>input_sequence_57504
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--------------------------------------------ATCCGGCCCC-----GTCCACTCCACCAAACCACCG
GATCACCCGAGCCCATGGCCGGCCCCTCACCGTCGCCGTCCGCCAGCAGCCGCCGCCTGTCGGAGCTCCTGGAGGAGGAG
CAAGAGCCGTTCTCCCTTCACCTCTACCTCCTCGAGAAGGGCTGCTCCCCCACCACCCTGGACGCGGCCGGAGGCTGCGG
CGTTGCCTCCTTACCTTGCTGGCCGAGGAGCAGAGGCACCTCCCCGGCGCCGAGGCGGGTGACGGCCAGCAAGAGAACGC
CCGCCACCGCCAGCGGCCTCCTCTCCAAGTTCCTCCGCGGCTCGGCGGCGCCTGCGTCCACGAAAAGAAAGAAGAGGCTG
CGGTCGGCCGCCATTGGCCCGTGCTCCGTCGAAGGCGAGAAGACGGCGAGCAAAAGAAAGAACGCCGTCGAGGCACACGG
GGATGAAGCAGAGGACGACGTGGGAGGAAGCT------ACGACGACGACGACTCGTCGAAGCAGCTGAGCCCCGTGTCCG
TCTTGGAGCGCCCGCCATTCGAGAAGCCACCGCGGGCGTACGC------CGAGAGTAAGCAAGCACGCAGCCCCCATATC
TCTTCATCCGCGCCATTGGTCGTCGATCATGGACTA--------AGCTCACGCAGCGATAGTTGCGACCATTGCAGAAGC
CATCGTCGTCTTGAGGGAGCTCCTGGACGCGGCACGCAAGCCCGCATTGCTCCAGCGGAAAGTTGCCACAGAAAGCAGCA
AGGCCGGCGATGTCCTCATGGAGACTTCAACAACGACGACGACGACGATGGCGCA---CCCCGCACCGGCGCCCACGAGG
ACCGACCGTGCTGCCAGCGCTGCTGCACATTTGGAGGAGATGTTTGAGGCCAGGGGGCACGACCTCGTACCGTTGGACAT
GCCCGGCGAGAGAGGGGATGCCCGGCTGGGGCGGTGGGACGTCGGCGCCGAGCTAGCGGTTGCGGTGCTGGAAGAGCTGA
CGGAGGAGGTGGTGGCGGAGCTGATGGGGATGGTCCACCATGATGATGCCAATGCCATCGACGTGAAGTAGTGTTGGTTG
CTACCGAACTGCTGATGTTGTGGATATATTTGTCCTTGCATTTGCATGGGTTGATGCTGGTCTTCTGATTATGATGTTTA
AGATTAGTACCCCCTCTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTACTTGCTAATATTGTTGTAAATAA
A-------------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G543000
TCCTTCATCTGCTAGCTTGAACTATCTATCTAGTTGTTTTAAATTTGCTTGTATGAACTATGGTATGTCTGAAGTGTCCT
AGTAGTTTTAATGATCAACTGGATGGCGCGGACTAGATGTTTAAATCGAGTTAGAAGTCCGGCAAAGTTTACGGGATCTG
TTCTGCCAAACCGTCCGTCGGATCGCACATTTTGTTTATGGGATACTGTAAACGACATTTGCAGGATGACGGTATACGGG
ATCTGCTAGAGATGCTCTAAGAATTGGATGGCTCTCTCCCGTATCATGTTCGCTTTTTGAAAAACTACATTTGAACAAGT
CTGAGCTTACTGAATTCTAATAATCCCCACGGAATACAAATGAACTAATGACAATAGAGAGTTTGATATGTTGTGTTTTC
AACAAAGGTGGCCTTCCGGACTTGAACTTTTCATCTAGATGGTACTAGAGCGGTTTTCACACGAGCACAGTGAAGGTGGC
CTTGAACTTTACTCCTTGGTGTGCAAACTTCATGCAGTAGGTGCAAAATACTCTTCTTCTCTTTTTTTTTTGCATGGAGG
TGCAAAATACTCGGGTACAATCATTTGAACCCTTCCCGTTTGGCGTGTTTCGATCATACGTCTGTATCTTGCAATTTTGG
TATCTTGGATCTCATGAGCGCTCTAGGAAACGGACGACAAAACTCAGTTGGGAAAAATTCGCTGGGTAAATGTGGCAATG
ATGTCAAAAAATGAGGGTGTAAATTGAGAATTTCCTCAAAAAAGGCAATTCCTGTCAATTTGGTGAATTTTGGGTGTCAA
AAGAATTGAAATTAACCCTAACTCTTGCGCTTTTATATTCATGCGTTTTAGGAATCATGTGAATCA-CCCCTTTGTCTAC
CTCTTTTGTGCAACTACTTGAAAGAAAGTTGTGATGTGCCTCTTCTCCCACACTCACACAC--CATCTTCCCTTCCCTCG
CGTCTTTTTTTATAAGCTCCC-CTGCCTTCCATACGTCTCTGCCATCCGGCCCC-----GTCCACTCCACCAAACCACCG
GATCACCCGAGCCCATGGCCGGCCCCTCACCGTCGCCGTCCGCCAGCAGCCGCCGCCTGTCGGAGCTCCTGGAGGAGGAG
CAAGAGCCGTTCTCCCTTCACCTCTACCTCCTCGAGAAGGGCTGCTCCCCCACCACCCTGGACGCGGCCGGAGGCTGCGG
CGTTGCCTCCTTACCTTGCTGGCCGAGGAGCAGAGGCACCTCCCCGGCGCCGAGGCGGGTGACGGCCAGCAAGAGAACGC
CCGCCACCGCCAGCGGCCTCCTCTCCAAGTTCCTCCGCGGCTCGGCGGCGCCTGCGTCCACGAAAAGAAAGAAGAGGCTG
CGGTCGGCCGCCATTGGCCCGTGCTCCGTCGAAGGCGAGAAGACGGCGAGCAAAAGAAAGAACGCCGTCGAGGCACACGG
GGATGAAGCAGAGGACGACGTGGGAGGAAGCT------ACGACGACGACGACTCGTCGAAGCAGCTGAGCCCCGTGTCCG
TCTTGGAGCGCCCGCCATTCGAGAAGCCACCGCGGGCGTACGC------CGAGAGTAAGCAAGCACGCAGCCCCCATATC
TCTTCATCCGCGCCATTGGTCGTCGATCATGGACTA--------AGCTCACGCAGCGATAGTTGCGACCATTGCAGAAGC
CATCGTCGTCTTGAGGGAGCTCCTGGACGCGGCACGCAAGCCCGCATTGCTCCAGCGGAAAGTTGCCACAGAAAGCAGCA
AGGCCGGCGATGTCCTCATGGAGACTTCAACAACGACGACGACGACGATGGCGCA---CCCCGCACCGGCGCCCACGAGG
ACCGACCGTGCTGCCAGCGCTGCTGCACATTTGGAGGAGATGTTTGAGGCCAGGGGGCACGACCTCGTACCGTTGGACAT
GCCCGGCGAGAGAGGGGATGCCCGGCTGGGGCGGTGGGACGTCGGCGCCGAGCTAGCGGTTGCGGTGCTGGAAGAGCTGA
CGGAGGAGGTGGTGGCGGAGCTGATGGGGATGGTCCACCATGATGATGCCAATGCCATCGACGTGAAGTAGTGTTGGTTG
CTACCGAACTGCTGATGTTGTGGATATATTTGTCCTTGCATTTGCATGGGTTGATGCTGGTCTTCTGATTATGATGTTTA
AGATTAGTACCCCCTCTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTACTTGCTAATATTGTTGTAAATAA
AGATTTTCTAACCGGTTTTCAAGAGAGTTAACTCTATATGATTGAATGAAAAAAATAAGATATTGCTAATTTTTTGAAGA
TCACCATATGTTGACGCAGAAAACATCATACAATCATTAATTACAATTTTTTGTCACATATAGGATTGAACATTCATGGC
AAGTTCAGACACCACAGGTGTATTTACCTCTTTAGCAATCTCATGGGACACTCTATTGCCAACGAGTTTCACCTTTTGCA
ATGGTACATTGGGGAATAAGGCGGCTCAAGACCCCCAAGTCTCTCTCTTCAAACCGACAAAAGTTGACCTGTCTAGGAAA
AAACGGTCAGTCTCGATGATGATTGTCTTGTGCATGGCAATGACGGCATAAGGACTCGCTAAAGAGGTCTAAAGCACCGT
TTCCTTGACACTTGAGCAAATGGGGTGGAATTCCCACGAAGATAACAAAACTTCTCCCTGGTGATCTCTAGCCACCGCAC
TAGTGCTTGCAAAATCTTCTTCCATCACGTAGCTAGCATCCACATTGATCTTGATGATTGCATCGTGTGCCACCACCCAA
CCTACACGAGGTAAATCAGACGGAGGGGTACCAACATAGTGGACAACACTTCTACCTTCATCGGTTCCGGAGAGACCGGG
TCCTCCTAGCCTCCTAGGAGCTCTATAGTGAATGGCATCACAAATTGTCCAAAAATGAAGGATGCTCGTAACTAGCGAAT
GTTCGCCGGGGAGGGTGGCATTTGCGAACATTTTATGCGGCATTTTTAGTTGTGCGGAGATGACAACTTCTTCAGAGCGG
CATATGACAGTTTCTTCACACAAGGCATTTTTTGTTTTAAAATTGCCGTCATCTTTCCTCACAAATAAAACTGTCATCAA
ATGTTGTTTGCTTGTCACCCCTCTCCCAGCGAACGTCAGCTGGGTAGCATCATCGTAAATTAATACTAGCAGAAGCCGCA
ATTGAAGCGTTGCCGTCACCAAAATTCCCGTTACCACAATA
>chr2D_833
TTATAAC-------------------------------------------------------------------------
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--------------------------------------TCTTGCATTTTAGGATTCATGTGAGTCACCCCCTTTGTCTAC
CTCTTTTGTGCAACTACTTGAAAGAAAGTTGTGATGTGCCTCTTCTCCCACCCTCACACAC--CATCTTCCCTTCCCTCG
CGTCTTTTTTTATAAGCTCCC-CTGCCTTCCATACGTCTCTGCCATCCGGCCCTGCCCTGTCCACTCCACCAAACCACCG
GATCACCCGAGCC-ATGGTCGGCCCCTCACCGTCGCCGTCCGGCAGCAGCCGCCGTCTGTCGGAGCTCCTGGAGGAACAG
CAAGAGCCCTTCTCCCTTCACCCCTACCTCCTCGAGAAGGGCTGCTCCCCCACCACCCTGGACCCGGCCGGAGGCTGCGG
CGTTGCGTCCTTACCTTGCTGGCCGAGGAGCAGAGGCACCTCCCCGGCGCCGAGGCGGGTGACGGTCAGCAAGAGAACGC
------CCGCCAGCGGCCTCCTCTCCAAGTTCCTCCACGGCACGGCGGCGCCTGCATCCACGAAAAGAAAGAAGAAACTG
CGGTCGGCCGCCATTGGCCCGTGCTCCGTCGAAGGCGAGAAGACGGCGAGCAAAAGAAAGAACGCCGTCGAGGCACGCAG
GGCTGAAGCAAAGGACGACGAGGGAGAAAGCTACGACGACGACGACGACGACTCGTCAAAGCAGCTGAGCCCTGTGTCCG
TCTTGGAGCGCCGGCCATTCGAGAAGCCGCCGCGGGCGTACGC------CGAGAGTAAGCAAGCACGCAGCCCCCATGTC
TCTTACCCCGCGCCATTGGTCGTCCATCGTGCACTGTCGCACTGAGCTCACGCAGCAATACTTGCGACCATCGCAGAGGC
CATCGTCGTCTTGAGGGAGCTCCTGGACGCGGCACGCAAGCCCGCGTTGCTCCAGCGGAAAGTTGCCATAGAAAGCAGCA
AGTCCGGCGATGTCCTCATGGAGACTTCAACAACGACGACGACGACGCCGGCGCCGCCCCCCGCACCGGCGCCCGCGAGG
ACCGACCGTGCTACCAGCGTA---GCACATTTGAACCAGATGTTTGAGGCCAAGGAGCACGACCTCGTACCGTTGGACAT
GCCCGGTGAGAGGGGGGATGCTGGGCTGGGGCGGTGGGACGTCGGTGCCGAGCTAGCGGTTGCTGTGCTCGAAGAGCTGA
CGGAGGAGGTGGTGGTGGAGCTGATGGGGATGGTCCACCATGAAGATGCCAATACCATCGACGTGAAGCAGTGTTGGTTG
CTACCGAACTGCTGATGTTGTGGATATATTGTCCATTATATGCC------TTGATGTTGGTGTTCTGATTATGATGTTTA
ACACTATAGTAC--------------------------------------------------------------------
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>chr2A_839
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--------------------------------------TCTTGCATTTTAGGAATCATGTGAATCACCCCCTTTGGCTAC
CTCTTTTGTGCAACTACTTGAAAGAAAGTTGTGATGTGCCTCTTCTCCCACCCTCACACACACCATCTTCCCTTCCCTCG
CGTCCTTTTTTATAAACTCCCACTGCCTTCCATACGTCTCTGCCATCCGGCCCTG-----TCCACTCCACCAAACCACCA
GATCACCCGAGCCCATGGCCGGCCCCTCACCGTCGCCCTCCGGCAGCAGCCGCCGCCTGTCGGAGCTCCTGGACGAGCAG
CAAGAGCCCTTCTCCCTTCACCTCTACCTCCTCGAGAAGGGCTGCTCCCCCACCACCCTGGACGCGGCCGGAGGCTGCGG
CGTTGCG---TTACCTTGCTGGCCAAGGAGCAGGGGCACCTCCCCGGCGCCGAGGCGGGTGACGGCCAGCAAGAAAACGC
------CCGCGAGCGGCCTCCTCTCCAAGCTCCTCCACGGCACGGCGGCGCCTGCATCCACGAAAAGAAAGAAGAAACTG
CGGTCGGCCGCCATTGGCCCGTGCTCCGTCGAAGGCGAGAAGGCGGCGAGCAAAAGAAAGAACGCCGTCGAGGCACACAC
GGCTGAAGCAGCGGACGACGAGGGAGAAAGCTACGAG------GACGACGACTCGTCGAAGCAGCTGAGCCCTGTGTCCG
TCTTGGAGCGCCGGGCATTCGAGAAGCCGCCGCGGGCGTACGCCGTCGCCGAGAGTAAGCAAGCACGCAGCCCCCATATC
CCTTCCTCCGCGCCATTGGTCGTCGATCATGCACTATCGCACTGAGCTCACGCAGCGATACTTGTGACCATCGCAGAGGC
CATTGTCGTCTTCAGGGAGCTCCTGGACGCGGCACGCAGGCCCGCGTTGCTCCAGCGGAAAGTTGCCACAGAAAGCAGCA
AGTCCGACGATGTCCCCACGGAGACTTCAACA------ACGACGACGCCGGCGCCGCCCCCCGCACCGGCGCCCACGAGG
ACCGACCGTGCCACCAGCAT---TGCACATTTGGACGAGATGTTTGAGGCCAATGGGCACGACCTCGTACCGTTGGACAT
GCCCGGCGAGAGGGGGGATGCCCTGCTGGGGCGGTGGGACGTCGGTGCCGAGCTAGCGGTTGCAGTGCTGGAAGCGCTGA
CGGAGGAGGTGGTGGCGGAGCTGATGGGGATGGTCCACCATGAAGACGCCAATGCCATCGACGTGAAGCAGTGTTGGTTG
CTACCGAACTGCTGATGTTGTGGATATATATTTGTCCTCGT----ATGGGTTTATGCTGGTCTTCTCATTATGATGTTTA
AGACTAGTAC----------------------------------------------------------------------
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S-----------------------------------
---------------------------------------------------S----------------------------
-----------------------------------------------------S--------------------------
------------------------------------------S----------------------------------S--
--------S-----------------------------------------------------------------------
------S-------------------------------------------------------------------------
SSSSSS------------------------------S----S-------------S-------------------SS---
------------------------------------------------------------------------------S-
--S-----------------S-----S---------------------------------------------S-------
------------S---------------S---------------------------------------------------
-----S-------------------------S----------------------------S----------S-----S--
---------------------------------------------S----------------------------------
--S--------------------------------------------SS-----S-------------------------
------------S------SSSS------------S----------------S---------------------------
------------S--------------------------------S-----------------S----------------
-------------------------------------------S------------------------S-----------
-------------------------------S--S--S---SSSS-----------------------------------
---S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_283
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-----------------------TTGGATGGCTCTCTCCCGTA-------------------------------------
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>reverse_1443
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--ATGAAGCAGAGGACGACGTG----------------------------------------------------------
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>forward_470
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--------------------------------------------------CGGTTTTCACACGAGCACAG----------
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>reverse_2495
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--------------AATAAGGCGGCTCAAGACCC----------------------------------------------
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