTGCAAATGGAAAAAC------AGAAGATCACGGAGATATGGAA
CCCTAGATGTAAATTGCCAAGAAGAAATAAAAAGATGCATTCAGATAGGTCTAATATGTCTGAACCCTGATCGCAATCAA
AGGCCTGCAATAAGGAACATCATCAGGATGCTTCAAGGAACAGAAAGTATTGATTGCGGCATTAGCAACCATGCAACATC
ATCGACAGGCTAG-------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G043100
CATCACGGTGAGTTTTCTGCTTTAACTACGGCAGGCAATTGCTGCCTTCATGGCTGTGTATTATTACGTCCCGTCCGTCC
CCAAATAGCTGGCAGATAAATTCAGTCAAAAGTCAACGAGTTCTAAGTTTGACCAAGGATATATACGAAAATATTAAAAT
AGACAATATCTACTTTTTTTGCGGGAAAAGACAATATCAAATCAATATC-AATATGTTCACCATTAGATATGTTTTCATA
ATCTGTTTATTCAATATTGTTGTTGTTGGTATTTGTTTTCTATATATTTGGTCAAACTCGGAAAGAATTGACCTTTTTTA
CTGGATTTGTATGTCATGTATTTGGGGAC-----------------------GCTGAGCTCCCGGGCTTCATTTCATCCT
CGGAGTTCGTAAATGACCGTGCTACATACGATGAATAAGGTCTATTTTTTCCTGTAAAACAAAAAAGAAAGAGGAGAGGG
AGAGCTGCCAGCTGCGTTGTGAATCCATCACAAGCGCCGGCTGATTTTGATAATCCGTTTGAGCCTCGTGAGTTAGTGGC
GTGTTTGTTTTTCAACATGGAGTTAGTGGTGTTTGGTATGCTTGGGACCCACACGGGAAACAAACAGAGAAGAATGACTC
GGAAGTGGCAGCGGCGGTTAAACTAGACAAACACACAACCCCTTTCCCCTCTCTGCTCCTGCTGCTCTGTCGTTCGTCGT
CCCGGCCGGCGTGGTTCGACC-------------CGCCCGCTCTAGTGGAGTGACTGGTGAGCAGACCCAACTTGCTCCA
TCAATTTGTTCTGGGATTTCTATGTGTAGCGCGGATTCGTTTGCTCCTTTTGCTTTGCTTGGTGCAGATGTGATTTATCT
GTCTTTTCGCTGCAAATAGCCCTTCATTCACTTCATCCGATCGATCCAGTCTGTAGCGGATCTGTTGATTCGCAGTTGCT
TTTGTAGAGGCACAACCACAACTAATA-----------------------------------------------------
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----------------------------------------------GCAATCAGTTCCTT--------------------
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--------------------------------------------------------AGATCCGCACAACTAATCAGGCCC
CTTCCTTC------------------------------------------------------------------------
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--------------------------------------------------------------------TCTTATGACGGT
TAAGCACCCCAATATAGTGCAATGTGTAGGCTACTGCTATGAAACTCTGAATGAGGTTGCATCATACAATGGGAAAAAGG
TATTTGCAGAGAAGGCGGAAATGCTACTTTGCTTAGAGTATCTCCCCACCGGAAGCCTCAATGAGTATCTATCTGGTACG
ACATTTAATATGGCATGTTGTTTATCGATGTCATCTTCATTTGATACTGTAGACTAGGAAGTTTGGGCTTTGTTTTCCAC
ATGTACCAAGTATTACAACAGATCAATATACTCAAACAAGGACATATATACTATACAAATTTGTAGCACTTCCATACATT
GTCTACAGAACATGTAGTAGAATTTCTAGGTAAGATATGTCACAATGTTCTTCTTGGGTTACAAATGCAGATGAATCTTC
TGGACTTAATTGGAGCACACGCTACAGAATAATCGAAGGGATTTGCTATGGTTTATGTCACCTTCACGGGCAAAAAGATA
ACCCCATTATTCACTTGGACCTTAAACCTACAAACATATTGCTCAGCGACGGTATGATAGCAAAAATTGCAGACTTCGGT
TTGTCAATGTTGCTTGTACAACCAGGCACTATTATAGCGTCGTCTTCTCTTGGAACACCGTGAGTTGTTGCCACTTTTTC
ATACATTATTCTTCAAGTCATAAGCAAGATGTGCTTTTTATACTGTCTATTTAACACTATCAACTTCTATTCATGCTGTC
AATTCAGTGGTTACATTGCACCAGAGTTTGTGAATGGACGTAAAATTTCGCT------CAAGTCGGACATATTTAGCTTG
GGCGTAATAATCATCGAGATAATAACGGGAGGCAAGGACTACCCCCTTGATGTTACTAAACCATCATCTTCAAACACATT
TGTTGACGATGTGAGGAAATTTTGGTCCA-CATTTCAAAATAGATGTCCCTTTGTCGACATTGCGCTTACTCTTCACGCT
AACAGTCTAGGTATTTTGTCTTATTTCACAGGTTCTTTGCAAATGGAAAAAC------AGAAGATCACGGAGATATGGAA
CCCTAGATGTAAATTGCCAAGAAGAAATAAAAAGATGCATTCAGATAGGTCTAATATGTCTGAACCCTGATCGCAATCAA
AGGCCTGCAATAAGGAACATCATCAGGATGCTTCAAGGAACAGAAAGTATTGATTGCGGCATTAGCAACCATGCAACATC
ATCGACAGGCTAGGCATGCACCGGAACCGACGACCTATCTCGTGTCGATCGACGTCACCGTGAGACCCCTCATCAGCAGC
TTCGACCTCATCCACTGTCAGGGTGAAGGTAGGGCCCTCATCAGCAGCTCCGGTATAGGTAGAGGGCTGAAGGCGCCAGG
ACAGACGTCTGGTCGGTTTGCGAGTATTACTAACTGATTTGCTTGATGTTTGTATGTTGCTGTAATAACTTGCAATCGGG
CTGCATTAATTATTCGTTACTACCTTCATAGTGTAAAGTAACATAGTAGTAGTGTCATAGATGCAAGCTTTTAAATAGTG
GATAACGGACTGGTTGCCGATTATGGTCCGTGTAGCGGAATGCGGATAGCAGGCGATATTGCGGGCGCTATGTCCACATA
GCCAATTTTAAAAAAAACACTCATAAATTTGAGATTGCTGTGTATATTTCTAGGCCACTGACAAAAAATATGACGCTTAA
TTTGAGAAATCATCATTTATATAAGAATATAAACTATAATTGAACAATATTTGGTCGTGCAACCATGCCATCAAGACACA
TTTATCAAAATAGATTACACAACAAAACAACAAGGACTTATATAGCGGGCGATATTGCGGATAGCGGACGATATAGCGGT
CTAATAAGTGATATTGCGCCTGCATCATGACAACACGCTATTTTCTAACGCAACCTTAAATTAATAGCGGCAGGGTGACG
CTACCGCTATTGTGGCCGAAATAGCGGAGGTAGCGGACGCTATTTAAAAGCTTGCATAGATGGTCTCATTTATTAGCTTG
TAGACTTATCTTGTCTTTGGAAGCGCTATGTTACAGTAATATATTATGTTATGCCCGGTGTGACAAGGGTGGCAGATTTG
TTAACTCCCGACGGCCGTTCATGGGATGCAGCAAAGGTGGATGCCATGTTTAGTCCGACTAATGCAGCGGATATCAAACA
CATCGCTATTGGGGGTCCGGAAGAACAGGATTACATGGCCTGGAACTACACAA
>chr2D_1
CATCACGGTGAGTCTTCTGCTTTAACTCTGGCAGGCAAATGCTACCTTCATGGCTGTGTATTATTACGTTCCGTCCGTCC
CCAAATAGCTGGCAGATAAATTCAGTCAAAAGTCAATGATTTCTAAGTTTGACCAAGGATATATACGAAAATATTAAAAT
----------------------------AGACAATATCAAATCAATATTTAATATATTCATCATTAGATATATTTCCATA
ATCTATTTAT-CAATATTATTTTTGTTGATACTTTCTTCTATATA--TTTGTCAAACTCAGAAAGGATTGACCTTTTGAG
-TGGATTTGTATGCAATGTATTTGGGGGCGGAGAGAGTATGCAGTTTCGGATGCTGAGCTCCCGGACTTCATTTCATCCT
CAGAATTTGTAAATGCCCGTGCTACATATGATGAATAAAGTCTATTTTTTCCCTGTAATAAAAAAAAAAGAGCGAGAGGG
AGAGCTGC------------------------------------------------------------------------
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------------------TAAACTAGATAAACACACAACCTCTTTCCCCTCTCTGCTCCAGCTGCTCT---GTTTGTCGT
CCCGGCCGACGTGGTTTGACCTGTCTCCTCCGTCCGCCTGCTCTACTGG----ACTGGTGAGCAGACCCAATTTGCTCTA
TTAATTTGTTCTGCGATTTCCCCGTCTAGCGCGGATTCGTTTGCTCCTTTTGCTTTGCTTGGTGCATATGTGATTTGAGT
TAATTACACTTATGATGCACAAAAGATACACAAACTTGCACTCGATATACATATTCATACATAAACTTGAAAGAAATGGC
ATAAATCGGTCCTACAATTTGTGTTTTGGGTATGTTTGACTACATTTCCGTCTCACTCCCCGTTCCTATAACTCAAGAAC
CATGTTTTTTTAGAAGGAAAACGCTAGAAGCGTATGGCTTTAAATTAATGAAGCCCACAACATAGGCAGCGTACCAACCA
CGTCCAAACCTTACACACATCACAGAAGGGCTCAGGCCACACATACGCAGGAAGTTATAGGGTTCACGGCCAAAAGAGCG
CGAGCATAAGTTACATGGCTCGAAGGCCAAACACTGAGCACGCAGGCTCGCGCACGGAACAAAAGGGCCACTCCAAATCA
AGAAGTGGCGGCTGGCTCCCTAGCCATCACATACACCTGGCGGAGACGGTCTTGAGCATGTTGCATCCTCTCAGTATCCT
TGCGCCTCGCCAACGGACTCCACTGCTGCAGAAATAGGTTGCATTTATAGATGGTATTAACCGGGTGAGTCGGGAAGATC
CCCTCAATAGCTAGTTTGTTCCTAGTTAACCAAAGCGTCCAGAACAGTGCCCCAACACAGCTCCACATCACACGTTTACT
GCTCCCCTGGACAGAGTCAAGCATAGCCACAAGCTCGTTGGTTGACCTCGGGTCCCAGGACACCTCGGCCGCGGTCCGGA
CCGCGCTCCAGGCGAACCTGGCCAGCGGGCATCGGAAGAAGACGTGGTTTGCGTCCTCGACCACGTTACAGACCGCGCAA
GTGCCGGTCGACGACCCCTGCCTTTTCGCCACGTTTTCGGAAGTGGGCAATCTGTTCCTGAACAGCTGCCATAAAAACAC
TTTGATTTTCAGCGGGAGGCGCGCCTTCCATAGGCCCTTCACCACCGGCTGGGCTGGCCCCTGGCAAAGCTTGTGGTACA
GAGATTTGACCGAAAACTTGCCGGACACGGTGAGCGCCCAAGTCACCGAGTCAGCCGCTGTGGACAGCGAGATCAACCTT
TTGAGGAACCATGTCTATGCAGTACTTCAGTTCGGGGTCAGATCAGCAAAGGACTTGGGTTAGTCTTGTGACCTCGACCC
CCGGGATGACAAGAGTAACCCAAGTCCCTATCTTGAGCTTGCCTTTAACGATCAGCAGTTCCGGACAACTACCAAGGAGA
ATGATCTGAACCCAGTGTGGAACGAGCACTTCTACTTCAGGGTGTCTGATCCAACTTATCCACCTAAACTTTCCCTTAAA
GCAACTGTGAGGTGCGCGGAATGATGTCGCATGAATACTGACGGAATCTGTTCCTGGCATGTTTGTCATTGGCACCGTCG
GTATTCATGGGACATCATTCGTGCCCCTCCCAGATTCCGTCGTCAAGGGATATACTTTAAAGAAACTAGCACGTTCCTTA
CTTTTACCTCCCACGCCAGTACGATCACTATTTTTGAGACAGGAAGTATTGCATATGAAAGTATTTGTCGCTGATGAGGC
CTCCATCCGAGCTTCCGACCCTCTTCTGGAGATGGATAGGGTAATATCGTCTCTAGACTTTCATGTTTCAAATAACCATG
AAAGGAAGCCAAATGATCTGAGTTCAAGGCCATACTATGTACCATTGCAATGCTTGAGAGATATCACAAATAATTTCTCT
GAGAAATTGGAAAGGGTGGTTTTGGTGTTGTATATAAGGTAAGGTTACAATATACTCTTCTCTCCTTGTCTTTCTTTTCC
GTAACGTACGATCATATTGATAGGATGGTTTTAAACAGGGAGTGCTGGAAAATGGTGAAATGATTGCTGTGAAGAAGATT
GTATTACAACCGGCCAATAGTAAGTTACGACAACGCGTGGAAATGCAGTTTGAGAAGGAGGTTTGTCATCTTATGACGGT
TAAGCACCCCAATATAGTGCAATGTGTAGGCTACTGCTATGAAACACTGAAAGAGGTTGCACCATACAATGGGAAAATGG
TATTTGCAGAGAAGTCGGAAATGCTACTTTGCTTAGAGTATCTCCCCACCGGAAGCCTCAGTGAGTATCTATCTGGTACG
ACATTTAATATGGCATGTTGTTTATCGATTTCATCTTCATTTGATACTGTAGACTAGGAAGTTTGGGCTTTGTTTTCCAC
ATGTA---------ACAACAGATCAATATACTCAAACAAGGATATATCG----TACAAATTTGTAGTACTTTCATACATT
ATCTACAGAACATGTAGTCGAATTTCTAGGTAAGATATGTCAAAATGTTCTTCTTGGGTTACAAATGCAGATGAATCTTG
TGGACTTAATTGGAGCACACGCTACAAAATAATCAAAGGGACTTGCTATGGTTTATGTCACCTTCACGGGCAAAAAGATA
CCCCCATTATTCACTTGGACCTTAAACCTACAAACATATTGCTCAGCGACGGTATGATAGCAAAAATTGCAGACTTCGGT
TTGTCAAGGTTGCTTGAACAACCAGGCACTATTATAACGTCATCTCGTTTTGGAACACCGTGAGTTGTTGCCACTTTTTA
ATCCATTATTCCTTAAGTTATAAGCAAGATGTGTTTTCTATACTGTCTATTTAACACTACCAAATTCTATTTGTGTTGTT
AATTCAGTGGTTACATGGCACCTGAGTTCTTTGAGGAAAGTGGTCCAGCATTGTCGACCAAGTCGGACATATTTAGCTTG
GGCGTAATAATCATCGAGATAATAACAGGACGTCGGAAATACCCCCGTGATGTTACTGAACCATCATCTTCAAATGAATT
TGTCGAGATGGTGAGGAATTGTTTGTTTTGCATTTCAAAATGGACGTCCCTTTGTTGACATTGCGTTTACCCTTCACAGT
AACAGTCTAGGTATTTTGTCTGATTTCACAGGTTCTCTGCAACTAGAAAAACAAGGTGAGAAGATCACGGAGATATGGAA
CCCTAGGTATAATTTGCCAAGAAGAAATAAAAAGATGCATTCAGATAGGCCTAATATGTCAGAACCCTGATCGCAAGCAA
AGGCCTGCAATAAGGAACATTATCAGTATGCTTCAAGGAACAGAAAGTATTTATTGCGACATTAACAACCATGCAACATC
ATCGGCAGGCTAGGCATGCACCGGAACCGACCACCTATCTCATGTCGA----CGTCGCCGCGAGACCCCTCATTAGCAGC
TCCGACCTCATCCATGGTCGAGATATAGGTAGGGCCCTCATCAACAGCTCCGGTATAGGTAGAGGGCTGAAG--------
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>SNPs
-------------S-------------SS---------S----S-------------------------S----------
------------------------------------S--S----------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S------S----S----------S---S----
----S-----S-------S--S------S--S--SS--SSSSSSSSS--S---------S-----S-----------SSS
S------------SS------------S-------------------------------------S--------------
-S--S--S-------S------------S---------S-------------SSSS--SS------S--SSSS-------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------S------------S------------------S--------SSS---S-----
--------S-------S---------------------S------S---SSSS------------------S------S-
-S-----------S------SSS--S----------------------------------------S---------SSS-
SSS--SSSSS-SSS-SSSS-SSSSS--S---SSSS-SSS-SSSSSSSSSSS-S-SSSSSSSSSSSSSSSSSSS-SS--SS
S-SSSSSS-S-SS-SSSSSSSSSSS-S-----------------------------------------------------
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----------------------------------------------------S------S--------------------
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----------------------------------------------------------S----S-------SSS---SSS
S-SSSS-S------------------------------------------------------------------------
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---------------------------------------------S-----S---------S---------------S--
--------------S---------------------------------------------S-------------------
-----------------------------S--------------------------------------------------
-----SSSSSSSSS----------------------------S----SSSSSS-------------S----S--------
S-----------------S-----------------------S------------------------------------S
--------------------------S-------S------S--------------------------------------
S-------------------------------------------------------------------------------
-------S--------S-------------------S----S---SS-S------------------------------S
--S--------S-S----S--------------S---S---------------------S---S-------SS--S---S
----------------S-----S-----SS-SS-S-S-S--SSSSSSS-SS-----------------------------
--------------------------S---S-SSS-S-S-------S----------S----------------SSS---
---S--SSSS--------S-S--S--SSS------------S--S----------S---------S----S------SS-
---------------------S--------------S-----S-S-----------------------------------
------S-S---S------------------------------------S----------S---------------S---
--------------------S-----S------------------------S------S-----S---------------
----S--------------------------S---------S------SSSS----S---S------------S------
-S------------SS---SS-S-SS-----------------S----------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_612
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--------------------------------TTGGTATGCTTGGGACCCAC----------------------------
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>reverse_4160
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-------------------------------------------------------------------------------G
ACAGACGTCTGGTCGGTTT-------------------------------------------------------------
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