>input_sequence_57216
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------ATGGCAGCAACACCATCATATGCCCGCATTCCCATCATCGTCATCGTCCTACTTCTAGCACTCTCGGCCATCTC
TGCTTCTTCATTCTCTCCGAG---TCCAGCCAACGGCAGCGACACAGACCTTGGGGCGTTGCTGGCTTTCAAAGCCCTGC
TCGCCGACCCTCATGGTGTCCTTGCCCGCAACTGGACCGGCACGTCTTTCTGCCACTGGATCGGCGTCTTGTGCAGCCGC
CGCAGGCAGCGCGTCGCTGCTCTATCGTTGTCGGACACACCTCTTGCTGGACCTCTGGCACCTCACCTTGGTAATCTCTC
TTTCCTTTCCATCCTTAATCTCACCGGCACCAGCCTTACGGGTTCCATCCCTCCCGAGCTTGGCAGGCTACGCCGTCTTA
GATATCTTTCTCTTCACGAAAATAGCCTATCAGATGCCATTCCTATTGCCCTAGGGAACCTCACAAGGCTCGAGGCCCTT
AGTCTGAGTTTTAACAAACTATCGGGTCAGATCCCCCCTAAGGTGTTTGTTCGTTTGCCGAAACTTGAGGGGATTTCTTT
GACTCAAAATGACTTGAACGGCCAAATACCACCGGATTTATTCAATAGCACGTCTTTCTTAAAGTACATAAACTTCGGTA
ACAACAGACTCTCGGGCCAGATCCCTCCTGAGATGCTACTACGCGTCCACAACCTTAGAGAATTTTGGCTCAACGAAAAT
GGTTTGAGTGGCCAAATACCACCACATCTATTCAATAGCACTCCTTCGTTGAGGATAATCTACTTGTACAACAACAGTCT
CTCGGGCAAGATTCCTGCTGAGATGTTGTTGCATGTGCACAACCTGGAGGAGTTTGGTCTGGGTAATAATTACTTGAGCG
GCCATATACCACCCTATTTGTTCAATAGCACTCCCTCCTTGACGTTCATCAACTCAGCAACCAATAACCTATCAGGTCCC
ATACCACACGGCATTGCCTCCCTATCCAAACTTGAATACTTGCAATTGAACGACAACCAGTTCTCCAGCCTAGTGCCACA
AGCCATATACAACATGTCCATGCTAGGGTTGATGCTATTATACAACAACAACCTTACTGGTACGATTCCAGACAACAGTA
GTTTTAGCCTCCCCTTGTTGTACTCTCTTGGACTATGGCAACATGTTCAGTGGCAGG--ATTCCATCCGGGCTTGTATCA
TGTCAGTACCTAGAAGATCTGATTTTGCGTAG------------------------------------------------
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------------------------------------------------------------------------
>chr7A_1_TraesCS7A01G042100
ATCTAACAGAACAA-CACTTGGTTCGATGTGCCTAACAAATAGATAACTGGGTTCAATATAAAAAGA----ACAATACTT
AGATTGATATGCCTTAGAAATAGATAACATGGTTA---------GTGTTTGGTTTATCTG------GGAGACAAACCAGT
TCAAAGGAACCTAACTCATGTTTGTGATAGCTTCAACTAGTACTAGTACCGGCTTCTCACCAAACGTG------------
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----------TTCTTTGGAAAGAAAATTAAAATGAGTCATCTCCATTCAACACTGGTGTGATATTAATTGCAACATTTAT
AACTGACACATGCACCTTTCGGCATGCAAAGGCAGATGACATTAATTGAGAATGTTGACTCTGTGTGCCCAGACCAGTAG
ACCACTGTGTATCATCGTGTATTGAATATGTATCTGTAAACGGCAAATTCATTAAGCTTTTAATGCAGC----CATCTTG
ATGCAGGAACTCACTGACGCAGATATCAGGGTGCTGCGCCTCCGGGAGCCATTCGTCCGCCTCCTTGTAGTATGTACCTA
TCATAATTTTGCCAATCTCTGCAAATATTTTACATTAGAGAATTTGCATTTCGCAGGTTCACGTGTGCACTGGAGAGGGC
AGTACATATGTGGCTGTGGCATTCCATCGAAGAAACACTCTTATCACCACTGGTTGGGCAACGTATTTCCTGGATTAATT
CCTGACCATATTTTGATGTTTGATTAGTCAAGTCTTTCCTGGCGTGGAGATGTTTGTCTCCTTTCATCCACGTCCACTGG
TGCATGTCCGAGCTCCTGTCGGAGTCACCACTCCCAGTCAGGCCGGACGTGTATGTATATGGCCATATGGGCTGGGGTGC
GTCGCAGTGCCGTCCCGTAAGGTGAGTCAGGCGACTATGATCAGATGATCGCTACACCTGTGGCGCAAAACAGGATGAGA
TTCTGGAGAAAACCCATATAAATTCCCAAGGGCTCTCGTTCCTTATCGCAAGAGAAGAGATCTACCTCCAACTCAAGTAC
TCAAAAATGGCAGCAACACCATCATATGCCCGCATTCCCATCATCGTCATCGTCCTACTTCTAGCACTCTCGGCCATCTC
TGCTTCTTCATTCTCTCCGAG---TCCAGCCAACGGCAGCGACACAGACCTTGGGGCGTTGCTGGCTTTCAAAGCCCTGC
TCGCCGACCCTCATGGTGTCCTTGCCCGCAACTGGACCGGCACGTCTTTCTGCCACTGGATCGGCGTCTTGTGCAGCCGC
CGCAGGCAGCGCGTCGCTGCTCTATCGTTGTCGGACACACCTCTTGCTGGACCTCTGGCACCTCACCTTGGTAATCTCTC
TTTCCTTTCCATCCTTAATCTCACCGGCACCAGCCTTACGGGTTCCATCCCTCCCGAGCTTGGCAGGCTACGCCGTCTTA
GATATCTTTCTCTTCACGAAAATAGCCTATCAGATGCCATTCCTATTGCCCTAGGGAACCTCACAAGGCTCGAGGCCCTT
AGTCTGAGTTTTAACAAACTATCGGGTCAGATCCCCCCTAAGGTGTTTGTTCGTTTGCCGAAACTTGAGGGGATTTCTTT
GACTCAAAATGACTTGAACGGCCAAATACCACCGGATTTATTCAATAGCACGTCTTTCTTAAAGTACATAAACTTCGGTA
ACAACAGACTCTCGGGCCAGATCCCTCCTGAGATGCTACTACGCGTCCACAACCTTAGAGAATTTTGGCTCAACGAAAAT
GGTTTGAGTGGCCAAATACCACCACATCTATTCAATAGCACTCCTTCGTTGAGGATAATCTACTTGTACAACAACAGTCT
CTCGGGCAAGATTCCTGCTGAGATGTTGTTGCATGTGCACAACCTGGAGGAGTTTGGTCTGGGTAATAATTACTTGAGCG
GCCATATACCACCCTATTTGTTCAATAGCACTCCCTCCTTGACGTTCATCAACTCAGCAACCAATAACCTATCAGGTCCC
ATACCACACGGCATTGCCTCCCTATCCAAACTTGAATACTTGCAATTGAACGACAACCAGTTCTCCAGCCTAGTGCCACA
AGCCATATACAACATGTCCATGCTAGGGTTGATGCTATTATACAACAACAACCTTACTGGTACGATTCCAGACAACAGTA
GTTTTAGCCTCCCCTTGTTGTACTCTCTTGGACTATGGCAACATGTTCAGTGGCAGG--ATTCCATCCGGGCTTGTATCA
TGTCAGTACCTAGAAGATCTGATTTTGCGTAGCAATTATTTTGTGGATGTTGTGCCATCGTGGTTAGGTGAACTTCAATA
CCTCGAAGTGCTTAACTTGGGTGACAACAATCTTGCTGGTTCGATCCCAGCCACACTTGGCAATCTCACTGTTCTCACTA
CGCTAGTCCTCTATAACTGCTACTTTGACGGACAAATTCCATCGGAATTAGGACTACTGCAGAAACTCTCCTACCTAGAT
CTTGGATTTAATCAACTTACTGGTGAAATTCCAGCCTCCCTCGGGAATTTATCCAAGTTGACTCACCTATATTTGCAGGA
AAATAATTTATCAGGCTCAGTACCATGTTAAACAATGTGTATATACGGTGTTTGTATAAACCGTATTAGTGTGTAGGTGT
GTGGGTGTTGTGTTTATCTTCTATTGTAATCTAGCTAGTCTGTTGTGGTATGATCCCATCTGTTAGCTAACTTGAGGATC
AATCCAAAGTCTAACCTTCATGTAAATCTCTTGCCTATATCAACAGGCACGCGTCCCTGCTAATTAGTTGCACATGCTTC
CTGCCTCAATTTAGATGGTATACAAAGCCAAACTCTTCCAGCACATCTATGTCATCTTCATCATGTCGCATGGCTGCCCC
ATCTCTCCCTTCCCTCGACCCTCGGCCACACCATCTTGTGTTCGGCTCATCCTCCCGCCGCACGCTCGCCGAGGAGTGAT
TCATGCTGGCTCCGTTTCAGAGACACACGAGGATGCCGTCCTGAATTACTAATAGTGGCAGTCCCAGCTAAGCTAGGCAA
CAGACAGCAAGCGCTGCCTAATTACCTGCACGAGGCAAGCAGATTCGGCCCAGCCCATCTGGCCACCCGGCGGCCGGCAT
TAGTCAGTGCTCGCACAACCATGGTCGACATGGATGCGGCAGCGGGGCTCCTTTCCTCCTCATGAGCTCAGTACAGAAGA
TCGCAAGGCAAACAGAGAGAGCAGAGCACGAGCAGTGCAAACTTATCCACTCTGAGCTGAGGCTGAGATCGA
>chr1D_1
ATCTAACAGAACAA-TACTTGGTTTGATGTGCCTTAGAAATAGATAACTGGGTTTAATATAAGAAGA----ACAATACTT
AGATCGATATGCCTTAGAAATACATAACATGGTTA---------GTGTTTGGTTTATCTCTGTCTCGGAGATAAACCAGC
TCAAAGGAACCTAACTCATGTTTGCGATAGCATCAATTAGTACTAGTAGTGGCTTCTCACATAACA--------------
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-----TGTTCTTCTTTGGAAAGAAAATTAAAATGAGTCATCTCCATTCAACACTGGTATGATATTAATTACAACATTTAT
AGCTGACACATGCACCTTTCGGCATGCAAAAACAGATGACATTAATA-AGAATGTTGACTCTGTGTGCACAGACTAGTAG
ACCACTATGTATCATCGTGTATTGGATATGTATCTGTAATTGGCAAATTCATTAAGCTTTTAATGCAGC----CATCTTG
ATGTAGGAACTCACTGACTCAGATATCAGGGTGATGCGCCTCCGAGAGCCATTCATCCGCCTCCT---------------
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------------------------------------------------------------------------
>chr5A_1
ATCTAACAGAACAAATACTTGGTTCAACGTGCCTTAGAAATAGATAACTGGGTTTAATATAATAAGA----GCAATACTT
AGATCGATATGCCTTAGAAATAGATAGCATGATTA---------GTGTTTGGTTTAATTG------GGAGACAAACCAGC
TCAAAGGAACCTAACTCATGTTTGTGATAGCATCAACTAGTACTAGTACCGGCTTCTCACCTAACGG-------------
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------GTTCTTCTTTGGAAAGAAAATTGAAATGAGTCATCTCCATTCAACACTGGTGTGATATTAATTGCAATATTTAT
AACTGACACATGTACCTTTTGACATGCAAACGCAGATGACATTAATTGGGAATGTTGATTCTGTGTGCACAGACCAGTAG
ATTAATGTGTATCATTGTGTATTGAATATGTATCTGTAACCTGCAAATTCATTAAGCTTTTAATGCAGC----CATCTTT
ATGCAGGAACTCACTGACGCAGATATCAGGGTGCCGCTCCTCCGGGAG-CATTCATCCGCCTCC----------------
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------------------------------------------------------------------------
>chr2A_1
ATCTAAAAGAATAG-TACTTGAAACGATATGCCTTAGAAAGAGATAACAGGGTTTAACCTAAAAGAATAATACAATACTT
GGGTGGATATGCATTAGAAATAGATAACATGGTTTAGAACTTATGTATTTGGTTTATCTG------GGACAAAACCCCGC
TCGAAGGAGTCTAACTCGTGTTTGTGATACCATCAACTAGTACTAGTACCGGCTTCTCACCTACTCCCTCCATCCATGAA
TAAGTGTACATCTAGTTTTGTTCTAAGTCAAAGTTTTAGAATTTTGACTAACTTTATAGAATATAGTAGTAACATATATG
ACATCAAATTGGTATATTGTCAAAGTACATTTCAAAGCGGATCTAGTGATACTAATTTAGTGTCATAAATGCTTTTACTT
TTTTTAGAAAATTGGTCAAAGTTTTAAAACTTTGACTTAAGACAAAAACTAGATGTACACTTATTCGTGGACGGAGGGAG
TAATGTGTTCTTCTTTGGAATGAAAATTGAAATGCGTCATCTCCATCCAACACTAATGTCATATTAATTGCAACATTTAT
AACTGACAAATGCACCTTTTTGCATGCAAATGCAGATGACATTAATTGAGAATATTGACTCTGTGTGCACAGAAGAGTAG
ACCACCGTGTATCATTGTGTATTGGATATGTACCCGTAACCGACAAATTCATTAAGCTTTAAATGCAGGCATGCATCTTA
ATGCAGGAACTCACTAACGCAG----------------------------------------------------------
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>chrUn_1000
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-----AATGGCAGTCACATCCCCATCTGCCCGCATTCCCATCCTCC------TCCTAGTGCTAGCACTCTCAACCATGCC
TGCTTCTTCTTTTTCGAGACCGGCTCCAGCCAATGGCAGCGACACAGACATCGCCGCGCTGCTGGCTTTCAAAGCCCGGC
TCACCGACCCTGCCGGTGTCCTCGCCAACAACTGGACCGGCACGTCTTTCTGCCACTGGGTCGGCGTCTCGTGCAGCCAC
CGCCGGCAGCGCGTCACCGCTCTCTCCTTCTCTGAAACGCCGCTTTTTGGATCGTTGGTGCCTCACCTTGGTAACCTCTC
TTTCCTCTCCTTCCTTCAAATTATCCATGCTAACCTCACGGGCTCCATCCCACCCCAACTTGGCAGGCTACACCGGCTTA
GATACCTTCGCCTTAAAGGAAATGGACTTTCAGATGACATTCCTACTACCCTAGGTAACCTCACAAGGCTTGACTTCCTT
AGTCTAAGTTATAACCAACTCACG--------------------------------------------------------
-------------------GGCCAAATACCTCCCAATTTATTTATCCATATGCGGGCACTTGACATACTTTCGCTGGCTG
G---------------------------------------------------------------------------AAAT
GAATTGCGTGGCCAAATACCACCCTATCTATTCAAC--------------------------------------------
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--------------------------AACACGCATTCCTTGACAGCCATCG-----------------------------
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--------------ACTTTGGTGACAATTATCTCTCGGGTCAGATACCATCCT---------------------------
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>chrUn_1000
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-----AATGGCAGTCACATCCCCATCTGCCCGCATTCCCATCCTCC------TCCTAGTGCTAGCACTCTCAACCATGCC
TGCTTCTTCTTTTTCGAGACCGGCTCCAGCCAATGGCAGCGACACAGACATCGCCGCGCTGCTGGCTTTCAAAGCCCGGC
TCACCGACCCTGCCGGTGTCCTCGCCAACAACTGGACCGGCACGTCTTTCTGCCACTGGGTCGGCGTCTCGTGCAGCCAC
CGCCGGCAGCGCGTCACCGCTCTCTCCTTCTCTGAAACGCCGCTTTTTGGATCGTTGGTGCCTCACCTTGGTAACCTCTC
TTTCCTCTCCTTCCTTCAAATTATCCATGCTAACCTCACGGGCTCCATCCCACCCCAACTTGGCAGGCTACACCGGCTTA
GATACCTTCGCCTTAAAGGAAATGGACTTTCAGATGACATTCCTACTACCCTAGGTAACCTCACAAGGCTTGACTTCCTT
AGTCTAAGTTATAACCAACTCACG--------------------------------------------------------
-------------------GGCCAAATACCTCCCAATTTATTTATCCATATGCGGGCACTTGACATACTTTCGCTGGCTG
G---------------------------------------------------------------------------AAAT
GAATTGCGTGGCCAAATACCACCCTATCTATTCAAC--------------------------------------------
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--------------------------AACACGCATTCCTTGACAGCCATCG-----------------------------
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--------------ACTTTGGTGACAATTATCTCTCGGGTCAGATACCATCCT---------------------------
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>chr7D_1858
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------------------------------------------------------------------TAATAAGTTGAGTG
GGCAGATACCACCTTATTTATTCAATAACACGCCTTCCCTGAGCTTCATATACTTTGGAAAAAACAGCATGTCAGGTCCG
ATACCACATGGCATAGCCTCCCTATCCAAACTTACATACTTGCAGCTGCAGCACAACCAGTTCTCCGGCCTAGTGCCACA
AGCCATATATAACATGTCCATGCTAGACCTCATGATATTATCGAACAACAACCTTACTGGTACGATTCCAGACAACCAAA
GTTTTATCCTCCCAATGTTGCAAGTGCTTGACCTCTCCGAAAATAAATTTCAGGGACGAATTTCATCAGGGCTTGCATCG
TCTCATTACTTAGTAGGATTGTCTTTGGCAGACAATTCTTTTGTGGATGTTGTGCCATTGTGGTTAGTTGAACTACATCA
CCTAGAAAGTATTTCACTGGGTGGAAATAACCTTGTTGGCTTGATCCCAGCCGCTCTTAGCAATCTCACTAGCCTTACTA
TGCTAGACCTCTCTGGCTGCAACCTTACAGGACACATCCCACCAGAGTTGGGATTAATGCAAAAACTCTCCTTTCTGCAT
CTTGGAACAAATCAACTTACCGGAACAATTCAATCTTCTCTTGGGAATTTGTCCATGTTGTCTCTCCTAGCTTTTGAAGA
AAATAAATTATCAGGCTCAGTACC--------------------------------------------------------
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>SNPs
---------------S------------------S-S-----------------S-------------------------
----S--------------------------------------------------------------------------S
-------------------------------S-----------------------------S----SS------------
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------------------------------S-------------------------------------S-----------
---------------------------------------S----------------------------------------
------------------------------------------------------S----------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------SS---S-SS---S----------------S--SSSSSSS-----S-S-----------SS----SS-
---------S--S--SSSSSS------------S---------------S-S-SS---S------------------S--
--S--------SSS--------S---SS-------------------------------S---------S--------S-
---S-----------S-S-----S--S--S--S--S--S--S---SS----S-SS---SS--------------S-----
------S---S-----S-SS-S-S-SSSS-S-S---S-----S--------S---S-S-------------S---S----
----S---SSS---S-S-S----S-S--S-------S--------S-S-------S--------------S--SSS----
-----S----S----S----SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-----------S--SS-------S-SSSSS-S-SSSSSSS-SS-SSSSS-SSSSS-S-S-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-SS---S----------------SS----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S-----S-
-S--S--------S-----S-------S---S--S--------S------S---SS-S--SS--S-S-S-S--------S
--------S-----S------------------SS---------SS--S-SS--------------S-------------
---------S----------------SSS-S---S------SS---------------------------------SSS-
------S------SS-----S-SSSS----SS--S-SSS--S--SSSSSSSS-SSSS-----S----S-------S---S
-S---S---S---S--SSS--SS----SSSSS-----S--------------------S--------S------S--SS-
---S---SSSS--S-------------S-------------S----------S-S---S-----------SSS--S----
S-----S-----S-SS----S--S--SSS-----S--S---S-S--S--S---S--S----S----------SS--SS--
------SSS-----------S--SSS-----S-S-S--S--S--------S----S----S---S----SS---SS-S--
------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1042
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--------------------------------------------------------------TTCATCCACGTCCACTGG
TG------------------------------------------------------------------------------
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>reverse_2071
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----------------------------------------------------------------------ACAACAGTCT
CTCGGGCAAG----------------------------------------------------------------------
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>forward_1980
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----------------------------------------ACGCGTCCACAACCTTAGAG--------------------
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>reverse_3207
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------TGGCTCCGTTTCAGAGACAC------------------------------------------------------
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------------------------------------------------------------------------
