>input_sequence_57486
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------ATGGGGTAAGCTCGCCGTCGCACACTTCCAGTTGAT
TTTCCATGGTTGTTTCTTGGCTAGGATTAGCGATCTGGAATGGCTAGTCTTCTGCCTTCTGTACCGCGTGATTTAGAGGC
ATGGCGTGAGCTTTTGGTTAGATTAGACCGGCCAGATTCTCACTGCGCCTCGAGCTTATGGACGGTCAAGTGCTGATCAG
ATTATACAACGTCAGCACTAAACATATTCATAAGCGATATTAATTCGTTGCTGCCGTGTAGTCATATTTTCTTGGTCCAA
AACTTGGATCTGGGAGGTTATGCATGGTAGCATACACTTCGATAAGAAATCATCCTGATTTAGTAGTAAATCTGTTAC-T
TTTAACCATGCTTTTTGAGTAATTACTTC-AACATGTACTAGGAGATTTTGTTCTACTA------AATGATATGAAAGTC
CGTGCACAACAAAGCATTTTAGATGGCTGTTTCTCTTTGAATCGTTAGCGATAATACATTTGCGCTGTAGGGTGGCCCTT
ATTTTCTAGATATAGCATTCTGATTTTAAACGAATGCAATGTCAAACTGTTGTGATGCAGACCAAGAGTCTGTTATATTG
TTTTGCTTTTGCTGTGGTAACCGTGAATTATTTGCATTGCAGTAAGACACGTGGTATGGGAGCTGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCATACAAGAAGAGCCACTTGGGTAACGAGTGGAAGAAACCCTTCGCC
GGGTCATCTCACGCCAAGGGCATTGTTTTGGAGAAGATGTATGTTGAAATGGGCAATATGTTTTTCTTCTTACCCTTGTT
TTTATGGGGTGAAGCTAATATCTG--GACT----CTAT-------TGCAGCGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTGCAGCTTGTGAAGAACGGAAAGAAGATTGCTGCCTTCGTTCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAGAATGTATGTTCTCCATCTTGGTACTTTTCAAATGC-------------------------------
------TTGCT-------CTGCTGTAGGTACTAAGTCTGTCTTTCACCTGTTGTC-------------------------
--CAGGACGAGGTGCTGATTGCTGGATTCGGTCGTAAGGGGCATGCCGTGGGAGATATTCCCGGTGTCCGGTTCAAGGTC
GTCAAGGTGTCTGGTGTGTCTCTGCTTGCCCTCTTCAAAGAGAAGAAGGAGAAGCCCAGGTCTTAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3B_1_TraesCS3B01G385700
CGAAGAGGGTGTTGAAGGTGGACAGGAAGAGGTGGGGCGGGCGGCGGAGGCGGAGGACGGAGAGGAGCAGCAGGAGGAGG
AGCCGCGGGGAGGGCGGGGACGGGAGGTGGCGGAGCAGGGCGAGCGCGTGGGGAGAAATCACCGGAGGGAGATCCGTACC
TGCTTGGATTGTCGGCGACCGCCGCCGCTCCCGAAGACGAAGTTGTCGTCACGGCGGTAGGTTAGCCCCGGCCACGCCGC
CGCCCTCCCAGATCCAGACCTCGTCGCCTCTCCCAATCCAGCGAGCACATGCCGCGGCTTCAGCTGCAGGGGCGTTTTCC
TGAAACAACGGCTGGAAAACGAACGCGCGTGCCGTGGGAGCGGGGACGCTCTCGTCCGTCCGATGAAAGAGACGATCCGA
CGGACGCGGGACGCGTGATCGGTCGGTTGCACGATAGCTTTTCCCATTATTCATACACATAATACAAAGAAAACCATGAT
CCTTGGGGTGCCCCCAGCCTCGGCTACTCTCTAAGCTTAACTCGATATTTGTTGCAAAGGCTCAACGGCTCAACAAAAAC
GGGTCATGTAGCTATCTGTGGCTTCATCAAACAGTAGTTCGGGCGGTTGATCTTTATGATAAGGGAATCAAAGAACGTTC
GAGATCATGTCAAAAAGAAAAAGTTCGATTTAAAAAAAGAAAAAAAAAACACGTTCGAGATCAGTTTGAGGGTCTAAGCA
TCAAGAGGGTTTCCACATGCCCACGTGGCAGACCAGGTTCAGCGTCCGTATCCCTCGCCTCTTCCTCATCAGGGCCGTAG
CTGCATCGACCATCACCAATCTCAAAGCATTGAGCCCACAAGCAAACCCTA-GTCGCCAAAGCGGGCACATATAAATAGC
TCGGCCTCCTCGGCCTCATCCCTCCCCTCTATTGCCGCCGCCGCCGCTCCCAGCTCGCGCTCCCTCGCCCAGCT---GCC
GCCGCCGCCGCCTCGTCGGAGTTCTTCCTACCCCTTTCGCCAACATGGGGTAAGCTCGCCGTCGCACACTTCCAGTTGAT
TTTCCATGGTTGTTTCTTGGCTAGGATTAGCGATCTGGAATGGCTAGTCTTCTGCCTTCTGTACCGCGTGATTTAGAGGC
ATGGCGTGAGCTTTTGGTTAGATTAGACCGGCCAGATTCTCACTGCGCCTCGAGCTTATGGACGGTCAAGTGCTGATCAG
ATTATACAACGTCAGCACTAAACATATTCATAAGCGATATTAATTCGTTGCTGCCGTGTAGTCATATTTTCTTGGTCCAA
AACTTGGATCTGGGAGGTTATGCATGGTAGCATACACTTCGATAAGAAATCATCCTGATTTAGTAGTAAATCTGTTAC-T
TTTAACCATGCTTTTTGAGTAATTACTTC-AACATGTACTAGGAGATTTTGTTCTACTA------AATGATATGAAAGTC
CGTGCACAACAAAGCATTTTAGATGGCTGTTTCTCTTTGAATCGTTAGCGATAATACATTTGCGCTGTAGGGTGGCCCTT
ATTTTCTAGATATAGCATTCTGATTTTAAACGAATGCAATGTCAAACTGTTGTGATGCAGACCAAGAGTCTGTTATATTG
TTTTGCTTTTGCTGTGGTAACCGTGAATTATTTGCATTGCAGTAAGACACGTGGTATGGGAGCTGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCATACAAGAAGAGCCACTTGGGTAACGAGTGGAAGAAACCCTTCGCC
GGGTCATCTCACGCCAAGGGCATTGTTTTGGAGAAGATGTATGTTGAAATGGGCAATATGTTTTTCTTCTTACCCTTGTT
TTTATGGGGTGAAGCTAATATCTG--GACT----CTAT-------TGCAGCGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTGCAGCTTGTGAAGAACGGAAAGAAGATTGCTGCCTTCGTTCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAGAATGTATGTTCTCCATCTTGGTACTTTTCAAATGC-------------------------------
------TTGCT-------CTGCTGTAGGTACTAAGTCTGTCTTTCACCTGTTGTC-------------------------
--CAGGACGAGGTGCTGATTGCTGGATTCGGTCGTAAGGGGCATGCCGTGGGAGATATTCCCGGTGTCCGGTTCAAGGTC
GTCAAGGTGTCTGGTGTGTCTCTGCTTGCCCTCTTCAAAGAGAAGAAGGAGAAGCCCAGGTCTTAGATTGCCGTTGCATG
GAGTAGACAGTATGTCGG-CCTTTAGATGTTGAAGGAGGAGGGTGGTTCCTTTGTGTTTACAGCACTTTTAAGTTGATAA
CTTATGATCGTGTTGGTGAAAACTATGCCTTTGTCACATTTTGCTCCTGTTAAGGGAAAGTGCTACTGTTGTGAGTTTTG
TTCCCCAGTTTGAGATGAAT----TTCCCTTGTCCTGAAATTGCCTTGGGCATTGGTGGTGTATTTAGAATTTGGTGTTG
TTTGTTTCAGGTGTAGGGACCGGATTCA-AGCTGA-ATCTGAAACAAACAGTTATTTTGAATCAGCTTTGAA-----TAG
CCAAAATCTGATTTGGGTTTGCCAGCACAGT------AATCCGCAGCTGATTCTGTTGGAGCTGAAGCCCAAATAAACAA
GGTCCCATGCACCAAATCTCAACCTAATGTGGTGAGGTG------------GCTGTGTTTGATCTGTTCTCTCACGTAGG
TGGCTGTG------------------------------TGCGGCATTTGCTACTGGAGCCAGTTACATG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TATCGCTG
AAGCCCATAGCGTAGCTGCAGGATGAATATGATTGTTTGAACTTATCCATGCATGCTTGGATGAAAAACTTGGCGGAATG
AGGCTGTTCCAGTTAACATTTTCCTTTATGGACCCTAATGTCCAGCGAACCTTACATAGGAAGGGATGACATTTGCAAAC
ATTTCCACTGGCAGTTTTAGTTATAAAGAATGACATTTTCTTTAGAAGAGGATGACAGTTTATGGTATATACTATAAGAC
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTTTTTCCAGAAAGCTATCACTTCCTGATTTAC-ATTCCCCAGTTAACATTTCCCTTTATGTATGGATTTGGTGATGGCG
ATTGTGAGCAGCAATTTAGGCAGACTCT--AGATTTGATGATGGCGATTCGGAACATCCAGTTCAAGCATTGCGAAAGCA
GTGAATGAAATAATTGGTTTTGCTATGATCGTAAAT-CCCTTGTAATTGGATCGATGAGACACTAGCTCTATTATTCATT
AATTAAAAAAA
>chr3D_691
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACGTTCGAGATCAGTTTGCGGGTCTAAGCA
TCAAGAGGGTTTCCACATGTCCACGTGGCAGACCAGGTCCAGCGTCCGCATCCCTCACCTCTTCCGCATCAGGACCGTAG
CTGCATCGACCATCACGAATCTCAAAGCATCGAGCCCACAAGAAAACCCTA-GCCACCAAAGCTGGCACATATAAATATC
TTTGCCTGCTGGCCCTCATCCCTCCCCTCTATTGCCGCCGCCGCCGCTCCGAGCTCGCGCCCCCTAGCCCAGCCGCCGCC
GCCGCCGCCGCCTCGTCGGAGTTCTTCCCACCCCTTTCGCCAACATGGGGTAAGCTCGCCGTCACACACTTCCGGTTGAT
TTTCCATGGTTGCTTCTTGGCTAGG-TTAGCGATCTGGAATGGCCAGTCTTCTGCCTTCTGTACCGCGTGATTTAGAGGC
ATGGCGTGAGCTTTTGGTTAGATTAGACCGGGCAGATTGTCACTGCGCGTCTAGCTTATGGACGGTCAAGTGCTGATCAG
ATTATACAACGTCAGCACTAAACATATTCATAAGCGATATTAATTCGTTGCTGCCGTGTAGTCATATTTTCTTGGTCCAA
AACTTGGATCTGGGAGGTTATGCATGGTAGCATACACTTCGATAAGAAATCATCCCGATTTAGTAGTAAATCTGGTTCTT
TTTAACCATGTTTTTTGAGTAGTTACTTC-AACATGCACTAGGAGATTTTAG--------------ATGATATGGAAGTG
TGTGCACAACTAAGCATTTTAGATGGCTGTTTCTCTTTGAATCGTTAGCAATAATACATTTGCGATGTAGTGTGGCCCTT
ATTTTCTAGATATAGCTTTCTGATTTTAAGTGAATCCAATGTCAAACTGTTGTGATGCAGACCAGGAGTCTGTTATGTTG
TTTTGCTTTTGCTGTGGTAACCGTGAGTTATTTGCATTGCAGTAAGACACGTGGTATGGGAGCTGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCATACAAGAAGAGCCACTTGGGTAACGAGTGGAAGAAACCCTTCGCC
GGGTCATCTCACGCCAAGGGCATTGTTTTGGAGAAGATGTATGTAAAAATGGGCAATATGTTTTTCTTCTTACCCTTGTT
TTTATGGGGTGAAGCTAATATATGATGACT----CTAT-------TGCAGTGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTGCAGCTTGTGAAGAATGGAAAGAAGATTGCCGCCTTCGTTCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAGAATGTATGTTCTCCATCATGGTACTTTTCAAATGT-------------------------------
------TTGCT-------CTGCTGTAGGTACTAAGTTTGTCTTTCACCTGTTGTC-------------------------
--CAGGACGAGGTGCTGATCGCTGGATTCGGTCGTAAGGGACATGCTGTGGGAGATATTCCCGGTGTCCGGTTCAAGGTC
GTCAAGGTGTCAGGTGTTTCTCTGCTTGCCCTCTTCAAAGAGAAGAAGGAGAAGCCCAGGTCTTAGATTGCCGTTGCATG
GAGTAGACAGTATGTCGGGCCTTTAGATGTTGAAGGAGGA---TGGTACCTTTGTGTTTACAGCACTTTTAAGTTGATAA
CTTATGATCGTGTTGGTGAAAACTATGCC-TTGTCACATTTTGCTCCTGTTATGGGAAAGTGCTACTGTTATGAGTTTTG
TTCCCCAGTTTGAGATGAAT----TTCCCTTGTCCTGAAATTGCCCTGGGCATTGGTTGTGTATGTAGAATTTGGCCGTG
TTTGTTTCAGCTTTAGGGACCGGATTCA-AAGCTATATCTGAAACAAACAGTTGTTTTGAATCAGCTTTTGATTAGTTAG
CCAAAATCTGATTTGGGTTTGCCAGCACAG------GAATCCGCAGCTGATTCTGTAGAAGCTGGAGCCCAAACAAACAA
GGTCCCATGCACCAAATCTCAACCTAATGTGGGAAGGTGTCTGTGTATTTCGCCGTGTTG--------------------
--------------------------------------------------------------------------------
------AGCAGCCTAAAGAAGATAGAATGGAGGTGCGTGCTCCTTTGTT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTGAAGCTGCTA
TCGCTGAAGCCTATAGCGTAGCTGCCTAAAGAAGATAGAATGGAGGTGCGTGCTCCTTTGTTCTGAAGCTGCTATCGCTG
AAGCCTATAGCGTAGCTGCA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGATTTGGTGATGGCG
ATTGAGAGCAGCAATTTAGGCAGACTGT--AGATTTGATGAT--CGATTCGGAACATCCAGTTCAAGCATTGCCAAAGTA
GTGCATGAAATAATTGGTTTTGCTAT------------------------------------------------------
-----------
>chr3A_713
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTAAACA
TCAAGAGGGTTTCCACATGTCCACGTGGCAGACCAGGTCCAGCGTCCGTATCCCTCGCCTCTTCCGCATCAGAACCGTAG
CTGCATCGACCATCACGAATCTCAAAGCATCGAGCCCACAAGAAAACCCTAAGCCACCAAAGCGGGCACATATAAATAGC
TCCGCCTCCTCGGCCTCATCCCTCACCTCTATTGCCGCCGCCGCCGCTCCCAGCTCGCGCTCCCTCGCCCAGCCGCCGCC
GCCGCCT---CCTCGTCGGAGTTCTTCCCACCCCTTTCGCCAACATGGGGTAAGCTCGCCGTCACATACTTCCGGTTGAT
TTTCCATGGTTGCTTCTTGGCTAGGATTAGCGATCTGGAATGGATAGTCGTCTGCCTTCTGTACCGCGTGATTTAGGGGC
ATGGCGTGAGCTTTTGGTTAGATTAGACCGGCCAGATTGTCACTGCGCGTCGAGCTTATGGACGGTCAAGTGCTGATCAG
ATTATACAACGTCAGCACTAAACATATTCATAAGCGATATTAATTCGTTGCTGCCGTGTAGTCATATTTTCTTGGCCCAG
AACTTGGATCTGGGAGGTTATGC-TGGTAGCATACACTTCGATAAGAAATCATCCTGATTTGGTAGTAAATCTGTTTC-T
TTTAACCATGTTTTTTGAGTAATTACTTCCAACATGTACTAGGAGATTTTGTTCTACTACTCCTAAATGATATGAAA--G
TCTGCATAACTAAGCATTTTAGA---CTGTTTCTCTTTGAATCGTTAGCGACCGTACACTTGCGCTGTAGGGTGGTCCTT
ATTTTCTAGATATAGCCTTCTGATTTTAAATGAATCCAATGTCCGACTGTTGTGATGCAGACCAGGAGTCTGTT------
----GCTTTTGCTGTGTTAACCGTGAATTATTTGCATTGCAGTAAGACACGTGGTATGGGAGCTGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCATACAAGAAGAGCCACTTGGGTAACGAGTGGAAGAAACCCTTCGCC
GGGTCATCTCATGCCAAGGGCATTGTTTTGGAGAAGATGTATGTTGAAATGGGCAATATGTTTTTCTTCTCACCCTTGTT
TTTATGGGGTGAAGCTAATATATGATGGCTATTGCTAT-------TGCAGTGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTGCAGCTTGTGAAGAACGGAAAGAAGATCGCTGCCTTCGTTCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAGAATGTATGTTCTCCATCTTGGTACTTTTCACATGT-------------------------------
------ATGTTCTTCTTCCTGCTGTAGGTATTAAGTTTGTCTTTCACCTGTTGTC-------------------------
--CAGGACGAGGTGCTGATTGCTGGATTCGGTCGTAAGGGACATGCTGTGGGAGATATTCCCGGTGTTCGGTTCAAGGTC
GTCAAGGTGTCTGGTGTGTCTCTGCTTGCCCTCTTCAAGGAAAAGAAGGAGAAGCCCAGGTCTTAGATTGCCGTTGCATG
GAATAGACAGTATGTCGGGCCTTTAGATGTTGAAGGAGGA---TGGTTCCTTTGTGTTTACAGCACTTTTAAGTTGATAA
CTTATGATCGTGTTGGTGAAAACTTTGCC-TTGTCACATTTTGCTCCTGTTAAGGGAAAGTGCTACTGTTATGAGTTTTG
TTCCCCAGTTTGAGATGAATATGGTTCCCTTATCCTAAAATTGCCGTGGGAGTTGGTGATGTATGTAGAATATGGTGGTG
TTT----CAGCTTTAGGAAGCAGGTTCGCAGCTGA-ATCTGAAGCAAACAGTTATTTTGAATCAGCTC-TGAATAATCAG
CCAAAATCTGATTTGGGTTTGCCATGTCAGCACGGTGAATCCGCAGCTGATTCTGTCGAAGCTGAAGCCCAAACAAACAA
--TCCCATGCACCAAATCTAATCTG-----GGGAAAGTGGCTGTGTATTTCGCTGTGTTTGATCTGTGCTCTCGTGTAGG
TGGCTTGTGTCCCTGATGAAAATTTATATTCTGCTCGTTGCGGCATTTGCTACTGGAGCCAGTTTCTCCAAAACAAAAAG
ATTGAAAGCAGCCTAACGAAGATAGAATGCAGGTGCGTGCTCCTTTGTTCTGAGGGCATGGCCAACGTGCTGCCCCGCAG
GTCCAGCTCGGCTCGGAGCCTGGAACTCAGGTTCGGGTGATGCTCTGCACAGGAACCGGTCTCCTGCAGAGGAGGTAGGT
GCTCCATGAGAAAAGCTAGAGAAAGAGGAAAAAGGGGGAGAGAGAAGGTGAAGAACCAAGGAGGAAGAAATAGATGGGCG
AGAAAAGAATTGAGATGGGTCCACTATGATGACATCTGCATATGGCTGCCTCGGTTGGGTGAAGATAAGTGTAAATGGTC
GTTTTAATACTTTATGTCTAAACAAATGGATGGAGCAGCATGAAGGTGATGCTTCCATTGCTCATGCCCTGAAGCTGCCA
TCGCTGACCC----------------------------------------------------------------------
------------------------------GATTGTTTGAACTTA--CATGCATGCTTGGATGAAAAACTTT--GGAATG
ACGCCGTTCCAGTTAACATTTCCCTTTATGCACTCTAATGCCCAGCGAACCTTCCCAAAGAAGGGATGACATTTAAGAAC
GTTTTCACTAGTAGTTTCCCTTATTAAGGATGACATTTTCTTTAGAAGAGGATGACGGTTTATGGTATACTCCCTTCGTT
CCTAAATATTTGTCTTTCTAGACATTTCAAATGACTACTACATACGGATGTATGTAGACATATTTTAGAGTGTAGGTTCA
CTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATGCCTAGAAAGACAAGTATTTAAGAACGGAGGGAGTAGAAGACAAT
TTTTTTCCAGAAAACTATCACCGCCTGATTTACGATTTCCCAGTTAACATTTCCCTTAAAGTATGGATTTGGTGATGGCA
ATTGTGAGCAGCAATTTAGGCAGACTCTGTAGATTTGATGATGGCGATTCCAAACATCCAGTTCAAGCATTGCCAAAGCA
GTGAATGAAATAATTGGTTTTGCTATGATTGTAAATCCCCTTGTAATT--------------------------------
-----------
>chr1B_1628
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CAGTAAGACACGTGGTATGGGAGCCGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCATACAAGAAGAGCCACTTGGGCAATGAGTGGAAGAAACCCTTCGCT
GGATCGTCTCACGCCAAGGGCATTGTTTTGGAGAAGATGTAAGTTGAACAGCAGATTTATG---------TTCCCTTGTT
TTTATCTCATGTTTTGAATCCTGACCAACGTGCAATTGGTCCCC-TGCAGCGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTCCAGCTGGTGAAGAACGGGAAGAAGATCGCTGCCTTTGTGCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAAAACGTATGTGCCCCTCACCCATTGCTCAGATATATGCGAC--------------------------
--------------------------------ATGTCTGCTATATGCAACCAACCTAACCTCTTGGCTTT-GATGGATGC
TTCAGGACGAGGTGCTGATTGCTGGATTCGGTCGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTCAAGGTT
GTCAAGGTATCTGGTGTGTCGCTGCTCGCTCTCTTCAAGGAGAAGAAAGAGAAGCCCAGATCTTAGATTGCAGTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr1A_1628
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CAGTAAGACACGTGGTATGGGAGCCGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCGTACAAGAAGAGCCACTTGGGCAATGAGTGGAAGAAACCCTTTGCT
GGATCGTCTCACGCCAAGGGCATTGTCTTGGAGAAGATGTATGTTGAACAGCAGATTTGTG---------TTCCCTTGTT
TTTATCTCATGTTTTGAATCCTGACTAACGTGCAATTGCTCCCC-TGCAGTGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTCCAGCTGGTGAAGAACGGGAAGAAGATCGCTGCCTTTGTGCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAAAATGTATGTGCCCCTCACCCATTGCTCAGATATGTGAA----------------------------
--------------------------------ATGTCTGCTATATGCAACCAACCTAACCTCTTGAC-TTTGATGGATGC
TTCAGGACGAGGTACTGATTGCTGGATTCGGTCGTAAGGGTCATGCCGTGGGAGATATTCCCGGTGTCAGGTTCAAGGTT
GTCAAGGTATCTGGTGTGTCGCTTCTCGCTCTCTTCAAGGAGAAAAAGGAGAAGCCCAGGTCTTAGATTGC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr1D_1628
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CAGTAAGACACGTGGTATGGGAGCCGGGCGCAAGCTCAAGA
CCCACCGCAGGAACCAGAGGTGGGCTGACAAGGCATACAAGAAGAGCCACTTGGGCAATGAGTGGAAGAAACCCTTTGCT
GGATCGTCTCACGCCAAGGGCATTGTCCTGGAGAAGATGTATGCTGAACAGCAGATTTATG---------TACCCTTGTT
TTTATCTCATGTTTTGTATCCTGACTACCGTGCAATTGCTCCCCCTGCAGTGGTATTGAGGCCAAGCAGCCTAACTCTGC
CATCCGTAAGTGTGCTCGTGTCCAGCTGGTGAAGAACGGGAAGAAGATCGCTGCCTTTGTGCCCAATGATGGTTGCCTGA
ACTTCATCGAGGAGAACGTATGTGCCCCTCACCCATTTCTCAGATATATGCGATATGTCTGCTATATGCAGCCAACCTAA
CCTCCATTGCT-------CGCATATATGTGATATGTCTGCTATATGCAACCAACCTAACCTCTTGAC-TT-GATGGATGC
TTCAGGACGAGGTGCTGATTGCTGGATTCGGTCGTAAGGGTCATGCCGTGGGAGATATTCCCGGTGTCAGGTTCAAGGTT
GTCAAGGTATCTGGTGTGTCGCTTCTCGCTCTCTTCAAGGAGAAGAAGGAGAAGCCCAGGTCTTAGGTTGC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----------
-------------------S------------------S--------------------------S-------S------
----------------S-------------S-----------S----------S-S------------------------
--S----------------------------------------------------------------------S------
----------------------------S----------------------------------S---------S------
------------S-------------------------------------------------------------------
--------------------------------------S---------S-------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
----------S--------------------------------------------------------------------S
S---------S---------------------------------------------------------------------
----------------S-------------S----S----------------------------S-----------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
----------------------------------------SSS-------------------------------------
-----------------------------S----------------------------------------S---------
---------------------------------------------S------------------S------------S--
----------S-S--------------------------------------------------------SS---------
------------------------------S-------------------------S-S--------------S------
--------------------------------SS---------------------------------S-----SS-----
-----SSS--------------------------------------------------------S-SSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------SSSSSSSSSS---------------SS------------------------SSS------
-S--S----------------S--------S--S------S------------S-SS-S---------------SSS---
S---S----S-S-----SSS----S---S---------------------------S------------SS-SS-SS-SS
SS------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-------SS--------------S-------------------S-S--------------------
-------------------------------------------------------------------------S------
-----------------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_165
--------------------------------------------------------------------------------
-----------------------------------------------------------------AGGGAGATCCGTACC
TGCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_1862
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTGGACTCTATTGCAGCGGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_615
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGTTCGGGCGGTTGATCTTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_2573
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GTAGGGACCGGATTCAAGCT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
