>input_sequence_57306
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--------------------------------ATGGAGGACTTCGTGCTGAGCTACGTGGTGACCGGGCTGGCCTTCTGG
TCGACGGCGTTCCTGGTGATGCGGGCGCTGATGCCGAAGCGGTCCTACGAGTTCTGCAACCGCGCCGTCTCCACCATGCA
CGCCGTCGCCGCCGTCTGCATGGCCTGCCTCTCCGTCCAGGAGTGGTCCTGCCCCGTCTGCCCCCTCAACGCCCCCTCCT
CGCCGCGCCAGGTACGCG------------CCGCCACCGCACACCGCTGCGCTCGCTGATCCGTGATACACGCGCGCGCA
TGCACTGACTCCGTCCTCCTTCCT-------GTACGCACGTTCGTGTGTCCGTCGAATCGACAGATGAAGTCTCTGGCGG
TGACGCTGTCGTACATGATCTACGACGCGGCGTGCTGCCACCTCAACGGCGACGTGCGGCTGGACAACACCGTGCACCAC
CTGGTCAGCATCGTCGGCATCGGCGCCGGCCTGGCCTACCAGAGGTGCGGCACGGAGATGATGGCGTGCATGTTCATCAC
GGAGATCTCCAGCCCGCTGCTGCACCTCAGGGAGATGCTCAAGGAGCTCGGCGTCAAGGACACGGACCTCAACCTCCTCG
TCGATGTATACACAGACAGACCTCAGCC-------TCTTCTTCTTC-------CT-------------------------
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---------------------------------------CTCTCTCTCGTCTTCTGTGAACAGTACTATAATTAACTACA
TGTCTCTCTTCTCCGGAACCCCGCGTACGTGCAGATTCTGTTTGCGGCGACCTTTTCGGTGGGACGGATGGTTGGTGGAC
CGTACCTCACCTACGTAACCTTGACAACAGACTACCCCATCCTCATCAAGGTAT--TTTGTAACCAGAC--GCGCAGAAG
GACCAAACAAATCTCCCGCCGTTCCGCTCCCTAACGATCTCGAACCCAAATCTCAACTTCACCTCTCTCTTTTTTTTTGG
CACTTTTTTTTTGCCAAAAAAAAGTGTACCTATTTCAAACGCCAGCTATTCCCAACTTTTTCCGTATGTAGTGCTTACTT
TTCGAAATGTGTATTTCGACAATGGGTGCATATGCACGTAGGAGCAAAAGGGAATATCCGTTACTAAGTTCCTTTTCTGT
GATGTTATTTTCCAATTCGCCAGGCGATGGCTGCGGGTTTGCAACTGGTGAGCGCCTACTGGTTCTTGAGGATCCTCAGG
ATGGTCAGGTACAAGCTCGGGAAGAAGAGGCCGGCGGCGGCGGCGGCGACCAAGCTCAATGCCAAGTGA-----------
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>chr3D_1_TraesCS3D01G184300
TCCGACCGCGGTTAGGCGCACTCCTCCCGAGAGGGGTGGAGAGCCATGCGGACGGCCATCTCCTCCTCTTCCCTGCATGG
G--GAGGTCCCACTCGGCGGATCAGGAGATCTCTGAGTCGAATCCGTTACCCGCCATGTCAGAGAAGGCCGAAGATCGCC
GGAAAAGAGCTTGGGGGCGGAGTGGGTAGGGTTTCGTCCAGGATGTGAATAGGGATGATGAATATATGTGGGGTCGGAAT
GGGCCAGTGTGTGCTAGACCAGACGTGACGGACGCGCCCGGGCATGTCCGGGACTCCCCATATCCGCCCTAGATATGTGC
TGGATACAAGGGGTGCCAGTCAGCCTGGATGTACCGGGCCGGCATAAAGGGTGCGGCTGGGTCGCGATTTTGTGACATGT
CATGGACCGGACCGTCTGCCCGGACGAATAGGGTATATGTTTGAGTAGTCCAATTGTAGATACTCTCGGATAAAATCGTC
ATGATACCTCCAACAATTGTGTGTCATTTCCCTCAAAAATAAAACAATTGTGTCATAGGAAACATGTCAAAACTGGTTGG
GTTTGGAGAAGGAGAACACAAACCGCACGGGTGCTACAGTGCCACTCATCATCAG-------------------------
----AGTCAGGAACGAATTCGGCTGAAAAGAAGAGTCCGGAACGAATTAATCAGGCGGCGCTTTAAGTGCGCGTCAAATT
ATTT-----------------C-----------------CCAGCGGATTGGAGTTAGACCCGTATCCGTCCCCAACCGCC
CCCATTGAAACCTCTACTTCTTCTCTTCT-GTAATAAACGAAAAAGCTCAATCGCAACAGTATTCTACTCCGACTCCGCA
CCTGTCACTCACGCTGCCTCCGTGACCTC---GCTCCCTCTGCCCCTATATACTCCCGTCGCCGATTGCTCGACATCATT
GTTGTTTCTTCCTCCTTCCGCCAATCGATCGTCCCTCTATATCATAATAAT---CGTCGAGGCGAGGCCCCCGCGCCGCC
GCGCTGGGTCTGGGTGGGGACGTATCGAAACGATGGAGGACTTCGTGCTGAGCTACGTGGTGACCGGGCTGGCCTTCTGG
TCGACGGCGTTCCTGGTGATGCGGGCGCTGATGCCGAAGCGGTCCTACGAGTTCTGCAACCGCGCCGTCTCCACCATGCA
CGCCGTCGCCGCCGTCTGCATGGCCTGCCTCTCCGTCCAGGAGTGGTCCTGCCCCGTCTGCCCCCTCAACGCCCCCTCCT
CGCCGCGCCAGGTACGCG------------CCGCCACCGCACACCGCTGCGCTCGCTGATCCGTGATACACGCGCGCGCA
TGCACTGACTCCGTCCTCCTTCCT-------GTACGCACGTTCGTGTGTCCGTCGAATCGACAGATGAAGTCTCTGGCGG
TGACGCTGTCGTACATGATCTACGACGCGGCGTGCTGCCACCTCAACGGCGACGTGCGGCTGGACAACACCGTGCACCAC
CTGGTCAGCATCGTCGGCATCGGCGCCGGCCTGGCCTACCAGAGGTGCGGCACGGAGATGATGGCGTGCATGTTCATCAC
GGAGATCTCCAGCCCGCTGCTGCACCTCAGGGAGATGCTCAAGGAGCTCGGCGTCAAGGACACGGACCTCAACCTCCTCG
TCGATGTATACACAGACAGACCTCAGCC-------TCTTCTTCTTC-------CT-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------CTCTCTCTCGTCTTCTGTGAACAGTACTATAATTAACTACA
TGTCTCTCTTCTCCGGAACCCCGCGTACGTGCAGATTCTGTTTGCGGCGACCTTTTCGGTGGGACGGATGGTTGGTGGAC
CGTACCTCACCTACGTAACCTTGACAACAGACTACCCCATCCTCATCAAGGTAT--TTTGTAACCAGAC--GCGCAGAAG
GACCAAACAAATCTCCCGCCGTTCCGCTCCCTAACGATCTCGAACCCAAATCTCAACTTCACCTCTCTCTTTTTTTTTGG
CACTTTTTTTTTGCCAAAAAAAAGTGTACCTATTTCAAACGCCAGCTATTCCCAACTTTTTCCGTATGTAGTGCTTACTT
TTCGAAATGTGTATTTCGACAATGGGTGCATATGCACGTAGGAGCAAAAGGGAATATCCGTTACTAAGTTCCTTTTCTGT
GATGTTATTTTCCAATTCGCCAGGCGATGGCTGCGGGTTTGCAACTGGTGAGCGCCTACTGGTTCTTGAGGATCCTCAGG
ATGGTCAGGTACAAGCTCGGGAAGAAGAGGCCGGCGGCGGCGGCGGCGACCAAGCTCAATGCCAAGTGATCCATCCATGT
ACATACATATCTTGCTTGCAACCTTGAGCAAATTACTTGCTTTCTGGCGGGATGAGATCGATCGATCGATCATTTGTATG
TACAAA-CCCACAGTGTGTGCCCGATTTTGGCTAAGAAAAAAGGATTATTCATGTAGCATATTAATTGTTCCACAGGCAA
GCATCTTCCCAACAAAGGATGCATATATACATACTGTAGCAATTCA---------ACTCTTGTGCAGAAACACTTTCCGA
TCACTACCGCTTGCCTCCTAAC------TATTTTTAGAGGATTTTAGGCTTCTCTTCTTGCTGCTTATACAGTTGTTAGA
TTGGATCATTCTTGTTATAATTCGGTTTTGGTGTGTAATTCCAATGTGTAGATTGTACCTGCATTTTTTATACATGCATG
ACGTGCCCTCTGTTGATGCGCGTAGCTACTGGTGTTTTGCGTTGTCCCATTACAGTCCTTTTGAACTCCTAGTTTTGTTG
TTAGTAATCTGCTAGCAATAGGCGCCCGAACGAACCCCCTTTCATATTTTTGGTTTGTCCTCCGTCCGAAAAAGCTTGTC
CCAAGGTTGTGTCTTGAATGGATGTATCTAGCACCAATTTGATGCTAGATACATCCATTTCAGCAACAAACTTTTCCGGA
CGGATAGAGTATATGCATTGGGAGTCTAGGATGGGATGCTTTGTTATGTCGTTCGGTTATTAGAAATTCTAATAGTGAAA
CCTGGTCCATGTTGGATCGTATGAAAAAGAAAGTTCCTCAATGGGTAAGGACAAAATAGGTGCACCAAGGGCAAGGCGGG
CTCCTTTTTTTTTGAAAAACTCCACACATATATTGATCAAATAACAATAGTCTTACAATCGTTCATTACATAATTAGCCA
CGCAGGGCGGAACAGAATTACACAGTATACCATTGGACATGCTATCAAAACTAAATTTTGCTATCTCATGCACCGCCTTG
TTAGCCTGCCTATCAATCTTAACAATCTTGAGATCAACAATAAAC
>chr3A_1
TCCAATCGCAGTTAGGCGCACTCCTCTCGGGAGCGGTGGAGAGCCATGCGGTTGGCCATCTCCTCCTCTTCCCTGCATGG
GTCGAGGTCCCAGATGGCGGATCAGGAGATCTCTAAGTCGAATCCGCTGTCCGCCATGTCAGAGAATGCCGGATATCGTT
GGAACGGAGCTTAGGGGCGGAGTGGCTAGGGTTTTGTCCGGGATATGAATAGGGACGA---ATATATGTGAGGCTGAAGT
GGCTAGGATTTTGTC-----------------------------------------------------------------
--------------------------------------------------------------CGCGATTTTATGACATGT
CATGGACCGGACCGTCTGCCCAGATAAACAGGGG--ATGTTTGAGTAGTCCGGCTGTAGATACTCGTGGATAAGATCCTG
ATGACACCTCCAACAATGG-----------------------------TGTGTCATAGGAAACATGTCAAAACTGGTTGC
GTTTGGAGAAGGAGAACACAAACCGCACGGGTGCTACAGTGCCACTCATCATCAG-------------------------
----AGTCAGGAACGAATT-----------------------------AATCAGGCGGCGCTTTAAGTGCGCATCAAATT
ATTT-----------------CTCACACGGTACATATGCCCAGCGGATTGGAGTTAGACCCGTATCCGTCCCCAACCGCC
CCCATTGAAACCTCTTCCTCT-------------TAAACGAAAAAGCTCAATCGCAACAGTATTCTACTCCGACTCCGCA
CCTGTCACTCACGCTGCCTCCGTGACCTCCTCGCTCCCTCTGCCCCTATATACTCCCGTCGCCGATTGCTCGACACCATT
GTTGTTTCTTCCTCCTTCCGCCAATCGATCGTCCCTCTATATCATA----TAATCGTCCAAGTCAGGTCTCCGCGCCGCC
GCGCTG------GGTGGGGACGTATCGAAACGATGGAGGACTTCGTGCTGAGCTACGTGGTGACCGGGCTGGCCTTCTGG
TCGACGGCGTTCCTGGTGATGCGGGCGCTGATGCCGAAGCGCTCCTACGAGTTCTGCAACCGCGCCGTCTCCACCATGCA
CGCCGTCGCCGCCGTCTGCATGGCCTGCCTCTCCGTCCAGGAGTGGTCGTGCCCCGTCTGCCCCCTCAACGCCCCCTCCT
CGCCGCGCCAGGTACGCACCGCCACCGCCACCGCCACCGCACACCGCTGCGCTCGCTGATCCGTGATACACGCGCGCGCA
TGCACTGACTCCGTCCTCTTTCCTCGCTGT-------ACGTACGTGTGTCCATCGATAA-ACAGATGAAGTCCCTGGCGG
TGACGCTGTCGTACATGATCTACGACGCGGCGTGCTGCCACCTCAACGGCGACGTGCGGCTCGACAACACCGTGCACCAC
CTGGTGAGCATCGTCGGCATCGGCGCCGGCCTGGCCTACCAGAGGTGCGGCACGGAGATGATGGCCTGCATGTTCATCAC
GGAGATCTCCAGCCCGCTGCTGCACCTCAGGGAGATGCTCAAGGAGCTCGGCGTCAAGGACACGGACCTCAACCTCCTCG
TCGATGTAC------ACAGACAGACCTCAACCTCTTCTTCTCCCTCTCTCTCTCT-------------------------
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---------------------------------------CTCTCTCTCGTCTGCTGTGAACAGTGCTATAATTAACTATA
TGTCTCTCTTCTC-----CCCCGCGTACGTGCAGATTCTGTTTGCGGCGACCTTTTCGGTGGGACGGATGGTTGGTGGAC
CGTACCTCACCTACGTGACCTTGACAACAGACTACCCCATCCTTATCAAGGTAT--TTTGTAACCATATAAGCCCAGAAG
AACCAAACAAATATTCCGCCGTTCCGCTCCTTATCGGTCTCGAACCCAAATCTCAACTTCACCTTTCTCTTTTTTG--CC
AAAA-----------AAAGAAAACCGTACCTATTTCAAACG----------CCAACTTTTTCCGTATGTAGTGCTTACT-
-----------------------------------------------------------------AATTTCCTTTTCTGT
GATGTTATTTTCCGATTCGCCAGGCGATGGCTGCGGGTTTGCAACTGGTGAGCGCCTACTGGTTCTTGAGGATACTCAGG
ATGGTCAGGTACAAGCTCGGGAAGAAGAGGCCGGCGGCGGCGGCGGC---CAAGGTCAATGCCAAGTGATACATCCATGT
ACATACACATCTTGCTTGCAACCTTGAGCAAATTACTTGCTTTCTGGCGGGATGA----GATCCATCGATCGTTTGTATG
TACAAAACCCGCCGTGTTTGCCCGATTCTGGCTAAGAAAAAAGGATTGTTCATGTAGCATATCAATTGTTCCACAGGCAA
GCATCTTCCGAACAAAGGATGCATATATACACACTGTAGCAATTCA---------ACTCTTGTGCAGAAATACTTTCCGA
GCACTACCGCTTGCCTCCTTACTGTTTGTAGTTGTAGAGGATTTTAAGCTTCTCTTCTTGCTGCTTACACAGTTGTTAGA
TTGGATTATTCTTGTTA--ATGCCGTTTTGGTGTATAATTTGAATGTGTAGATTGTACCTGCATTTTTTATACATGCATG
ACGTGCCCTCTGTTGATGCGCGTAGCTCCTGGTGTTTTGCGTTGTCCCATTACAGTCCTTTTGAACTCCTAGTTTTGTTG
TCAGTAATCTGCTAGCAATAGGCGCCAGAACGAACTCCCTTCTATTTTTTGGTTTG------------------------
--------------------------------------------------------------------------------
---------TATATGCACTGGGAGTCTGGGATGGGATGCTTTGTTATGTTGTTCGGTTATTAGAAATTCTGATAGTGAAA
CCTGGTCCATGTTGGATCGTATGATAAAGAAAGTTCCTCAATTGGCAAGGACAAAATAGGTGCACCAAGGGCAAGGCAGG
C-------------------------------------------------------------------------------
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>chr3B_1
TCCGACCGCGGTTAGGCGCACTCCTCCCGGGAGCGGTGGAGAGCCATGCAGACGACCATCTCCTCCTCTTCCATGCATGT
GACGAGGTCCCAGTCGGCAGATCAGGAGATCTCTGAGTCAAATCCGTTACCCGCCATGTCAGAGAAGGCCGGAGATTGCC
GGAACGGAGCTTGGGGGTGGAGTGGCTAGGGTTTCGTCCGGGATGTGAATAGGGATGA---ATATATGTGAGATCGTAAT
GGGCTAGCGTGTGCTAGATCAGACATGGCGGACGCGCCCGGGCTTGTCCGGGACTCCCCATATCCGTCCAAGATATGTGC
TGGATACAAGGGGTGTCGTTTAGTCCGGACGTACAGGGTCGGTATAAGGGGTGCGGCTGGGTCGCGATTTTGTGACATGC
CATGGACCGAACCGTCTGCCCAGACGAACAGGGG--ATGTTTGAGTAGTCCGGCTGTAGACACTCTCGGATAAGATCCCA
ATGATACCTCCAACAATTG-----------------------------TGTGTCCTAGGAAACATGTCAAAACTGGTTGG
GTTTGGAGAAGGAGAACACAAACCGCACGGGTGCTACAGTGCCACTCATCATCAGAGTCAGGAACGAATTCGGCTGAAAA
GAAGAGTCAGGAACGAATT-----------------------------AATTAGGCGGCGCTTTAAGTGCGCATCAAATT
ATTTTTCACAAGGTACATATGC-----------------CCAGCGGATTGGAGTTCGACCCGTATCCGTCCCCAACCTCC
CCCATTGAAACCTCTTCTTCTTCTCTTTCCGTAATAAACGAAAAAGCTCAATCGCAACAGTATTCTACTCCGACTCCGCA
CCTGTCACTCACGCTGCCTCCGTGACCTC---GCTCCCTCTGCCCCTATATACTCCGGTCGCCGATTACTCGACATCATT
GTTGTTTCTTCCTCCTTCCGCCGATCGATCGTCCCTCTATATCATA----T---CGTCCAAGTCAGGTCTCCGCGCCGCC
GCGCTG------GGTGGGGACGTATCGAAACGATGGAGGACTTCGTGCTGAGCTACGTGGTGACCGGGCTGGCCTTCTGG
TCGACGGCGTTCTTGGTGATGCGGGCGCTGATGCCGAAGCGGTCCTACGAGTTCTGCAACCGCGCCGTCTCCACCATGCA
CGCCGTCGCCGCCGTCTGCATGGCCTGCCTCTCCGTCCAGGAGTGGTCCTGCCCCGTCTGCCCCCTCAACGCCCCCTCCT
CGCCGCGCCAGGTACGCACC------------GCCACCGCACACCGCTGCGCTCACTGATCCGTGATACACGCGCGCGCA
TGCACTGACTCCGTCCTCCTTCGTCCTTCCTGTACGCACGTTCGTGTGTCCATCGAATCGACAGATGAAGTCTCTGGCAG
TGACGCTCTCGTACATGATCTACGACGCGGCGTGCTGCCACCTCAACGGCGACGTGCGGCTCGACAACACCGTGCACCAC
CTGGTGAGCATCGTCGGCATCGGCGCCGGCCTCGCCTACCAGAGGTGCGGCACGGAGATGATGGCGTGCATGTTCATCAC
GGAGATCTCCAGCCCGCTGCTGCACCTCAGGGAGATGCTCAAGGAGCTCGGCGTCAAGGACACGGACCTCAACCTCCTCG
TCGATGTAC------ACAGACCTCAACC-------TCTTCTTCCTCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCGTCTGCTGTGAACAGTACTATAATTAACTATA
TGTCTCTCTTCTC-----CCCCGCGTACGTGCAGATTCTGTTTGCGGCGACCTTTTCGGTGGGACGGATGGTTGGTGGAC
CGTACCTCACCTACGTCACCTTGACAACAGACTACCCCATCCTCATCAAGGTATATTTTGTAACCATAC--GCCCA-AAG
AACCAAACAAATCCTCCGCCGCTCCGCTCCCTATCGATCTCCAACCCAAATCTCAACTTAACCTCTTCCTTTTTTCTTCC
AAAA-----------AAGGAAAACAGTACCTATTTCAAACGCCAGCTATTTCCAACTTTTTTTCTGTA------------
--------------------------TGCATATGCGTGC---------------------TTACTAATTTCCTTTTCTGT
GATATTATTTTCCGATTCGCTAGGCGATGGCTGCGGGTTTGCAACTGGTGAGCGCCTACTGGTTCTTGAGGATCCTCAGG
ATGGTCAGGTACAAGCTCGGGAAGAAGAGGCCGGCGGCGGCGGC------CAAGGTCACTGCCAAGTGACCGATCCATGT
ACATACATATCTTGCTTGCAACCTTGAGCAAATTACTTGCTTTCTGGCGGGA-GA----GATCGATCGATCGTCCGTATG
TACAAA-CCCGCCGTGTTTGCGCGATTCTGGCTAAGTAAAAAGGATTATTCATGTAGCATATTAATTGTTCCACAGGCAA
GCATCTTCCCAACAAAGGATGCATATATACATACTGTACGTAGCAATTCAATTTGACTCTTGTGCAGAAACACTTTCCGA
TCACTACCGCTTGTCTCCTGGCT-------GTTGTAGAGGATTTTAAGCTTCTGTTCTTGCTGCTTATACAGTTGTTAGA
TTGGATCATTCCTGTTATAATGCCGTTTTGGTGTATAATTTGAATGTGTAGATTGTACCTGCATTTTTTATACATGCATG
ACGTGCCCTCTGTTGATGCGCGT-GCTACTGGTGTTTTGCGTTGTCCCATTACAGTCCTTTTGAACTCCTAGTTTTGTTG
TCAGTGATCTGCTAGCAATAGGCGCCAGAACGAACTCCCTTCTATATTTTGGTTTG------------------------
--------------------------------------------------------------------------------
-----------TATGCACTGGGAGTCTGGGATGGGATGCTTTGTTATGTCGTTCGGTTATTAGAAATTCCGATAGCGAAA
CCTGGTCCATGTTGGATACTATGAAAAAGAAAGTTCATCGATGGGCAAGGGCAAAATAGGTGCACCAAGGGCCAAGTCAG
GCTC----------------------------------------------------------------------------
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>SNPs
-----------------------------S---S----------------------------------------------
------------S----------------------------------------------------------S--------
----SS-------------------S-------------S------------------SSS---------S-----S---
----S--S----------S-----S--S---------------S----------------------S--S----------
---------------S-SS-S--S-S---S----S---S---S----S--------------------------------
---------------------S------S----SSS---------------SSS-------------------S---S-S
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
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-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S-------
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---------------S-----------SS---------------------------------------------------
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----------------------------------------------SSSS--------S-S-SS---S-S----------
------SSSSSS--------------------------------------------------------------------
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-----------------S--------------------------------------------------------------
---------------------------------------------------S----------------------------
-------------------------------------------------------------S------------------
-----S--------------------------------------------------------------------------
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--------SSSSSSS----------S-----------------S------------------------------------
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----------------------------------------------------S-------------------------S-
-------------SSSSS--------------------------------------------------------------
----------------S-------------------------------------------------S------S------
S-------------S------------------S-----------------------------------------S--SS
S-SSSSSSSSSSSSS---S----SS-------------------------S----------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-SSSSSSSSSSSSSSSSSSSSSS-------S------------
-------------S------------------------------------------------------------------
-----------------------------------------------SSS----S-------------------------
-------------------------------------------------------SSSS------------S--------
----------S-S----S---------S----------------------------------------------------
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-------------------S----------S--S------------S---------------------------------
---------------------S-S----------S-----SS--------------------------------------
--------------------------------------------------------------------------------
-S------------------------S--------S-----SS-------S-S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS--------S---------S------------------------------------------S---------
---------------------------------------------S-------------------------------S--
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_341
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-GGATACAAGGGGTGCCAGTC-----------------------------------------------------------
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>reverse_1692
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-----------ACAGACAGACCTCAGCCTCT-------------------------------------------------
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>forward_816
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----------------------------------------------------------------------------CGCC
CCCATTGAAACCTCTA----------------------------------------------------------------
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>reverse_3177
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--------------------------------------------------------GTCCTCCGTCCGAAAAAGCT----
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