>input_sequence_57442
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----------------------------------------ATGGAGAAGCCGGTGGAGGAGCCGTTCTCGAGGCTCACCG
ACGACCTAACCGCGGAGATCCTCTCCCGCGTGCCCTACAAATCACTCCGCATCTGCGAGCGCGTGTGCCCGCCCGGCCTG
GCGCGCCGTCATCACCGACCCCGCGAGCCGGAGGAGGATCGCGCAGACCCTGGCCGGCTTCTTCCACATCGTCACCGACG
ATCGACGAGGCCCCGGGCTTCGCCGTCAGCTACGCCGACCTTTCCGCCTTCCCCTGGGCGAGCGTCCCCAAGGCCCGACC
GCACGGACTGC-----------------TTCTTCTCCCCCGAGGATTCCTCCGACGGACTGTTCCTCACCCGCGTCATTC
CACCCCTTACCTGCAGTCAGCGTGATGAAAAGTTTCTTTACATGGTCTCCAATCCGGCCACCGGCGATTACTTTCTGCTG
CCTCACTCCGGCTACACCGGCGGCCACCGCCGTGCTTACCTGGGCTTCGACGGCGATGCGCCCACCCAAGAGTTTCATGC
GTTCGAGTTTGTGATGGAAAAGACCCAGGGTTTCCGATGCCCTGTTGTCACAAGGGTGAACATTTACTCTTCGGAAACTG
GTGCATGGGTGGCAAGGGAAAGCCAGTGGAACGGCGGATTTACCTTGCGCCATCGTCAGCCCGGAGTTTTCCGCAAGGGG
TGTCTGCACTTGCTCCCAGATCAGTCTGCGTTGGCAATGGTTGATGCGCAAGGGCTGAGA-------TGGAGAACCGTTC
CGCTGCCAACA------TTCGTTGATCCGAGCATCCAGATCTTCATCGGTAAGTCTGCCGGGAAGCTGCTTTATATCGAC
TCCAGCGATCGTCAAGGACGGGGCTCAGATAAAATTTTCACCATATCGGTTTATGCTCTTAGTGTTGGTGTTTATCAGCG
GGATGCGCCTTGCCCTGATGACATATTCGTGCCTTGGGAACCGTTGCGGAAGCTTTCAAATGTTGCTCCAAGGAAGAGGT
TTCAGGTCGACTTGGCGCTAAAATTCACTGGAGTACACCCACATGCCAATATAATCTTCTTGGTATCTTTTTGGGATGGT
GAACTGATTGCATATGATCTGGATCATCATGAGA-GCACTGTTGTATATCACATT------CACCCTGACTATGAGAGGT
CTAGGCCATTTCTCCCATATGTGTCATTGCTGTCCCGCCTACCAGAGGATGGAGGAATGCAGTTGGCAACACTCCAAATT
GATGAATGA-----------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G041600
AGCTCATCGCTCGATTTAGGGAAAAGTGGATCTCGATGGCGAACGGGTGCGGTCTACGAAGAACTTTGAGTGCGAATGAG
AAAGGGCACACACACACACACACCTAGCAGCAAGTGGGGATTAAGTGCAGTGTCGATCCCCCACCCCTCGCCATGCTTGT
GGATCGAGGAGACCTTTGCACCGCACCCAATCTCCTCATCGAGTCGTGCGATATGGCAAAGGAAATGTAACACAACACAT
GGTACAAAAATTTCCTCAACACTACACGTTCGCGTGTCAACGCCGTGGCCCACCTCATCGAGGACCTGCCGGTAGACTAG
CAAACTCGGAGCCTGGAGATCGGGAACGGACACACAGATCCCCCTGATAGTCACTTTTTGTAATAATTTATTTTGATATT
ACATGAACCATTACATATTGAGTAAATTTGTCTATGGCTTTGGTACCAGAGTGGTATATTTAACAAGACTGTCAAACAGT
TGACACAAGTTCCGTTCAAACTCTTGTTCCTCGATGGATGGATCCATGGGATGACCTTTTAGGACATTACAAGTAGGAGG
GGAACTTTTGGTCTATGGGCGTATACATTCTATATGAATTTTTATACTAATTAAATAAGAAGTCAACTAATTTTGAAAAC
ATTTTTAAAATAAACTTGACCTTCCATTGTACTTGTAAAAAAAATCAAAAAAAAACCTCCGTTGACTTCTGTTAGAAAAA
AAAGCCCTGAAGTCAACACTGGACTTTTATTCTCGAAAATTTATATACTAGTACAAAAGAATGTCAAGCTTCTTCTATAA
AAAACTTCTAAACTTTATTGTCTTTTATTTTAGTTATTAAATTATTGTAAACAAGTTCATGGTGGGCCTTGTCTATCCCG
TACCATTCCCCTCCGAGGCCTCAGTCACCGACTCACCGGTCGCCACTCCGTGGAATCCCCAGACCTAAAAGCCACTCCGC
CGCCGGCGGCCATCCCCCGTCGCAGCCTACCTACCAAGCCATGGAGAAGCCGGTGGAGGAGCCGTTCTCGAGGCTCACCG
ACGACCTAACCGCGGAGATCCTCTCCCGCGTGCCCTACAAATCACTCCGCATCTGCGAGCGCGTGTGCCCGCCCGGCCTG
GCGCGCCGTCATCACCGACCCCGCGAGCCGGAGGAGGATCGCGCAGACCCTGGCCGGCTTCTTCCACATCGTCACCGACG
ATCGACGAGGCCCCGGGCTTCGCCGTCAGCTACGCCGACCTTTCCGCCTTCCCCTGGGCGAGCGTCCCCAAGGCCCGACC
GCACGGACTGC-----------------TTCTTCTCCCCCGAGGATTCCTCCGACGGACTGTTCCTCACCCGCGTCATTC
CACCCCTTACCTGCAGTCAGCGTGATGAAAAGTTTCTTTACATGGTCTCCAATCCGGCCACCGGCGATTACTTTCTGCTG
CCTCACTCCGGCTACACCGGCGGCCACCGCCGTGCTTACCTGGGCTTCGACGGCGATGCGCCCACCCAAGAGTTTCATGC
GTTCGAGTTTGTGATGGAAAAGACCCAGGGTTTCCGATGCCCTGTTGTCACAAGGGTGAACATTTACTCTTCGGAAACTG
GTGCATGGGTGGCAAGGGAAAGCCAGTGGAACGGCGGATTTACCTTGCGCCATCGTCAGCCCGGAGTTTTCCGCAAGGGG
TGTCTGCACTTGCTCCCAGATCAGTCTGCGTTGGCAATGGTTGATGCGCAAGGGCTGAGA-------TGGAGAACCGTTC
CGCTGCCAACA------TTCGTTGATCCGAGCATCCAGATCTTCATCGGTAAGTCTGCCGGGAAGCTGCTTTATATCGAC
TCCAGCGATCGTCAAGGACGGGGCTCAGATAAAATTTTCACCATATCGGTTTATGCTCTTAGTGTTGGTGTTTATCAGCG
GGATGCGCCTTGCCCTGATGACATATTCGTGCCTTGGGAACCGTTGCGGAAGCTTTCAAATGTTGCTCCAAGGAAGAGGT
TTCAGGTCGACTTGGCGCTAAAATTCACTGGAGTACACCCACATGCCAATATAATCTTCTTGGTATCTTTTTGGGATGGT
GAACTGATTGCATATGATCTGGATCATCATGAGA-GCACTGTTGTATATCACATT------CACCCTGACTATGAGAGGT
CTAGGCCATTTCTCCCATATGTGTCATTGCTGTCCCGCCTACCAGAGGATGGAGGAATGCAGTTGGCAACACTCCAAATT
GATGAATGATGTTCTGCTGATAAAAAAAATAGGCAGCCATGGGTGAGATGCTCTGTTGCGTTTTCGAGTGAAATCTTCAC
AAAGATTCAGATGGAGATGGTGTGTTGTTCATGGATAATGCAAAATTTAGTTTTTATGGTCTGATCTGTACTCCTTTTCA
TGTCTAATGTAGTCCCTGGTGTGTAGCTGTATGAGACACTTCGGTGTGTCCCTGTTCGGCTAAGCCAGAATTGTTTATGT
TCTATGTGAGATTTCCTCGCAGTATGATTTAGGTATACATGCCATGTCTTCTGGATAAGCCCTTCTACATGTGCTGACTG
CCATTGCAGTATGGGTTACATTAGTGGAAAAGGCCTAAGTGCCCTTTGTTTTAGATCAGTACACAATTTTTATTGCTGGC
TTCTTTTGTCATGCTTAGATTGGTGGCATAATTTCAAATGAAATGTTATTGTTACCTCTGAAAATTTAAATAAACACAGC
TGTACTGTAATGTTTCACTTTTGTTTGATGGGCTCCTATTAATTATTCCACATCAGTCTATAGAAGCAGTTATCCTCGTC
CTCTGCCGCTGCGAGGTGCGCCTCGCCGCCGCCCTCGTCCTTCATCTTGAAAATTCTGTTTTAAGCAGTGAGGGGACCAA
TTTCACGTTTTCGCAATAGAAATGGTGTTCTTTTAGTGGAAGAACATCGTTGCAAATCTGAATTTCATTTCCTGAAAATG
CTAGTCGACTCTTGTCATGCTTTGATTTAAAATTTGTTACTTGATAGGATTAGGAACTAGGAAAATCTGGGTTAGTTCAG
CTCAGACAGGCTAATTCATTTGGCATATCACCGCAGGCATTGCATACTGAAACCCTACAACCTTTCTATTGCATTGTGAG
TCATCTTGCTTGGATAATACTAGTATGTACTCAACTGGAAACCCCAATGTAAATTTTTTGAAATCAAACAGAGAAATAGC
TTTGTTGATCTAGATTTGACTGTTGAAGATGAGATGGGCTGGGGTTATG
>chr7B_983
CAGCCGCCT-----------------------------------------------------------------------
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---------------------------------CCAAGCTATGGAGAAGCCAGTGAAGGTGCCGATGTCCAGGCTCACCG
ACGACCTAATCGCGGAGATCCTCTCTCGGGTGCCCTACAAATCACTCTGCATCTGCAAGTGTGTGTGCC----CGGCCTG
GCGCGACCTCATCGCCGACCCCGCGCACCGGAAGAAAGTTGTGCAGACCCTGGCCGGCTTTTTCTACCGCATCACCGGCG
AGGTCACGGCCGTCAAG-------------TACGCCGACCTGTCCGCCTTCCCCTGGTCGAGCGTTCCCAAGACCTACCC
ACGCCTGCCACTGCCAACTGACAACAATTTCTTCTCTCTTGAGGATTCCTGCGATGGATTGTTTCTTGCCCGCATTCGGA
CGGGCACCCC------------TGCTGGAAAATTTCGCTACATGGTCTCCAATCCGGCCACGAATGAGTACACTGTGCTG
CCTGACTCTGGCTCCGCCGGCAACATCTGCCTTGCTTACCTGGGTTTCGACAGTGATGTTTCCACTCAAGAGTTTCATGT
GTTCGAGTTTGTACTGGTCCTCCGTGAGCCATCCCTGGTTGTGAGGGGA------GTGAATATTTACTCTTCAAAAACTG
TTGCATGGGTAGCAATGGAACCCAAATGGGACATCCAAGTTACGTTGTGCTGGCGTAAACCAGGAGTTTTCCGTAAGGGG
TTTCTGCACTTGCTGATAGGTCAGTTTGGGTTGGCAATACTTGATGCAGAAGGGCTAACA-------TGGAGAATTATCC
CGCTTCCAGTTGTAGAAAGTGTTAATCCGTGTTTCTCCGGATTCATTGGAAAGTCTGCCGGACAGCTAATTTATATCGAC
CGCGGTGCTATTGAAGGACACGGCTCTAATGCATTGTTGACTATATCAGTTTACGTTCTTGGTGCTGAGATATGTCAGTG
GGATGTGACTCACCTGGATGACAAGTGCATGCGTTGGAAACTCTTGCACAAGCTTTCAAATGTA-CTCCGAAGAAGATGT
TTCGGCTCTGTTTCAACCTCGAAGTCATTGCAGTACACCCACATGCCAATATAATCTTCTTTGTAGCTCATTGGAAGAAT
GAACTGGTTGCATACGATCTGGATCGTCATGAGAAGCACAATTGTGTATCACATTCACATTGAGCCTAACTACTGGCAGT
TTATGAATTTTTTCCCATATGTTCCATCGTTGTCCCGCTTACCACTGGATGGAGGAATACAGCTGGCAAC--TCCAAATC
AATGAATGTTCTGCTCATT----AAAAGTTGGGCAGTCAGCGGTGAGGTGCTCCGGTGTGTTCTCAAGAGTAATCTTCAC
AGAGATTCAAATACAGATGATATTGTTT---TGGAAAATGCTAACTTCAGTTTT--------------------------
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>chr7A_1382
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--------------------------------------TACATGGTCTCCAATCCAGCTACGAGTGAGTACACTGTGCTG
CCTGACTCTGGCTCCGCCGGCAACATCTGCCGTGCTTACCTGGGTTTCAACAGTGGTGTTTCCACTCAAGAGTTTCATGT
GTTCGAGTTTGTACTGGATTG------GCCAGACTGGACTATGACAGGA------GTCAACATTTACTCTTCAAAAACTG
GTGCTTGGGTTGCAATGGACCCCCAGTGGGACATCCAAGTTAGGCTGTGCTGGCGTGAACCGAGAGTTTTCCGTAAGGGG
TGTCTGCACTTGCTCATACGTCAGTTTGGGTTGGCAATAGTTGACGCACAAGGGCTAAACTGGAGAGTGGAGAATCATCC
AGCTACCAATT------AGTGTTGATCCATTTTCCTCCGGATTCATCGGAAAGTCTGCCGGACAGCTAGTTTATATCGAC
TCCGGCGGCATTGAAGGGCACGGTTCTAATGCATTTTCGACTATATTAGTTTACGTTCTTGGTGTTGAGATTTATCAGTG
GGATGTGACTCACCTGGATGACAAGTGCACGCGTTGGAAATTGCTGCACAAGCTTTCAAATGTAGCTCCAAAGAAGATTT
TTCGCCTTGGCTTTGACCTCGAAGTTATTGCAGTACACCCACATGCCAATATAATCTTCTTTATGGCTCATCGGAAGAAT
GAACTGGTTGCATACGATCTGGATCATCATGAAA-GCGCAATTGTGTATCACATT------GAGCCTAACTACCAGAAGT
CTATGGCCTTTTTCTCACAT------------------------------------------------------------
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>chr7D_1670
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------CACTTGCTGGTAGGTCAGTTTGGGTTGGCAATAGTTGATGCAGAAGGGCTAAGA-------TGGAGAATCATCC
CGCTACCAGTTGTAGAAAGTGTTAATCCGTGTTTCTCCGGATTCATTGGAAAGTCTGCCGGACAGCTAATTTATATCGAC
TGTGGTGGTATTGAAGGACACGGCTCTAATGCATTGTCGACTATATCAGTTTACGTTCTTGGTGCTGAGATATGTCAGTG
GGATGTGACTCACCTGGATGACAAGTGCATGCGTTGGAATTTCTTGCAGAAGCTTTCAAATGTAGCTCCAAAGAAGATGT
TTCGGCTTGGTTTCGACCTCGAAGTCGTTGCAGTACACCCACATGCCAATATAATCTTCTTTGTAGCTCATTGGAAGAAT
GAACTGGTTGCATATGATCTGGATCGTCATGAAA-CCACAACTGTGTATCACATT------GATCCGAACTACCGGCAGT
TTATGAACTTTTTTCCATATGTTCCATTGTCGTCCCGCGTACCACTGGATGGAGGAATACGGTTGGCAAC--TCCAAATC
AATGAATGTTCTGCTCATT----AAAAGTTGGGCAGTCAGCGGTGAGGTGCTCCGTTGTGTTCTCAAGAGTAATATTTAC
AGAGATTCAAATACAGATGATATTGTTT---TGGAAAATGCCAACTTCAGTTTT--------------------------
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>SNPs
SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----------S---S---S----S-S--S----------
---------S---------------S--S------------------S--------S--S-S-------SSSS-------
-----S-S-----S-----------SS-----S--SSS-S-S------------------S---S--SS-S------S--
-SSSSSSS-S-SS-SS-SSSSSSSSSSSSS-----------S---------------S-------S------S--SSS--
S-S-SSS-SS--------------------------S-SS----------S---S---S----S--SS-----S-SSSSS
-SSS-SSSS-SSSSSSSSSSSS--S--S---S----SS-----------------------SS-S--S---SS-S-----
---S----S----S-S-----SS-SS-S----------------S------S-S----SSS----S-------------S
------------SS----SSSSSSSS--SSS-S---SSSSSSSSSS-SSSSSSSS-----------------SS------
----------S----S----SS-------S--SS-SS-S----S---S--SSS---S-S--S-----------S------
---------------SS--S-----S--S---------S--------S--------S-----------------S-S-S-
----S----SS------SSS---------S-SS--SSSSSS--------S-----------SS----SS-----------
---S---S-SS-S------SS-----SS--SS-S----S--S-----S-----S-S----S------SSS--------S-
-----S-S--SS--SS-------SS-S-S---S----S---S-----S---------------S-------S-----S--
---S-S---S---S-SS--SS--S---S--S------------------------------S---S--SS----S-SSS-
------S--------------------------------SS----S---------------S-S---S----SS---S--
---S-S-S---S----------SS-----S--------S-----SS------------S-----------SS-------S
S-------S-S-S--SS-SSSSS----SS-S-----S--SS------S-----S----S---S--S--S-S---------
-S-------S--SS-----S-S-SS-S-SSS----S-----S--S--S------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_882
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--------------------------------------------------------------TGGGCCTTGTCTATCCCG
TA------------------------------------------------------------------------------
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>reverse_2004
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---AGGTCGACTTGGCGCTAAAA---------------------------------------------------------
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>forward_1871
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-----------TCAAGGACGGGGCTCAGATA-------------------------------------------------
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>reverse_3063
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----------------------GCATATCACCGCAGGCATTG--------------------------------------
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