>input_sequence_57292
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------------------------------CTCGGACACCGGTCACTGGACAACACAGCATCTC--CTCTCGCCCCTCAA
AATATCCCAAGCTCCAAAGCCCAAAGCATCGATCAGAGCCGATCAAATATAGTAGTATTTGTTGATCGAGCACTAGCT--
---AGAGAAGTATTCTCGTGTTGCTGTTAGCTTTGATTTGCTGGAAAGATGAGCCCCGAGGAGGGAGAGAGGCTCCTGTT
CCCTTCCTTCGTCTTCCCGGACAGCTTCCCGGCCGACGACGCCACACCAGTCGTCTCCGGTAAGTTCAACTATCCATGTC
GTCGTTGATTTAGCTAGCGC------------------------TAGGTGCTCGAGATCTAAATTGAGTGTTCAACCGCA
ATGTGCTGTTGCTTATTCTCAAGTGCATGTGGGTGCAGGTGGAGAGCAGAAGAAGGCCGGCCGGCAGCGGCGGAGGAGGA
GGGCGAGGCAGGCAGCGGCAGGCGAAGGCGCGGGAGGGGACGATGCGGCGAAGAAACGCCGGCTGAGTGACGAGCAGGCG
CAGTTCCTGGAGATGAGCTTCAGGAAGGAACGTAAACTGGAGACGCCGCGCAAGGTGCAGCTCGCGGCGGAGCTTGGCCT
GGACACCAAGCAGGTCGCGGTGTGGTTCCAGAACCGCCGCGCCCGCTACAAGAGCAAGCTCATCGAGGAGGAGTTCTCCA
AGCTCCGCGCCGCCCACGACGCCGTCGTCGTCCACAACTGCCGCCTCGAGGCCGAGGTACAGTGCAACAGTCCGACTGGC
TAGTGTC--TTGTC--TACTCACGCCATGC-----------AGCTAGCTGCAGTTCACACTTCACAGACATAAATGACAT
AATTCTTGGGTAC------TAG------CTAGCTAGCTGGTTTGTGCTGCACTAACATGTGCATGTATATATCGATGCAG
CTGCTGAGGCTCAAGGAGAGGTTGGCGGAGACGGAGGAGGAGAAGAACAAGGCCATGGCGGCGG---CAGCGGCGACAGC
GGGCGGCGGGGGTGGCAGCAGCCCGAGCTCTTCGTCGTTCTCGACGGTGACGGCAATGGTAGGGGGGCAGCAGTTCGGGA
TGGAGGAGGTGGAGACCGACCTCACCTACATGAGCGAGTACGCCTACACCAACTACATGATGGACTTGGCGGCCGGCGGC
TACCTCGGAGTCGGAGGGGTGTACGATCAGTTCAGCTGATCTGGATAGA-GGGGTGAAAGAACAGTGCTAGTAGTAGTTT
ACTATGATCAATCAATGTTAATTAATTA-T--------------------------------------------------
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------------------------------------------------
>chr4D_1_TraesCS4D01G261600
ACAAGTGCGCAGGAATTTCACAGTTCTCGCCACAAGCATCCATCGATGCCCGTCCGGCGAGTGTAGTGCGTGCGTCCTTG
TCGCCAAAAGACGGGAATGTGCTATTAAATCTGGGGAGATCAGCACCAGTCAGAGACGA---------------------
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--------------------------------------------------------GGATCGCCGCCTCCTCATCACCGA
GGCAAACAAGCACGCCATGGCAGTGTGGCACCAGCGCTTCTCGCATAATGTCGCCACGGAGAACGAGTTCTGGGCGCAGA
GGAGGGCGGAGCGAGCCGTGCGTCGGGCGCCCGACAAGCGTGCGCG--GAAGGAACTAGCGGAAGCCCAGATCGACATGG
GACATGCGTCGACCTGAGACGATGAAGATACTCGGTGGCTCGACGCG--TTTACGTCGTCGGAC--CACCACCGAGGAGG
ACGAGGAGTAGTCTAGTATCGTTTTATCTATTTTTATTTAGCATCATATGAACTTGCTTGCGGTTTGGG------GTTTG
AACTATGCTATGAATTTGAACTATGA----------ATGTTTCCGTATATGTTGTTT-CATTTTTTTT--C-CAAGCACC
GGCTGG--G--CGCGCG--CTGGATTTTACCGCGCCTTGTGAAACGCTACCGCGGCGCGCTAAATTTTGTAGCGTCTGAA
AAATCAACCATCCTCCTGCACGTGCTAAAACGCTATTTCGGCGCTGAAAAAAAATAGC----GCGCCGG--TTGGAGATG
CTTTACAGTGCATAGTAAGCATGTTACTCAAGCTCACTCGCTCGGTCGCTTT---TACGCTGCTCCAGTTTCATTTTCCA
TTATCCAAAACTAGCACACAATT----------------------ACTCTG---ATCGATCACTATTACCGGCGGATGAT
GA-CAATTCACAGCGCGACACACGCAGCATCGCTTTCTCGTGGCTCCCCACACCACGAATTATTAAGCCCCAACTCCTAT
CTACC---ACTCCTAGTGCCAGTAGTAGAGCTGCTACGACACCCCTCTCTCCTCAGCCCTC---GCCTCTCCCTCTATAA
ATTCCCCCGGCCGAGCTCCAGGCTCACAGACTCGGACACCGGTCACTGGACAACACAGCATCTC--CTCTCGCCCCTCAA
AATATCCCAAGCTCCAAAGCCCAAAGCATCGATCAGAGCCGATCAAATATAGTAGTATTTGTTGATCGAGCACTAGCT--
---AGAGAAGTATTCTCGTGTTGCTGTTAGCTTTGATTTGCTGGAAAGATGAGCCCCGAGGAGGGAGAGAGGCTCCTGTT
CCCTTCCTTCGTCTTCCCGGACAGCTTCCCGGCCGACGACGCCACACCAGTCGTCTCCGGTAAGTTCAACTATCCATGTC
GTCGTTGATTTAGCTAGCGC------------------------TAGGTGCTCGAGATCTAAATTGAGTGTTCAACCGCA
ATGTGCTGTTGCTTATTCTCAAGTGCATGTGGGTGCAGGTGGAGAGCAGAAGAAGGCCGGCCGGCAGCGGCGGAGGAGGA
GGGCGAGGCAGGCAGCGGCAGGCGAAGGCGCGGGAGGGGACGATGCGGCGAAGAAACGCCGGCTGAGTGACGAGCAGGCG
CAGTTCCTGGAGATGAGCTTCAGGAAGGAACGTAAACTGGAGACGCCGCGCAAGGTGCAGCTCGCGGCGGAGCTTGGCCT
GGACACCAAGCAGGTCGCGGTGTGGTTCCAGAACCGCCGCGCCCGCTACAAGAGCAAGCTCATCGAGGAGGAGTTCTCCA
AGCTCCGCGCCGCCCACGACGCCGTCGTCGTCCACAACTGCCGCCTCGAGGCCGAGGTACAGTGCAACAGTCCGACTGGC
TAGTGTC--TTGTC--TACTCACGCCATGC-----------AGCTAGCTGCAGTTCACACTTCACAGACATAAATGACAT
AATTCTTGGGTAC------TAG------CTAGCTAGCTGGTTTGTGCTGCACTAACATGTGCATGTATATATCGATGCAG
CTGCTGAGGCTCAAGGAGAGGTTGGCGGAGACGGAGGAGGAGAAGAACAAGGCCATGGCGGCGG---CAGCGGCGACAGC
GGGCGGCGGGGGTGGCAGCAGCCCGAGCTCTTCGTCGTTCTCGACGGTGACGGCAATGGTAGGGGGGCAGCAGTTCGGGA
TGGAGGAGGTGGAGACCGACCTCACCTACATGAGCGAGTACGCCTACACCAACTACATGATGGACTTGGCGGCCGGCGGC
TACCTCGGAGTCGGAGGGGTGTACGATCAGTTCAGCTGATCTGGATAGA-GGGGTGAAAGAACAGTGCTAGTAGTAGTTT
ACTATGATCAATCAATGTTAATTAATTA-TTAATCAACCGGGATTGCGGGGTAATCGTATGCACGTACTAGCAGTA----
-----------------GTA-GTATTGGTGGTAGTTTCAATGGGTCATCAATGGGTGGATGCCCTAACGGAGAATCTCAG
TAGTAGTATTTGCTAAGCT---AGCCATGTACATTATGAATTGGTAATCTTTGTAAGTATATTATGTAT--GGGTTATCA
TCATGCAAGTGGTTTATCGTGAACTGAACTAGTG---ATGTCTAATGGTGTGATCACAGTTCACAAGGCGTATGTGTAGT
-CCCATTTGTAGTCTTTTGCTTTTGCTTTTTGATTTTTATTTTTAAAAAGGAGGAAGACCCTCGGCCTATGCACCTGGGC
GATCCATGCAGCCATTTTATTAATTATTCATAAAAGACTTTACAAAGAAATACAGCGGTAAGTCTGAAATCACCGTCTAG
GCAACATCTGTCGCTACTCCTATCCTGTTGATGAAGGGATGCTGATAGTCTGAGCCTAATACCAAACAGACCTCGCAGCC
AAGTCTAACATTTCAGACCTGAGGCCCCAACTAAGCCACTTACCGAGTATGCGGCACACACCGGTCCAGCGAACACACAA
AGGCCGCACCGCCACCAATCCATCTTCAGAGCTGTACTGACGCATCAACCTTGCCTGGTCTAGCTGCCGTAGACGCCACC
ACGACGCCAGACAACGCCACCATCCTACGCTCGTCCATCAACACACACCCAGCAGCGAAACCCCGCTGCTTCATGCCGCT
GAAACCCGCCGTTCTCTCAACGTGTCTGATCTGGGTTGGCTTCGGCCCAACTGACTGGGCTTCACCTCAGTTGGTTGGCT
TTATCACAGAACAATGTA-TATTATGAAGGGAAAAATGCCACCTGATTATATCCCTTTCGTCTTTCAATCAGCAGGTGTT
CTCTATGTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACTGGCGGCACAGGACAGTGGTAGCACTAGCACGGCACTG------ACGC
TGGGCATCATTCGGAGCATGAGATGGCAGGAACAGAGCAGCAGTTGCT
>chr4A_1
ACAAGTGCGCGGGAATTTCACAGTTCTCGCCACAAGCATCCATCGATGGCCGTCCGGCTAGTGTAGTGCGTGCGTCCTTG
TCGCCAAAAGACGGCACTGTGCTGTT-AATCTGGGGAGATCAGCACCCGCTTAGAGCATCTCCAACTGGCGCGTTGGAAA
AACCGTCCAGCTTCGTGCGCGAGAGGCCGTGCGACACGCACCAGCAGACGCGTGAAAAGTTGGCGCGCGAAATAAATTGA
CCCGGGCGCGGGAAAAAGCGACAGCGCGCGCGCGGTAGTTTTGTCGCGCGACGCCCAGCCCACTGGGTTATAAGCCGCGC
CCCTGCGCCCGCCAACCGTCAGAAACTTCTCTCCCGCCACACCTCTTTCAGCGCCCCGCGCCGCCGCGTCTTCTTCCTCC
ATCGGTTCCAGCGCCTCGCCATGCCACCGTGTCCCCAGAGCAGCTCGGGCTACCGCGGCGTCTGCCTCCGCCCCTCCGCG
TGCATTACGCGGAGATCCGCTCCGGCAATACATGCCTCGGGCTCGGAACATTCGACACCGCCCACGAGGCCGCCGGCGCA
TACGACACGACGGCGTGGCGCCTCGGGCGGCCTCGGCCGCAGATGAATTTCTTCGAGTGCGGACACGCCTGGCGCAGGAT
CTCGCACCTCCCCCGCGACTAATCAGCGACGAGGATCGCCGCCTCCAACATAGGCGGGAGCGCCCCCTCCTCATCGCCGA
GGTGGACGAACACACCATGGCGGTGTTGCGCAAGCGCTTACCGCAGGATGTCACCGTCGAGAATGAGTTCTGGACGCAGA
GGAGGGCGGAGCGAGCCGTGCGTCGGGGG---GACAAGTGTGCGCG--GATGGAACTGGCAGAAGCCCAGATCGACCTAG
GACATGCGTCGACATGGGACGATGAAGATCCTCGGTGACTCGATGCA--TTTACGTTGTCGGACTACACCACCGAGAAAG
ACGGGAAGTAGTCTAGCATCGTTTCATCTAGTTTTATTTAGCATCGTATGAACTTGCTTGT------GGTTTGGGGCTTG
AACTATGCTATAAATTTGAACTGTAA----------ATGTTTCCGTATGTGTCGTTT-CATATTTTTT--C-CAAGCGGC
GGCTGG--G--CGCGCG--CTGAATTTTACTGCATCTGGTGAAGCGCTACAGCGGCACGCTAAATTTTGCAGCGCCTGAA
AAAGCACTCATCCT----CGTGCGTTAAAACCCTATTTCGATGCCGCAAAAAAATTTA----GCGCCTCTATTGGAGATG
ATTTACAGTGCGTAGTAAGCATGTCACTCAAGCTCACTCCCTCGGTCGCTTT---TACCCTGCTCCCGTTTCATTTTCCA
TTATCTAAAACTAGCACACGATT----------------------ACTCTGATTATCGATCACTATTACCGGCAGATGAT
GACCAATCCACAGCGCGACACACGCAGCATCGCTTTCCCGTGGCTCCCCACACGACGAATTATTAAGCCCCAACTCCTAT
CTACC---ACTCCTAGTGCCAGTACTACG------------CCCCTCTCTCCTCAGCCCTC---GCTTCTCCCTCTATAA
ATTCCCCCGGCCGAGCTCCAGGCTCACAGACTCGGACACCGGTCACTGGACAACACAGCATCTG--CTCTCGCCCCTCAA
AATATCCCAACC-CCAAAGCCCAAAGCATCGATCAGAGCCGATCAAATATACTAGTATTTGTTGATCGGGCACTAGCTAG
-AGAGAGAAGTATTCTCGTGTTGCTGTTAGCTTTGATTTGCTGGAAAGATGAGCTCCGAGGAGGGAGAGAGGCTCCTGTT
CCCTTCCTTCGTCTTCCCGGACAGCTTCCCGGCGGACGACGCCACACCGGTCGTCTCCGGTAAGTTTAATCATCCATGTC
GTCGTTGATTTAGCTAGCGCACCATCCATATGC--------ACGTAAGTGCTCGATC--------GAGTGTTCAACCGCA
ATATGCTGTTGCTGATTCTCAAGTGAAT---GGTGCAGGCGGAGAGCAGAAGAAGGCCGGCCGGCAGCGGCGGAGGCGGA
GGGCGAGGCAGGCAGCGAGTGGTGAGGGC---GGAGGGGACGACGCGGCGAAGAAGCGAAGGCTGAGCGACGAGCAGGCG
CAGTTCCTGGAGATGAACTTCAGGAAGGAGCGGAAGCTGGAGACGCCGCGCAAGGTGCAGCTCGCCGCGGAGCTGGGACT
GGACACCAAGCAGGTCGCCGTGTGGTTCCAGAACCGCCGCGCCCGCTACAAGAGCAAACTCATCGAGGAGGAGTTCTCCA
AGCTCCGCGCGGCCCACGACGCCGTCGTCGTCCACAACTGCCGCCTCGAGGCCGAGGTACAGCGCAACAGTCCGACTGGC
TAGTCTC--TTGTCTTTACTCACGCCATGC-----------AGCTAGCTGCAGTTCACACTTCACACACATAAATGACAG
AACTCTTGGGTACTATACGTAG------CTAGCTAGCTGGTTTGTGCTGAACTAACATGTGCATGTATATATGGATGCAG
CTGCTGAGGCTCAAGGAGAGGTTGGCGGAGACGGAGGAGGAGAAAAACAAGGCCATGGCGGCGT---CGGCGGCGGCAAC
GGGCGGCGGGGGTGGCAGCAGCCCGAGCTCTTCGTCGTTCTCGACGGTGACGGCAATGGTAGGGGGGCAGCAGTTCGGGA
TGGAGGAGGTGGAGACCGACCTGACCTACATGAGCGAGTACGCCTACACCAACTACATGATGGACCTGGCGGCCGGCGGC
TACC------TCGGAGGGGTGTACGATCAGTTCAGCTGATCCGGATAGAGGGGGTGAAAGAACAGTGCTAGTGGTAGTTT
ACTATGCTCAATCAATGTTAATTAATTAATTAATCAACCGGGATTGCGGGGCAATCGTATGCACGTACTAGCAGTAGTAG
CAGCAAGTCAGAACTGGGTA-GTATTGGTGGTAGTTT-----------CAATGGGTGGATGCCCTAACGGAGAATCTCAG
TAGTAGTACGTACTATTTGCTAAGCCATGTACATTATGAATTGGTAATCTTTGTAAGTATATATTATGTACGGGTTATCA
TCATGCAAGTGGTTTATCGTGAGCTGAACTAGTAGTAATGTCTAATGGCGTGATCACAGCTCACAAGGCGTATGTGCAGT
CCCCATTTGTATTCTTTTGCTTTTGATGATGATCTG--------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------GGGTCGGCCTCGGCCCAACTGACTGGGCTTCACCTCAGTTGGCGGGCT
TTATCACAGAAGAATATACTATTATGAAGGGGGAAATGCCACCTGATGACATCCCTTCCGTCTTTCAATCAGCAGCTGTT
CTCTGTGTGTGTAGAAGTGCATGCTCTCAGGCCTAAACATGGACCGAAAATAGTTACAGCCAGCTGGGTCTTGAACTTAA
GACCTTTTGACTCTGATACGATGTAGAAGTGCATGCTTTAGTCAATGCAATCAAAGACCGATTTGATATAAAAAAAACTA
TGCAATACATTTATACGTCAACAATGTGTAACTGGCGGCACAGGAGAGTGGCAGCACTAGCAAGGCACTGACGCTTACGC
TGGGCATCATTCGGAGCATGAGATAGCAGGAACAGAGCAGGAGTTG--
>chr3B_126
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--------------------------------------------CCAGCGGAGCCGGGAGCGCCGCCTCCTCATCACCGA
GGTGGATGAGCATGTCGTGGCTGTGTGGCGCGAGTGTTTCCCGCAGGATGTCGCTGCCGGGAACGGGTTCTGGGCACAGA
GGAGGCCTGAGCGAGCCGTGCGTCGAGTG---GACAAGCATGCACG--CAAGGAACTGGCGGAAGCCCGGATCGAGCTGG
GACCTGCGTCGACCAGGGACGATGAACATCCTCGGTGGCTCGACGTA--TTTACATCGTCGGGCTACACCACCGAGGAGG
ACGAGGAGTAGTCTAGCATCACTTTATCTATTTTTATTTAGCGTCGTATGAACTTGCTTGT------GGTTTGGCTCTAG
AACTATACAATGAATTTGAACAATGA----------ATGTTTCCGTCTGTGTTGTTT-CATATTTTTT--C-CAAGCGAT
GGCTGG--T--CGGGCGAGCTGGATTTTATCGTGCCTGGTGAAGCGCTACAGCGGCGCGCTAAATTTTGCAGGGCCTGGA
AAAGCAACCACCCTCCTGCGCGCGGTAAAATGCTATTTC-----------------------------------------
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>chr1A_126
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--------------------------------------------CCAGCAGAGGCGGGAGTGCTGCCTCCTCCTCATCGA
GGTGGACGAGCACGCCATGGCGGTGTGGCGTGAGTGCTTCTTGCAGGATGTTGCCACCAAGACCAAGTTCTGGGCCCAGA
GGAAGGTGGAGCGAGCCGTGCGTCGAGTG---GACAAGCGAGCACG--GAAGGAACTGGCGGAAGCCCAGATCGACCTGG
GACGTGCGTCGACCTGGGAGGATGAAGATCCTCGGTGGCTCGATGTG--TTTAGGTCGTCGGACTACACCACCAAGGAGG
ACGAGGAGTAGTTTAGCATCATTTTATCTATTTTTATTTAGCATCATATGAACTTGCTTGTGGTTTGGG------GCTTG
AACTATGCTATGAATTTGAACTATGA----------ATGTTTTCGTATATGTTGTTT-CATATTTTTT--C-CAAGCGCT
TGCCGG--GG----GTG--CTAGATTTTGCCGCGCTGGGTGAAGCGCTATAGCGGCACGCTAAATTTTGCAGCGCCTAGA
AAAGCAACCATCCTCCTGCGCACGCTAAAATGCTATTTCGGCGCTGTAATTT--TTTA----GCGCGTCTATTGGAGATG
CTCTA---------------------------------------------------------------------------
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>chr2D_126
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--------------------------------------------CCAGCGGAGGCGGGAGCACCGCCTCCTCATCGCCAA
GGCGGACGAGCATGCCATGGTGGTGTGGCGTGAGTGCTTCCCGCAGAATGTCACCGCAGAGAACGAGTTCTGGGCGCAGA
GGAGGGCAGAGCGAGACGTGCGTCGGGCG---GACAAGCGTGCGCG--GAAGGAACTGGCGAAAGCCTAGATCGAGCTGG
GACCTGCGTCGACCTGGGATGATGAAGATCCTCAGTGGCTCGACGCG--TTTACACCGTTGAACTACACCACCGAGGAGG
ACGGGGAGTAGTCTAGCATCATTTTATCTATTTTTATTTAGCATCGTATGAACTTGCTCGTGGTTTGGG------GCTTG
AGCTATGCTATGAATTTGAACTATGA----------ATGTTTTCGTATGTGTTGTTC-CATATTTTTTTTC-CAAATGCC
AGCTGGTCG--CGCGCG--CTGAACTTTACAGCGCCTGGTGAAGCACTACAGCGGCTCACTAAATTTTGTAGCACCTGAA
AAAGTAACCATCCTTCAACGCGCGCTAAAACGCTATTTCGACGCTGCAAA------------------------------
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>chr3D_131
C-------------------------------------------------------------------------------
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-------------------------------------------------AGAGGCGGGAGCGCTGCCTCCTCATCACCGA
GGTGGACGAGCACGCCATGGTTGTGTGGCGCGAGTGCTACCCGCAGGATGTCGCTCCTAGGAACGGGTTCTGGGAGCAGA
GGAGGGCGGAGCGAGCCGTGCGTCGAGTG---GACAAGCGTGCACG--GAAGGAACTGGCGGAAGCCCGGATCGAGCTGG
GGCCTGCGTCGACCTGAGACGATGA-GATCTTCGGTGGCTCGACGCG--TTTACATCGTCGGACTACACCACCAAGGAGG
ATGAGGAGTAGTCTAGCATCGTTTTATCTATTTTTATTTAGCATCGTATGAACTTGCTTGT------GG------GCTTG
GACTATACTATGAATTTGAACTATGA----------ATGTTTCCGTATGTGTTGTTTTATATTTTTTT--C-CAAGCGCC
GGCTGG--T--CGGGCGAGCTGGATTTTACAGTGTCTGGTCAAGCGCTACAGCGACGCGCTAAATATTGCAAGGCCCGGA
AAAGCAACGACGCTCCTGCATGCACTAAAATGCTATTTC-----------------------------------------
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>chr3B_135
--------------------------------------------------------------------------------
------------------------------------------------------GACGA---------------------
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--------------------------------------------------------GGATCGCCGCCTCCTCATCGCCGA
GGCGAACGAGCACGCCATGGCGGTGTGGTGCGAGCGCTTCCCGCAGGGTGTCGCCGCCGAGAACGAGTTCTGGGCGCAGT
GGAGGGCGAAGCGAGTCGTGCGTTGGGCT---GACAAGTTTGCGCG--GAAGGAACTAGCGGAAGGCCAGATCGACATGG
GACGTGCATCGTCCTGGGACGATAAAGATTCTCGGTGGCTCGACGCGCGTTTACGTCGTCGGACTACACCACCGAGGAGC
ACGAGGAGTAGTCTAGCATCGTTTTATCTATTTTGATTTAGCATCGTATGAAGTTGCTTGTGGTTTGGG------GCTTG
AACTATGCTATGAATTTGAACTATGA----------ACGCTTCCGTATGTCTTGTTT-CATATTATTT--C-CAAGCGCC
GGCTGG--G--CGCGTG--CTGAATTTTACCACGCCCGATGAAGCGGTACGACGGCGCGCTAAATTTTGCAGCGTCTGGA
AAAGCAACCACCCTCCCACGTGCGCTAAAACGCTATTTCGGGGCTACAAAATTATTTTAGCGGCGCCTG--TTCGAGATG
CTCTTAC-------------------------------------------------------------------------
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------------------------------------------------
>chr2B_135
--------------------------------------------------------------------------------
------------------------------------------------------GACCA---------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------GCATCGCCGCCTCCTCATCGCCGA
GGC-GACGAGCACGCCATGGCGGTGTGGCGCAAGCGCTTCTTGCGGGATGTCGCAGCCAAGAACGAGTTCTGGGCGCAGA
GGAGGACGGAGCGAGCCGTGCGTCGGGCG---GACAAGCGT--GCG--AAAGGAACTAGCGGAAGCCCAGATCAAGCTGG
GACCTGTGTCGACCTGGGATGATGAAGATCCTCGGTGGCTCGACGCG--TTTACGTCGCCAGACTACACCACCGAGGAGG
ACGAGGAGTAGTCTAGCATCGTTTTATCTATTTTTATTTAGCATGGTATGAACTTGCTTGT------GGTTTGGGACTTG
AACTATGCTATGATTTTGAACTATGTGTTGTTTCATATTTCTTCATATGTGTTGTTT-ATATTTTTTT--C-CAAGCACC
GGCTGG--TCTCGTGCG--TTGGATTTTACCACGCCTGGTGAAGCGCTATAGCGGCGCGTTAAATTTTGCAGCGCCTGGT
-AAGCAACCACCCTCCTACGCGCACTAAAACACTATTTCGGCGCTGCAAAAAATATTA----GCGTGCC-----------
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------------------------------------------------
>chr1D_135
--------------------------------------------------------------------------------
------------------------------------------------------GACGA---------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------GGATCGCCGCCTCCTCATCGCCGA
GGCGGACGAGCACGCCATGACGGTGTGGCGCGAGCGCTTCCCGTAAGATGCCACCGCCGAGAACGAGTTCTGAGCGCA--
--------GAGCGAGCCGTGCGTCGGGCG---GACAGGCGT--GTGCGAAAGAAACCGGCGGAAGCCCAGATCGACTTGG
GACGTGCGTCGACCTGGGACGATGAAGATCCTCGGTGGCTCGACACG--TTTACGTCGTCGGACTACACCATCAAGGAGG
ACGAGAAGTAGTTTAGCATCA-TTTATCTATTTTTATTTAGCATCGTATGAACTTGCTTGT------GGTTTGGGATTTG
AACTATGCTATGAATTTGAACTATGA----------ATGTTTCCGTATGTGTTATTT-TATATATTTTTTTGCATGCGCC
GGCTGT--G--CGCACG--CTGGATTTTTCCGCGCCTGCTGAAACGCTACAGCGACGCGCTAAATTTTGCAGCGACCGAA
AAAGCAACCACCCTTCTGCGCGCGCTAAAACGCTATTTTGACGCTGCAA-------------------------------
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>chr2A_144
--------------------------------------------------------------------------------
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------------------------------------------------------------CGCCGCCTCCTCATCACCGA
GGCGGACGAGCACGCCATAGCGGTGTGGTGCAAGCGCTTCCTGCAGGATATTGCCACCGAGAATGAGTTCTGGGTACAGA
GGAGGGCGGAGCGAGCCTTGCGTCAGGCA---GACAAGCGT--GCGCAGAAGGAACT-GCGGAAGCCCAGATGGACAACC
GAA---CGTCGACCTGGGACGATGATGATCCTCAGTGGCTCGACGCG--TTTACATCGTCGTACTACACTACTGAGGAGG
ACGAGGAGTAGCCTAGCATCGTATTATCTATTTTTATTTAGCATCACATGTAGTTGCCTGT------GGTTTGGGGATTG
AACTATGCTATGAATTTGAACTATGA----------ATGTCTCCGTATGTGTTCTTT-TATATTTTTT--C-CAAGCGCC
GGCTGG--GTGCATGCG--CTGGCTTTTACCGTGCCTGGTGAAGCTCTAAAACGGCGCGCTAAATTTTACAGTGCCTGGA
AAAGCAACCACGCTTCTACACGTGCTAAACT-CTATTTCGGCGCTG----------------------------------
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>chr4B_698
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------------TAGCAAGCATGTCACTCAAGCTCCGTCGCTCGGTCGCTTTAATTACGCTGCTCCCGTTCCATTTTCCG
TTATCCAAAACTAGCACACGATTAGCCGGGGAAAGCTAAGTGGACACACTG---ATCGATCGCGGTACGTAGATGAC---
-A-CAATTCACAGCGCGACACAC---GCATCGCTTTCTCGTGGCTCCCCACACCACGAATTATTAAGCCCCAACTCCTAT
CTACTACTACTCCTAGTGCCAGTAGTAGAGCTGCTACCACACAC--CTCTCCACAGCCCTCGCTGCTTCTCCCTCTATAA
ATTCCCCCGCCCGAGCTCCAGGCTCACAGACTCGGACACCGGTCACTGGACAGCACGGCATCTGCTCTCTCGCCCCTCGA
AATATCCCAAGCTCCAAAGCCCAAAGCATCGATCAGAGCCGATCAAATATAGTATTTCTT-------GAGCACTACTAGC
TAGAGAGAAGTATTCTCGTGTTGCTGTTAGCCTGC-TTTACTGGAAAGATGAGCCCCGAGGAGGGAGAGAGGCTCTTGTT
CCCTTCCTTCGTCTTCCCGGACGGTTTCCCGGCGGACGACGCCACACCAGCCGTCTCCGGTAAGTTCGACTATCCATGTC
GTCGTTGATTTAGCTAGCGCACCATCCATATGTACGTTAGTACGTAGGTGCTCGATC--------GAGTGTTCAACCGCA
ATGCGCTGTTGCTGATTCTCAAGTGCGTGTGGGTGCAGGTGGAGAGCAGAAGAAGGCCGGCCGGCAGCGGCGGCGGAGGA
GGGCGAGGCAGGCAGCGGCAGGCGAAGGCGCGGGAGGGGACGATGCGGCGAAGAAACGCCGGCTGAGTGACGAGCAGGCG
CAGTTCCTGGAGATGAGCTTCAGGAAGGAACGTAAACTGGAAACGCCCCGCAAGGTGCAGCTCGCCGCGGAGCTGGGCCT
GGACACCAAGCAGGTCGCGGTGTGGTTCCAGAACCGCCGCGCCCGCTACAAGAGCAAGCTCATCGAGGAGGAGTTCTCCA
AGCTCCGCGCCGCCCACGACGCCGTCGTCGTCCACAACTGCCACCTCGAGGCCGAGGTACAGTGCAACAGTCCGGCTGCC
TAGTCTTGTTTTTATTCGATCACACCATGCATGCAGCTAGGAGCTAGCTGCAGTTCACACTTCACACACATAAATGACAG
AATTCTTGGGTAC------TGTACTGTACTAGCTAGCTGGTTTGTGCTGCACTAACATGTGCA--TATATATGGATGCAG
CTGCTGAGGCTCAAGGAGAGGTTGGCGGAGACGGAGGAGGAGAAGAACAAGGCCATGGCGGCGGCGGCGGCGGCGACAAC
GGGCGGCGGGGGTGGCAGCAGCCCGAGCTCTTCGTCGTTCTCGACGGTGACGGCAATGGTAGGGGGGCAGCAGTTCGGGA
TGGAGGAGGTGGAGACCGACCTCACCTACATGAGCGAGTACGCCTACACCAACTACATGATGGACTTGGCGGCCGGCGGC
TACC------TCGGAGGGGTGTACGATCAGTTCAGCTGATCTGGATAGA-GGGGTGAAAGAACAGTGC---TAGTAGTTT
ACTATGATCAATCAATGTTAATTAATTAAT----CAACCGGGATTGCCGGGTAATCGTATGCAC------------GTAG
CAGCAAGTCAGAACTCAGTAGGTATTGGTGGTGGTTT-----------CAATGGGTGGATGCCCTAACGGTGAATCTTAG
TAGTACGTA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>SNPs
----------S-------------------------------------S---------S---------------------
--------------S-S------S--S--------------------S-SSSSS--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---S-------------S-------S-S-------------S-----------S----------------------
-----------------------------SSS------------------------------------------------
-----------------------------S--------------------------------------------------
----------------S-------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------------------------S------------S-----------------------------
---S------------------------------------------S--------SSS---------S------------
-----------S------------S-----------------------------------------S-------------
-------------------S-----------------------------------------------------S------
--------------------------------------------------------------------------------
-------------------------------------S----------------------------S-------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------------SSSSSSSSSS---------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------------------------------------------------------------S------------S
------------------------------------------------------------------------S-------
--------------------------------------------------------------------S---------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----SSSSSS----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------SSSSSSSSSSS--------------------------------
--------SS-S---SSSS-------------------------------------------SS-S-S------------
----------------------S----------S--------------S----------S----------------S---
-----------S-------------S-SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S---------------------------------SS----
-----------S---S---------------SS--------------S-S-------S-----------------S----
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-----S----------S-----------------
------------------------S---------------S-----SS
>forward_133
--------------------------------------------------------------------------------
---------------------------------GGGAGATCAGCACCAGTCAG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2808
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GAGTCGGAGGGGTGTACGAT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_728
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCTCATCACCGA
GGCAAACA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2810
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GTCGGAGGGGTGTACGATCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TCTCGCATAATGTCGCCACG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_3003
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GGTCATCAATGGGTGGATGC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
