>input_sequence_57246
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------------------------------------------------------------------------ATGGCCGG
TGTTTTCCACGCCACCACCGCCCGCCCCCGCCTGCCTCTCGTGCTCGCCTGCCTCTCCCCGACCACGCGAAAGCTCCACG
TCACCCGCCCGGCCGCCTTGAGTATGGACGAGGCATCGGCGAGCGCTCCGGGCGCCAAGAAGACGACCACCGTCTTCGTG
GCCGGCTCGACGGGGAAAACCGGCAAGCGCGTCGTGGCGAAGCTGCTGGAGAGGGGCTTCGGCGTCGTCGCCGGCACGAC
GGACGTGGGCAGGGCCCGCGGCAGCCTGCCCCAGGACCCCAACCTCCAGCTCGTTAGTTCATCTCTACTTCAGTACAGTC
GCATTCCTACTCTTCTGCCAGTAGCCA---TGCCGTGAGACGCGTGTCGGCTGAATCCTGAATTGCAGGTGAGGGCCGAC
GTGACGGAGGGCGCCGACAAGCTGGTCGAGGCCGTGCGCGGCGTCGACGCCGTCGTCTGCGCGACGGGCTTCCGGCGGTC
CTTTGACCCCTTTGCTCCCTGGAAGGTTTGTCCGCAACTGCAACCGAAGTAGGAGTTCAGTTTCTTGCCTGAATGGTTCT
GAACTTCTGATTGACACGCTCTTGCCCGTGTAAAAAGAGTTAAGCTTTGCTCC-------TGCAAGTGATAGCTAGCTGA
AAATTATGCCACTGCAGGTGGACAACCTGGGGACGGTGAATCTTGTGGAAGCATGCCGAAAGGCTGGCGTTACAAGATTC
ATACTCGTGAGCTCCATTTTAGTGAATGGGGCCGCGATGGGTCAACTTCTGAATCCAGCCTACATCGTGCTCAATCTGTT
CGGCTTAGTGCTCGTTGCGAAGCTGCAGGCGGAGAAATACATCAGGGGGTCAGGAATAAATTACACGATTGTGAGGCCTG
GAGGGCTCACAGAACAACCGCCAACTGGGAACATTGTCATGGAGCCAGAGGTAAGCAATAGCACGCACACTTCTCCAT--
--GAACCTTGTTA-TTCGAGAGATTTTTTTTTTTTTGAGCGAGAGATTGTTGCTCATACAGCCAAAACATACGATGTTCA
TTTGTGGATTATTTGCAGGACACTCTCTACGAGGGCTCCATATCGAGAGACCAGGTTGCAGAAGTGGCTGTGGAAGCATT
GTTATGCCCGGAGGAGTCTTCCTACAAGGTCGTCGAGATTGTCACCGGAGCTGATGCTCCAAGTCGCCTCCTCAAGGATA
TGTTTGCTTCTGTTAAACAGAAATGA------------------------------------------------------
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>chr7B_1_TraesCS7B01G250100
TGGAGCTGGGTGACGCTTGTGGGTGGTGGGCGACGGCGGTGGTGCGGTCCTATCCTAGCATGGATCTGCGTCCGTTGCTT
GGAGATGGACTAGCGTAGGTGGAGGTCGTCGTTTGGCGTCATCGTGACGTCGATGGCGGAGGCACCTGCCAAGGTTGGCA
CCTCAATCTGCTCTGAAGATGGACCAGTGGAAGATGGCGGCGACGACACATGTGAGTGCGTCGGACCGGTTTGTGCACCG
GACCCGGTATGTGGCTCGGTCGGGGCCTCCGGCTTTACATGTTAGGCTAGGTGAGAGGTCTGGGTATTTGGCCCAGCTTG
CACCCCTTTATCATATGGATTGGAGTAGCGGCAGATGTTGCCAAGATGGTGAATTCAGGCATATTGTTGTACTACTTTAT
AAGATCCTCGAGAATAATCAATAAAATGACCGCATGCATCTTCCAGATGCAGAGGCAGGAGGTCATCCTCCTTTTCTAAA
AAAAAGATATGTGCTTAAATCAAGGACTTAGAAATACAAAATTTCAGTCGATCCAACAAATAGGCGGGTCCTCACACCTT
GATCAATATTTAACTATACTGACAAAACTTTATCGCTTTAAGAGATTATCACTTTGTTATTGGGAATGTTTTTCTCAACC
ACCCAGTTTCACTTCATCCACCCGTATCTCTTATTTTCCAGCTGAATTTCAAACAAGTTTAATTGTTTGGTCAAATTTCA
ACAAAAATATCTATGGATTTGTTTATTTTTGAAATAATTCTGCATTTAAAATTTTAAACATACACTGCATCTACACTTCC
TTTTTTCATATCTTCTTGACTTACAGTTAAAGGGTGCTTTAGTCTAATTTCATCCAAACAAGGTTACGTTGACATGATGA
TAGTCATTACAGAAC-------------------------CCTAGTAAATGTCTCCAACAAAGTGTACTAGTAGTACACA
AACGAACAAGCAAGAGGATAC-------TAGAGACATCTCAAACGAACAGACCCACAGGCCACACATAACCCATGGCCGG
TGTTTTCCACGCCACCACCGCCCGCCCCCGCCTGCCTCTCGTGCTCGCCTGCCTCTCCCCGACCACGCGAAAGCTCCACG
TCACCCGCCCGGCCGCCTTGAGTATGGACGAGGCATCGGCGAGCGCTCCGGGCGCCAAGAAGACGACCACCGTCTTCGTG
GCCGGCTCGACGGGGAAAACCGGCAAGCGCGTCGTGGCGAAGCTGCTGGAGAGGGGCTTCGGCGTCGTCGCCGGCACGAC
GGACGTGGGCAGGGCCCGCGGCAGCCTGCCCCAGGACCCCAACCTCCAGCTCGTTAGTTCATCTCTACTTCAGTACAGTC
GCATTCCTACTCTTCTGCCAGTAGCCA---TGCCGTGAGACGCGTGTCGGCTGAATCCTGAATTGCAGGTGAGGGCCGAC
GTGACGGAGGGCGCCGACAAGCTGGTCGAGGCCGTGCGCGGCGTCGACGCCGTCGTCTGCGCGACGGGCTTCCGGCGGTC
CTTTGACCCCTTTGCTCCCTGGAAGGTTTGTCCGCAACTGCAACCGAAGTAGGAGTTCAGTTTCTTGCCTGAATGGTTCT
GAACTTCTGATTGACACGCTCTTGCCCGTGTAAAAAGAGTTAAGCTTTGCTCC-------TGCAAGTGATAGCTAGCTGA
AAATTATGCCACTGCAGGTGGACAACCTGGGGACGGTGAATCTTGTGGAAGCATGCCGAAAGGCTGGCGTTACAAGATTC
ATACTCGTGAGCTCCATTTTAGTGAATGGGGCCGCGATGGGTCAACTTCTGAATCCAGCCTACATCGTGCTCAATCTGTT
CGGCTTAGTGCTCGTTGCGAAGCTGCAGGCGGAGAAATACATCAGGGGGTCAGGAATAAATTACACGATTGTGAGGCCTG
GAGGGCTCACAGAACAACCGCCAACTGGGAACATTGTCATGGAGCCAGAGGTAAGCAATAGCACGCACACTTCTCCAT--
--GAACCTTGTTA-TTCGAGAGATTTTTTTTTTTTTGAGCGAGAGATTGTTGCTCATACAGCCAAAACATACGATGTTCA
TTTGTGGATTATTTGCAGGACACTCTCTACGAGGGCTCCATATCGAGAGACCAGGTTGCAGAAGTGGCTGTGGAAGCATT
GTTATGCCCGGAGGAGTCTTCCTACAAGGTCGTCGAGATTGTCACCGGAGCTGATGCTCCAAGTCGCCTCCTCAAGGATA
TGTTTGCTTCTGTTAAACAGAAATGAGTTCTTGAGCCTAATTAGATAGGGATTAGTAGCGATGTGCCTAATACGGCGTCA
GTGAAGTGTGTTGTTCT---AACTTGTAAGTCGCGGTTCATCAATGGATATTCAGAAGTATAAAACCTACCATGTTTTAT
CCGTGGAACTTCTTGCCCTATAAAACCTACCGTGTTGGTTTATCCAAAGAGAACCCACGACATCCCATCAGATTCATTCA
AGGGAGTACCTAGAACTGCGAATCAACGTTGAGTTGGTTAGGTGGACAGTGGTTTCCCCAACCCACCAGGGTTCAAATTC
TGTGCTCGCATTATTCCTGGATTTATTTCAGGATTTCCGGCGATGCGCTTTCAGTGGGAGAAGACGTTCCCGTCGACGAT
GAGGCGCCTACGGTGACTTCGTAAATCTCAAGATGATATGCCGGTTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTGT
GCGTGTGTGCGTTCATAGGGATGAGTGTATGCGCGTGTATATGAGCGCTTGTGTCTGTACTGATGCTAAAAAAAAGGGAG
TACCTAGAACTCATCTAGATGAGATATAATTTGGTCTCGTTCATTTTGAAAATAAGAACAGATACAACCCACGTCAGCAC
ACACGCATCTATAGCATCACATCTAATGACTATAAAAGGTGAATGAGACCAAATTACATCTCATCTAGATGAGTTCTAGC
AAAACTGTTCATTCAATGCTCGGCCACATGGTTGGAAATCGGTTGCACGTGCTGGAATTTTGTCTATTTTGGGCCTAGCC
TAATAGTAGTTTCAGAAATTCCTAATAAATCCTAGAGGCCCACGCAGCCCATTCGTGCAAGGCAAGAGGTGGAGCTAAAG
TTTAGTTCCACATTGCTAGTTTAGAGGGAGTTGGACCTCTTTATAAGGGAGGTTTTTTCCCCACATGTATGAGGATGAGA
ACAAGATGGACATCCACGCGCGCTCCTCCTCCGCCGCCCGCCTCGATCTTCCCCATCCCGGCTTACGGC
>chr7D_742
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---------------------TTTATTTTTGAAATACTTCTGTATTCAAAATTTTAACAC-ACATTGCATATACACTTCC
TTTTTTCACATCTTCTTGACTTACAGTTAAAGGGTGATTTAGTCTAATTTCATCCAAACCAGGTTACATTGACATGATGA
TAATCATTACAGAACTTACACGGCAATTTGCTGGTCTAACCCTAGTTAATGTCTGCAACAAAGTGTACTA------CACA
AACGAACAAGCAAGAGGATAC-------TAGAGACATCTCAAACCAACAGACCCACAGGCCACACATAACCAATGGCCGG
TGTTTTCCACGCCCCCACCGCCCGTCCCCGCCTGCCTCTCGTGCTCGCCTGCCTCTCCCCGACCACACGAAAGCTCCACG
TCACCCGCCCGGCCGCCTCCGCGATGGACGAGGCGTCGGCGAGCGCTCCAGGCGCCAAGAAGACGACCACCGTGTTCGTG
GCCGGCTCGACGGGGAAAACCGGCAAGCGCGTCGTGGCGAAGCTGCTGGAGAAGGGCTTCGGCGTCGTCGCCGGCACGAC
GGACGTGGGCAGGGCCCGCGGAAGCCTGCCTCAGGACCCCAACCTCCAGCTCGTTAGTTCATCTCTACTTCAGTACAGTC
GCATTCCTACTCTTCTGCCAGTAGTCA---TGCCGTGAGACGCGTGTCGGCTGAATCCTGAATTGCAGGTCAGGGCCGAC
GTGACGGAGGGCGCCGACAAGCTGGCCGAGGCCGTGCGCGGCGTCGACGCCGTCGTCTGCGCGACGGGCTTCCGGCGGTC
CTTTGATCCCTTTGCTCCCTGGAAGGTTTGTC------CGCAACCGAAGTAGGAGTTCAGTTTCTTGCCTGAATGGTTCT
GAACTTCTGATTGACATGCTCTTGCCCATGTAAAAAGAGTTAAGCTTTGCTCC-------TGCAAGTGATAGCTAGCTGA
AAATTATGCTACTGCAGGTGGACAACTTGGGGACAGTGAACCTTGTGGAAGCATGCCGAAAGGCTGGAGTTACAAGATTC
GTGCTCGTGAGCTCCATTTTAGTGAATGGGGCCGCGATGGGCCAACTTCTGAATCCAGCCTACATCGTGCTCAATCTGTT
CGGCTTGGTGCTCGTTGCGAAGCTGCAGGCGGAGAAATACATCAGGGGATCAGGAATAAATTACACAATTGTGAGGCCTG
GAGGGCTCACAGAACAGCCGCCCACTGGGAACATTGTCATGGAGCCAGAGGTAAGCAATAGCCCGCAGAATTCTTCTCCA
TGGAACCTTGCTC-TT-----------------------CGAGAGATTGTTGCTCATACAACC-AAACATACGATGTTCA
TTTGTGAATTATTTGCAGGACACTCTCTACGAGGGCTCCATATCGAGAGACCAGGTTGCAGAAGTGGCTGTGGAAGCATT
GTTATGCCCGGAGGAGTCTTCCTACAAGGTCGTCGAGATCGTCACCCGAGCTGATGCTCCAAGCCGCCCCCTCAAGGACA
TGTTTGCTTCTATTAAACAGAAATGAGTTCTTGAGCCTAATTAGATAGGGACTAGTAGTAATGTGCCTAATACGGCGTCA
GTCAAGTGTGTTGTTCTTCTAACTTGCAAGTCGTGGTTCATCTATTGA-ATTCAGAAGTATAAAACCTACCGTGTTTCGT
CTGTGGAACTTCTTGCCGTA-AAAACCTACAGTGTTGGTTTAGCCAAAGAGAGCCCACGACATCCCATCATATTCATTCA
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>chr7A_893
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------------AAC-------------------------CCTAGT---TGTCTGCAACAAAGTGTACTA------CACA
AACGAACAAGCAAGACGGTTCTAGAGAGTACAGACATCTCAAACGAACAGACCCACAGGCCACACATAACCAATGGCCGG
TGTTTTCCACGCCACCACCGCCCGCCCCCGCCTGCCTCTCGCGCTCACCCGCCTCTCCCCCACCACCCGAAAGCTCCACG
TCACCCGCCCGGCCGCCTCCACGATGGACCAGGCGTCGGCGAGCGCTCCGGACGCCAAGAAGACGACCACCGTGTTCGTG
GCCGGATCGACGGGGAAAACCGGCAAGCGCGTCGTGGCGAAGCTGCTGGAGAGGGGCTTCGGCGTCGTCGCCGGCACGAC
GAACGTGGGCAGGGCCCGCGGCAGCCTGCCCCAGGACCCCAACCTCCAGCTCGTTAGTTCATCTTTACTTGAGTACAGTC
GCATTCCTACTCCTCTGCTGCCGATTGTTGTGCCGTGAGACGCGTGTCGGCTGGTC---GAATTGCAGGTGAGGGCCGAC
GTGACGGAGGGCGCCGACAAGCTGGTCGAGGCCGTGCGCGGCGTCGACGCCGTCGTCTGCGCGACGGGCTTCCGGCGGTC
GTTTGACCCCTTCGCTCCCTGGAAGGTTTGTC------TGCAACCGAAGCAGGAGCTCACTTTCTTGCCTGGATGGTTCT
GAACTTCTGACCGGCATGCTCGTGCCCATGTAAAGAG--TTCAGTTTTGCTATTGCAATTTGCAAGTGATAGCTAGCTGA
AAATCATGCTACTGCAGGTGGACAACTTGGGGACGGTGAATCTCGTGGAAGCGTGCCGAAAGGCTGGAGTTACAAGATTC
GTGCTCGTGAGCTCCATTTTAGTGAACGGGGCCGCGATGGGCCAGCTTCTGAATCCAGCCTACATCGTGCTCAACCTGTT
CGGCTTGGTGCTCGTTGCGAAGCTGCAGGCGGAGAAATACATCAGGGGATCAGGGATAAATTACACCATTGTGAGGCCTG
GAGGGCTCACAGAACAGCCGCCCACCGGGAACATTGTCATGGAGCCAGAGGTAAGCAATAGCACGCACACTTCTTCACCA
TGGAACCTTGTTTATT-----------------------CGAGAGATTGTTGCTCATACAGCC-AA-CATAAGATGTTCA
TCTGTGAACTATTTGCAGGACACTCTCTACGAGGGCTCCATATCGAGAGACCAGGTTGCAGAAGTGGCTGTGGAAGCGTT
GTTATGCCCGGAGGAGTCTTCCTACAAGGTCGTCGAGATTGTCACCCGAGCTGATGCTCCAAGCCGCCCCCTCAAGGACA
TGTTTGCTTCTATTAAACAGAAATGAGTTCTTGAGCCTGATTAGATAGGGACTAGTAGTAATGTGCCTAATACGGCGTCA
GTGAACTGTTGTTG--TTCTAACTTGTAAGTCGTGGTTCATCTATGGA-ATTCAGAAGCATAAAACCTACCATGTTTCAT
CTGTGGAACTTCTTGCCGTATAAAACCTACCGTGTTGGTTTAGCCAAAGAGAACCCAC----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------S-----S---S----------SSSS---S-----S---------
--------S---------------------------S----------------------S-------S------------
--S-------------------------------------------S-------S---------------SSSSSS----
-----------------------------------------------------------------------S--------
------------------------------------------------------------------S-------------
------------------SS-SS-----------S--------------------------------------S------
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------------------------S-------------------------------------------------------
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--------------------------------SSSSSS------------------------------------------
----------------S----------S----------------------------------------------------
---------S----------------S----------------------------------------S------------
S-S--------------------------------------S--------------------------------------
------S-----------------------------------------S-----------------S-------------
----------------S-----S---------------------------------------------------S--S--
------------S---SSSSSSSSSSSSSSSSSSSSSSS------------------------S----------------
------S-------------------------------------------------------------------------
----------------------------------------------S----------------S----S---------S-
-----------S---------------------------------------S------SS--------------------
---------------------------------S--------S-----S----------------------------S--
-S---------------S------------------------S---------------------------S---------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_303
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-------------------------------------------AGGCTAGGTGAGAGGTCTGG-----------------
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>reverse_1140
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-------------------GAGTATGGACGAGGCATCGG-----------------------------------------
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>forward_551
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---------------------------------------------------TCCAACAAATAGGCGGGTCC---------
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>reverse_1553
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--------------------------------CGCAACTGCAACCGAAGTAG----------------------------
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>forward_564
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----------------------------------------------------------------CGGGTCCTCACACCTT
GATC----------------------------------------------------------------------------
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>reverse_2603
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------------------------------------------ATGCGCTTTCAGTGGGAGAA------------------
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