>input_sequence_57376
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-------------------ACATTGCAATC--------------------------------------------------
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------------------------------------------CACCGCCGCCGCCGACGACGACCGCACACACGGACAGA
ACAGAGAGTCAGGGACACAGCGACACAGACAGGGTTGAGTCGAGGGGAAAGGTGGTACGACGACATGGACGTGCACTCGG
CGCCGGTGGCGGCGAGGCGGATGTGGGGGTACCTGCGGGCGGTCTTCTTCATGATGCGCAAGGGCAAGCGCAAGCTGCTC
CTCGGCGCGCACCTCCTCATGAAGCGCCGCAACAAGGCCGTCGCCCGCTCCGTCGCCAACCTCCTCTCCCACCACCACCA
CCACG---------G---CGGCCGCGCGCTCCGCCGCCGCGAGTACGAGTTCTCCTGCGGCGACAGCCCCGACCCGGGCT
CCTTCTCCATGCGCCGCCTCGCCTTCCCCTGCCTCGGCGCCG---------ACGCCGACGAGCCCGGCCGCCTCCGCGCC
GAC---------CCCGCCACGCCGCCGCGGCACATGATCGAGTACTACGCCAACGCGGCGGCCGCGTCCCCCGCGCCGTC
GTCGCCCGGGGCGCTGATGATGATGCACGAGGAGTCCGGGCTCGCGCTGGGGGAGGAATGCACGCCGGCGGGGATGTCGC
CGCTGGTGCCCGGCGCGGCCGACGGCGGGTTCTCGGTGCGGGTGTCCAACTTCTCGTCGGACGAGGTCGACGCGGACCAG
CTTGGA---GGCGAGGCCGTGGACGACGAGGCGGAGGAGTTCATCGCCCGCTTCTACGCCCAGCTGCGCCGCCAAAACCA
GACCGGGCTGCTCCCATACTACCTCCAGGAAGCCGCCGCGTGATCGGCGTGCCGATGAAGTTGCCTACCCTCGACGGCAT
TGTCCGGCGGGGCCTGCCGGAGATCGATTCCATGATTGCTTGGACG------GGCGACCGTGCGCACGCAACGTACGGCG
CATGCATG----CTTGTCCATGGCTGGCATGCGTGTGTCGGGGGACAGGAATGGAATACGTCGTGGGCACGAATGTGTAG
CAGTTACATCATCATGTATATACATGCACGTACGTACGATTGCGCATGCGTGACAGCGTGGGCATGCATGTACCCTCTTC
TTTTTCTGCATGTATGTATGTATGTCAGTGTAAAGATGTG---GATCGGGTCCTGGATGGTTTTTAGTTACTGGGACTAA
GTAAAGTTTACTTTGCATACTGTATATTCATTCTATG---TGTGGTTACT------------------------------
--CTTGATCAATTCATATGTATCATCCGCTCGCAAAAAAAATTAAA----------------------------------
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>chr3D_1_TraesCS3D01G439700
CAGAGCACCGGAGCGGGAGAGGAAGGAGGTGGATGGGCTCGGACTGGCGGCGCGGAGAGAAGGGAGGTGGATGGGTTAGG
GTTGCGGGACGCCGGGCGGCTTAAATAGCCGAATTTGGTCTTGGGCGGCGAGCCGAAGCGGCGCCACGCGACGACGAACC
TGACGTTTGTCGGACCGCCGGGTTTCCAGGTGTTTCCACGTGGGACCCTGTCGTCAGCCCGACGTGGTGGGCATGCCTGG
GCGTTTGAGGCCCGTCTAAGGAGCCCGCATGGGTCAAGAAAACGTGACCGGACACTGACTGGACTGCCCGCCCGGACGTA
TGAGACGGATTTGAGAGGTCGGGGTATAGATGCTCTCACACGAACAACCATGGTGGACTCCTGATGCCCTGTGCTCTGTT
CTGCGCATCTTCACACGCGTTCAGTGTGACACTGTAGTAGTAGCATGCAGCTGTTTTCTTCTGTTGGGGTTGG-------
-TCTCTGCGTGAAGGATTAATTCTTACCGATACTAGT-------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------AGTTAACGAAGCATTCATCCAAAGAT
A---------CCAGCACACTTGACTGCTGGGTCGCATAGTAAACGGTGCATGTGTACGCAATG-----TCTACCAGCAAT
CTGAACTTGTCTGAACCACGGAGCAAGGTCAGAAGGATAGCGAAGAGAAGAAGGCATCTGTGCTTGTGCGATCCCCTGCT
TAC--GGGCCTCGCTTTGCCCCCCACCGCCCGGCAACGGC---------CCTTCCCCAC----CTTCCCAAG----TTGG
GCAGCGCGAGTGGATCGGTGGAGCACGCGAGCGCAAAAGGAGGAAAGAAAAGCGAGC-AGGAAGAAGAAGAAGCAGCCGA
GCCAAGCCAAGCCAAGGCGCCACCTAACCAAAATCTTATTATTATCCGAACGTCCAACTCCCCGGACCCGGACCTGTTTT
CTCCCCTGCCTTCCTGGCTAAGCGAAGCCTCCATTCCTTCCTCCTCCCTTTCAACCCCCGTGCCTATATATACCGGCACC
ACCACCGCGGCCCAACTCCACATTGCAATC--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------CACCGCCGCCGCCGACGACGACCGCACACACGGACAGA
ACAGAGAGTCAGGGACACAGCGACACAGACAGGGTTGAGTCGAGGGGAAAGGTGGTACGACGACATGGACGTGCACTCGG
CGCCGGTGGCGGCGAGGCGGATGTGGGGGTACCTGCGGGCGGTCTTCTTCATGATGCGCAAGGGCAAGCGCAAGCTGCTC
CTCGGCGCGCACCTCCTCATGAAGCGCCGCAACAAGGCCGTCGCCCGCTCCGTCGCCAACCTCCTCTCCCACCACCACCA
CCACG---------G---CGGCCGCGCGCTCCGCCGCCGCGAGTACGAGTTCTCCTGCGGCGACAGCCCCGACCCGGGCT
CCTTCTCCATGCGCCGCCTCGCCTTCCCCTGCCTCGGCGCCG---------ACGCCGACGAGCCCGGCCGCCTCCGCGCC
GAC---------CCCGCCACGCCGCCGCGGCACATGATCGAGTACTACGCCAACGCGGCGGCCGCGTCCCCCGCGCCGTC
GTCGCCCGGGGCGCTGATGATGATGCACGAGGAGTCCGGGCTCGCGCTGGGGGAGGAATGCACGCCGGCGGGGATGTCGC
CGCTGGTGCCCGGCGCGGCCGACGGCGGGTTCTCGGTGCGGGTGTCCAACTTCTCGTCGGACGAGGTCGACGCGGACCAG
CTTGGA---GGCGAGGCCGTGGACGACGAGGCGGAGGAGTTCATCGCCCGCTTCTACGCCCAGCTGCGCCGCCAAAACCA
GACCGGGCTGCTCCCATACTACCTCCAGGAAGCCGCCGCGTGATCGGCGTGCCGATGAAGTTGCCTACCCTCGACGGCAT
TGTCCGGCGGGGCCTGCCGGAGATCGATTCCATGATTGCTTGGACG------GGCGACCGTGCGCACGCAACGTACGGCG
CATGCATG----CTTGTCCATGGCTGGCATGCGTGTGTCGGGGGACAGGAATGGAATACGTCGTGGGCACGAATGTGTAG
CAGTTACATCATCATGTATATACATGCACGTACGTACGATTGCGCATGCGTGACAGCGTGGGCATGCATGTACCCTCTTC
TTTTTCTGCATGTATGTATGTATGTCAGTGTAAAGATGTG---GATCGGGTCCTGGATGGTTTTTAGTTACTGGGACTAA
GTAAAGTTTACTTTGCATACTGTATATTCATTCTATG---TGTGGTTACT------------------------------
--CTTGATCAATTCATATGTATCATCCGCTCGCAAAAAAAATTAAAATTCATATGTATCATCAATATATATCTTGTTCCC
AAT-------------------------------TATGAGATAGTAGTAT-----------------AAGTCAAAGGGTA
A-------ATGTGTTTAAGGTCCTTTTTC---------------------------------------------------
--------------------------------------------------------------------------------
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--------CAATACGAGAAAGATGCACACACATGAGCATGAAAAAGGGGTATGAAGGGCCCTCCATGTAGGGTTGGGAAG
AGATGTTTTAGGC------------ATTGCTACTTGGAATATGTTTTTTCCTTTGCATTTTTTTTGTGTGAAACGGGTAT
GGATCTATTATAAAAGTTCATCAGGAGTGCAAATCATCTCAAACATTAAAAAAGTACATCAAGCTCTCTGGACCACTAAA
CGGCCATTACCGATGTCAGAACCATTGAAATTTTGGAAACTTGGGTCATTTCAATAGATACTGGAATAATTACATTGCAG
TGAAAGTATTTCAAG---------------AATTGGGGTAAAAAAAACTTTTAATTGTTTTTTGAAGTGTCAAAATACTT
AGTTGGATGTCAATCAAATTCAAGTGAAATTTTGGGTCTTCTAGTCGAAATGATAACCAAAACCATTGAAAG--------
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--CGATAAATGCAAAGAATA---ACTAGAACTGTATTTTCCTCTTAGCAGGA---AAACGCAGTCCCCCTTGCATGCTTG
ATGATAGATGATTAATATTC---CTAATCTCTTCGTGAAGAAAAAAAATGTTCTCTTCATCTGCACTGTCCTCTGCT---
---------------------------TGGCTACGTGCTCTCAGTATTGTTCGCTCCGCACCTTCCATCGGACAGCAGCA
CAGTACTGTCGTTTGGTGGACGGCAGCGGCGG-TACAGTGCAGGGCTGGGCAATGATCAACGAGCAGCCCCGATTTATAT
AAACCCCAGGCCAGCTGTAGCTTAATGAAGATTTTGGCAAAGCTGTGCCCACACATAAAAAGTAAGTTGATCTACTGCAC
ATAATTGGCACTAGTTAAC----ATATATCGTGCGTGCTGAAGCAGCAGTGCTACCTAATCCGGGGCAACCCGCGGAGCC
ACCATAATCAAAGGGTTTTATTAGTGTGCAACAAAGGAACA
>chr3A_1
CAGAGCGTCGGAGCGGGAGAGGAAGGAGCTGGATGGGTTCGGACTGGCGGCGCGTAGAGAGGGGAGGTGGATGGGTTAGG
GTTGCGGGACGCCGGTCGGCTTAAATAGCCGGATTTGGTCTTGGGCGACGAGTCGAAGCGGCGCCACGCGGCGACGAACC
CGACATCCGTCGAACCATCGGGTTTCCGGGTGTTTCCACGGGGGACCCTGTCGTCAGACTGACGTGATGGGCATGCCTAG
GCGTTTGAGGCCCGTCTAAAGAGCCCATCTGGGTCAA-AAAATGTGACCAGACATTGACCGGGCGGCCCACCCGGATGTA
TGAGATGGATTTAAAAGGTCCGGCTATAGATGCTCTCACACGAACAACCATGGTGGACGCCTGATGCCCTGTGCTCTGTT
CTGAACATCTTCACACGCGTTCAGCGTGACACTGTAGTAGTAGCATGCAGCTGTTTTCTTCTGTTGGGGTTGGTCTCTGA
CTCTCTGCGTGAAGGATTAATTTTTACCCATAGTAGTTAACGACGGAAAGTCCTTTCTCAGCCCGAGCTCAAATGAGCTC
GGGTGAACAGTAAAATCAAAAAACATTTTAAAAATGTTCAAAAAATTCTGAATGTTTTTTGTGGTAAACATTGACAAATA
TTCTAACTGCTTGCAAAATTTCATCTTCATATCACATTCGTATAAGGCGTGGCAAAAAAAACAAAATCAGTGCTCCGAAA
TGCTTTGAAAGTAGCATTTTCAGAGCATCGATTTTGTTTTTTTTGTCACCCCTTCCACGAATGTGATCTGAAGATGAAAT
TTTGCAAGCCGTTAGAACATTTGTCAAAGTTCATCACAAAAAAAAATCAGAATTTTTTGAACATTTTTAAAATGTTTTTT
GATTTTACTGTTCACCCGAGCTCATTTGAGCTCGGGTGTAGATACTCCACGTCCAGTTAACGAAGCATCCATCCAAAGAT
A---------CCAGCACACTTGACTGCTGGGTCGCATAGTAAACGGTGCATGTGTACGCAATG-----TCTAGCAGCAAT
CTGAACTTGTCTGAACCAAGGGGCAAGGTCAGAAGGATAGCGAGGAGAAGAAGGCATTTGTGCTTGTGCGATCCCCTGCT
T-C--GGGCCTCGCTTTGCCCCCCACCGCCCGGCAACGGC---------CCTTCCCCACCTTCCTTCCAAGTTGGCTTGG
GCAGCGCGAGTGGATCGGTGGAGCACGCGAGCGCAAAAGGAGGAAGGAAAAGCGAGCGAGGAGGAAGAAGAAGCAGCCG-
----AGCCAAGCCAAGGCGCCACCTAACCAAAATCTTATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCGCCGCCGACGACGACGAACAAACACACGAGC-GA
ACAGAGAGTCAGAGGCACGGCGACACAGACAGGCTTGAGTTGAGGGGGAAGGTGGTACGTCGACATGGACGTGCACTCGG
CGCCGGTGGCGGCGAGGAGGATGTGGGGGTACCTGCGGGCGGTCTTCTTCATGATGCGCAAGGGCAAGCGCAAGCTGCTC
CTCGGCGCGCACCTCCTCATGAAGCGCCGCAACAAGGCCGTCTCGCGCTCCGTCGCCAACCTCCTCTCGCACCACCACCA
CCACGGTCACCACGG---CGGCCGCGCGCTGCGCCGCCGCGAGTACGAGTTCTCCTGCGGCGACAGCCCCGACCCGGGCT
CCTTCTCCATGCGCCGCCTCGCCTTCCCCTGCCTCGGCGCCGC---CGACGACGTCGACCAGCCCGGCCGCCTCCGCGCC
GAGCACCCCGCGCCCGCCACGCCGCCGCGGCACATGATCGAGTACTACGCCAACGCGGCGGCCGCGTCCCCGGCGCCGTC
GTCGCCCGGGGCGCTGATGATGATGCACGAGGAGTCCGAGCTCGCGCTGGGGGAGGAATGCACGCCGGCGGGGATGTCAC
CGCTGGTGCCCGGCGCGGCCGACGGCGGGTTCTCGGTGCGGGTGTCCAACTTCTCGTCGGACGAGGTCGACACCGACCAG
CTGGGCCTGGGCGAGGCCGTGGACGACGAGGCGGAGGAGTTCATCGCCCGCTTCTACGCCCAGCTGCGCCGCCAGAACCA
CATCGGGCTGCTCCCGTACTACCTCCAGGAGGCCGCCGCGTGATCGGCGAGCCGATGAAGTTACCTAGCTGCGACGGCAT
TGTGCGGCGAGGCCTGCCGGAGATCGATTCCATGATTGCTTGGACGTGGTGGGGTGACCGTGCGCACGCAACG----GCG
CATGCATGCTTGCTTGTCCATGGCTGGCATGCGTGTGTCGGGGGACAGGAAT-----ACGTCGTGTGCACGAATGTGTAG
CAGTTACATCATCATGTATATACATGCACGTACGTACGATTGCGCATGCGTGACAGCGTGG----GCATGTACCCTCTTC
TTTTTCTGCATGTATTTA--------AGTGTAAAGATGTGATACATCGAGTCCCGGATGGGTTTTAGTTGCTGGGATCAA
GTATGCTTTGC-------ATTGTAAATTTCATTGTATTCGTGTACGTGGTAACTTGATCAATATATGTTTATCAAAAAAA
AACTTGATCAATATATATGTGCATG------------------------------------CCATCTATATCTCACTTCT
AAC-------------------------------TTTGAGGTACTATTCCCATCCTATTCATATACCAAGTCCAAGGGTA
A-------ATGTATTTTAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAATACAAGAAAGATGCACAGATGGCGCTACCGCACATGTATGTACATGGAAAAACGGGCCCCAGTTTTATT
TTATTTGAGTTGAACCAGCCTCCGAATTGGTAGTGGGAATATGGTTTTCACTTTCA------------------------
--------------------------------------------------------------------------------
--------------GTGAAAATTATCGAAGTTTTGCAAATTTCAGTCACTTCG-----TTATGAAATAATTACCTTTTGG
TCAGAATATTTCATCATACTACACAAATTCAAATAATTTCTAAAGTATTTCCATTTTTTTTAATATTCATC---------
AGTTGGATTTCAATCAAATTTAAGTGAAAATTGTGGTCCCTTCGCCGAAATGAAAACCAAGGAAACGCTAAATTCGGTGA
AAATCAGTAATATCGGCC-------ACGCCAAATATATGATATGGC-----ATTCAAAACCCCTAAAAATGCAACTTCTA
ACACTTATCAGCAGTCAGAGGTTTGA------GTGTGCTGAGATGCTTTAATCAACTAG--------GTGCTAAGGAGCC
CTCGCTTGATACAGACGATA---ATTAGAGCTGTATTTTCTTCCCCATTAGTAGGAAACTCAGTTCTCCTTGCATGGCTG
ATGATATACGGTTAATAAATCTTCTAATCTCCTCGTGGAGAAAAAGAATATA-TCTTCATCTGCACTGTCCTCTGCT---
---------------------------CGGCTACGTGCTCTCAGTACTGTTCGCTCCGCAGCTTCCATCGGACAGCAGAA
CAGTACTGTCGTTTGGTGGACGGCAGCGGCGG-TACGGTGCAGGGCTGGGCAATGATCAACGAGCGGCCCCGATTTGTAT
AAACCCAGGGCCAGCTGTAGCTTAATGAAGATTTTGGCAAAGCTATGCCCACATATAAAAAGTAAGTAGATCTACTGAAC
ATAATTGGCACTAGTTAAC----ATATATCGTGCGTGCTGAAGCAGCAGTGCTACCTAATCCGGGGCAGACCGCGGAGTC
ACCATAATCAAAGGGTTTTATTAGTGTGCAACAACGGAACA
>chr3B_354
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---------------------------------TCTCACACGAACAACCATGGGGGCATG-TGATGCCCTGCGCTCTGTT
TTGCGCATCTTCACACGCGCTCAGTGTGACACTGTAGCGATAGCATGCAGTTGTTT-CTTCTGTTGGGGTTGG-------
-TCTCTGCTTGAAGGATTAATTCTTACCGAAAGTAA--------------------------------------------
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--------------------------------------------------------TTAACGAAACATTCATCCAAAGAT
AGATACGTAGCCAGCACACTTGACTGGTGGGACCCACAGTAAACGGTGCATGTGTATGTAGTAAGTAATCTACCAGCAGT
CTGAACTTGTCTGAACCAAGGAGCTCGGTCAGAAGGATAGCGAAGAGAAGAAGGCATTTGTGCTTGTGCGATCGATCCCC
TGCTTGGGCATTGCTTTGCCCCCCACCGCCCGGCAACGGCACGGCCCGCCCTTCCCCACCTATCTTCCCAAG----TTGG
GCAGCGCGAGTGGATCGGTGGAGCACGCGAGCGCAAAAGGAGGAAAGAAAAGCGAGCGAGGAAGAAGAAGAAGCAGCCG-
----AGCCAAGCCAAGGCGCCACCTAACCAAAATCTTATTATTATCCGAACGTCCAACTCCCCGGACCCGGACCTGTTTT
CTCCCCTGCCTTCCTGGCTAAGCGAAGCCGCCATTCCTTCCTCCTCCCTTTCACCTCCCGTGCCTATATATACCGGCACC
ACCACCACCGCCCAATTCCACATTGCAATC--------------------------------------------------
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------------------------------------------CATCGCCGCCGACGACGACGACCACACACACGAGC-GA
CCAGAGAGTCAGGGACACAGCGACACAGACAGGCTTGAGTGGA-GGGGAAGGTGGTACGACGACATGGACGTGCACTCGG
CGCCGGTGGCGGCGAGGAGGATGTGGGGCTACCTTCGCGCCGTCTTCTTCATGATGCGCAAGGGCAAGCGCAAGCTGCTC
CTCGGCGCGCACCTCCTCATGAAGCGCCGCAACAAGGCCGTCGCGCGCTCCGTCGCCAACCTCCTCTCCCACCACCACCA
CCACCACGGCGGTCACCACGGCCGCGCGCTCCGCCGCCGCGAGTACGAGTTCTCCTGCGGCGACAGCCCCGACCCGGGCT
CCTTCTCCATGCGCCGCCTCGCCTTCCCCTGCCTGGGCGCCGCGGACGCCGACGCCGACGAGCCCGGCCGCCTCCGCGCC
GAC---------CCCGCCACGCCCCCGCGGCACATGATCGAGTACTATGCCAACGCGGCCGCCGCGTCCCCGGCGCCGTC
GTCGCCCGGGGCGCTGATGATGATGCACGAGGAGTCCGAGCTCGCGCTCGGGGAGGAATGCACGCCGGCGGGGATGTCGC
CGCTGGTGCCCGGCGCGGCGGACGGCGGGTTCTCGGTTCGTGTCTCCAACTTCTCGTCCGACGAGGTCGACGGCGACCAG
CTGGGCCTGGGCGAGGCAGTGGACGACGAGGCGGAGGAGTTCATCGCCCGCTTCTACGCCCAGCTGCGCCGCCAGAACCA
CATCGGCCTGCTCCCGTACCACCTCCAGGAAGCCGCCGCGTGATCGGCGAGCCGACGAAGTTACCTAGCCACGACGGCAT
TGTCCGGCGGGGCCTGCCGGAGATGGATTCCATGATTGCTTGGACG------GGTGACCGTGCGCACGCAACGTACGGCG
CATGCATGCTTGCTTGTCCATGGCTGGCATGCGTGTGTCGGGGGACAGGAAT-----ACGTCGTGTGCACGAATGTGTAG
CAGTTACATCATCATGTATATACATGCACGTACGTACGATTGCGCATGCGTGACAGCGTGG----GCATGTACCCTCTTC
TTTTTCTGCATGTATGTATGT----CAGTGTAAAGATGTGATGGATCGAGTCCCGGATGGTTTTTAGTAGCTGGGGCCAA
GTGTACTTTGC-------ATTGTAAATTCCTTGTATT---TGTATGTGGTAATTT-------------------------
AACTTGAACATTTTATATGTGCATG------------------------------------CTATCTATATATCTCACTC
GTTTTTCACCTAAGAAATAAATATATCTCACTCGTTTGAAGTACTATTCCCATCATATTCATATCCAAGTCCATGGTGAA
TGTATTCTATTTGTGTGAATTATTTTTGG---------------------------------------------------
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--------GAATACATCAAAGATGCACAGACGGCCCTACGGCACATGTACC----TGGAAAACCAGCCCCCAGTTTTAGT
TTATTTGAGTGGAACCAGCCCCCGAATTGGTAGCGAGAATATGGTTTTCACTTTCA------------------------
--------------------------------------------------------------------------------
--------------GTAAAAATTATCGAAATTTCAGTAACGTTGGTTTC-----------------------------GG
TCAGAATATTTCATCAGTCTACACAAATTCAAATAATGTCTAAAGTATATCCAATTTTTTTTTTAAAAAAG---------
-GTTGGATTTCAATCAAATCCAAGTGAAAATTCTGGTCCCTTGGCCGAAATTAAAAAAAAAACTT--CTAAATTCAGTGA
AAATCAGTAATATCACCTTTCACCTACGCCAAAAATATTGCTGAAACCGAGATTCAAAACCCCCAAAAGTGCAACTTCTA
AACAGTCTCGAGGGTTTTTCACTTTTCGGACGGTTTGCTGAGATGCTTTAATCGACTATAGGTGCTTGTGCCAAAGAGCA
ATCGCTAGATACAGACAATCATTATTAGAGCTGTATTTTCTTCTCCATTAGCAGGAAATCCACTTCCCCTTGCATGGCTG
ATGATACATGGTTAACAAATCTTCTAATCTCCTCGTGAAGAAAAACAAAATA-TCTTCATCTGCACTGTCCTCTGACTGG
CTACGTGTTCTCAGTATGCCCTCTGTCTGGCTACGTGCTCTCAGTATTGTTCGCTCCGCAGCTTCCATCGGACAGCAGAA
CAGTACTGTCGTTTGGTGGACGGCAGCGGCGGGTACAGTACAGGGCCGGGCAATGATCAACGAGCAGCCCCGATTTGTAT
AACCCCCAGGGCCAGTGTAGCTTAATGAAGATTTTGGCAAAGCTGTGCCCACGTACATAAAGTAAGTAGATCTACTACTG
AACATATATATTAGGATCATAGTATATATCGTGCATGCTGAAGCAGCAGTGCTACCTAATCCGGGGCAAACCGCGGAGCC
ACCCTAATCAAAGGGTTTTATTAGTGTGCAACAA-------
>SNPs
------SS--------------------S--------S----------------S-----S-------------------
---------------S---------------S---------------S----S-----------------S---------
S---S-SS----S---SS---------S------------S----------------S-S------S-----------S-
-------------------S------SSS--------S----S------S----S----S--S-S----S------S---
-----S------S-S-----S--S--------------------------------------------------------
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--------------------------------S-----------------------------------------------
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------------------S--------------------------------------S----------------------
-S------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSSS----------------------------------------------------------------------------
-----------------------------S-----------------------S-S------------------------
------S-S------S----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------S-----------S--------SS-S--
---------------------------------S------S------S--------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------S-----------------------------------
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-----------------------------------------------------------------------S--------
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------------S------
--S--S--------------------------------------------------------------------S-----
S-S------------S---------------------------------S------------S----S--S---------
------------------------------------------------------S-------------------------
----------------------------------------------------SSSSS--------S--------------
-------------------------------------------------------------SSSS---------------
---------------------SSSS-----------------------S----S---------------S-------S--
---S-S---S-SSSSSSS-S----S----S--S---S------SSS-SS-------------------------------
-------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S--S-------SSS----
-----------------------------------S----S--S--S-SS------------------------------
----------------S-S--SS----SS---------------------------------------------------
--------------------------------------------------------------------------------
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--------------S-------------S--SSSSSS-S-SS-S-S-SS-S-SS-S--SSSS---S-SSSSSS-SSS-SS
SS--S-SSSS--S----------------S--S-S--------S----SS----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--S-S--SS--S----------------S-----S---SSSSSS-SS--S---------S--SSS-
-S-S-S-------SS-----------------S-SSS--SS---SS-S--SS----S------S--SSS--SSSSSSSSS
--------S--------------------S--SS----SSS-S-S--------S---------S-SSSS--S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S--S--S--S-S--------S----S----------S---SSSSSS-S-------S----S-----------SS--
------S---S------SSS-----------S-------------S---S-SS---------------------------
------------------------------------------------------------S-----------------S-
----------------------------------------------------------------------------S---
-----------------------------------------------------S-------------S------------
---------------------------------------------------------------------S----------
----------------------------------S------
>forward_1122
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--------------------------------------------------------------CTTGTGCGATCCCCTGCT
TA------------------------------------------------------------------------------
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>reverse_3668
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-------------------------------------------------------------------CTGGACCACTAAA
CGGCCAT-------------------------------------------------------------------------
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-----------------------------------------
