>input_sequence_57199
--------------------------------------------------------------------------------
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--------ATGTCTGATCTCGACGTCCAGGTTCCAACTGCTTTTGGTATGCACTCATTTCATTATCTCTTCATTAGGGAA
TCACA-------CCTGCCAATCTAGATCAATTT--GAGTCCTTAACCTGTAGATTTTGTTTATTTACGTTCTCTCTCCCG
CTGAATTAACCTAATAGACTGCTCTCAATATCTAATCTCATTAACCAACAGCATGCCATTATCTAGTTGATTATAAGTTG
TTGTATACCAACATATATGTATCATGCTGGACAAGAGCTTTTGCTAACCTTCCCTAGAGGTGGCACAGGTACATAGCTTA
GCTGCATTAATGAAGATGCACAGTCACAGATCACTGTATTAC--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAACATGGATCATTTGTTTTGCCTATAAATAACCTA
TATAGATTGTCTTTTCTTACGTTCTCTCTTACCCTAAATTACCTAATAGACTGTTCTCAATATCTAATTCTATTAACTAA
CAGAATACCACATCTAGTTGATCATGAGTTAGTAGTAGTTGTTGTATACCAACATACATTTATCATGCTGGACAAGAGCT
TTTCCTAACCTTCTCTAGAGGTGGCGCTGA---------TGCATATCTTATCTGTATTAATGAAGATGTGTGTCCACAGA
TGACTATGCCACAGAAA--CATGCATCTTTTTGGTTTG-CGTACAGT---ACACTGATTTGTGTATCCTCTGGTTGCCTT
GCCTAAGTATATCCTCTACCCAGAAGTTGACTTGGCATCTTCTTTGTAGATCCGTTTGCTGAGGCAAATGCTGAGGACTC
CGGCGCTGGTGCTGGATCAAAGAACTATGTGCATGTGCGTGTCCAGCAGCGCAACGGAAGAAAGAGTCTGACAACTGTTC
AGGGTCTGAAGAAAGACTACAGCTACAACAAGATTCTCAAGGATCTCAAAAAGGAATTCTGCTGTAATGGTACTGTAGTC
CAGGATCCAGAACTAGGCCAGGTACAGCGAGGTTCTCTTTTTTTGTTGGTAGCAAAATTCTCTCATCTAAGTGTGTATAT
GCTGATGAGTTATCTTCTATATTTTCAGGTCATCCAACTCCAAGGTGATCAGCGTAAAAATGTTGCTACTTTTCTAGTTC
AGGTAATTTACAATGCCATTTTATATTGTCATGCATATTGACTGTTGCGTCGTTCATCTTCTTAATTTGA----CAATTC
CTGTTTGGTTAGGCTGGACTTGCAAAGAAAGAGAGCATCAAGATTCACGGATTTTAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3D_1_TraesCS3D01G320600
CGCCGTCTGCGGTTCGCACCACCGGACAAGGTGATTTTCCC--CTCCTCGCCCTCCCCCCCATCGGCCGATTCTACGTTT
CCCTGCTCCCCCGCGGCTCGATTTCTAGCGGTGGACTCCGTCTCGCGATCGGTTGT---GGTTGCGCCGTCCAATCGATC
GCCCGCTCCTA--------------------GATCTCGATAGGGCTGTTGGGTTGGTTTTTCGGTGTGCCGATTTTTGGC
CCCAATCGGTTTGTTTTGTGCGGTGGATGATGAGTTTAGGTGGTTTCCGTACCTGATTGGCTGATTTTCTGCTAATTCGG
GTGTCTGATATTGGGGATTCGCTTAGGCGTGCGGCCGCGATTTGAACCGATCTGTCCGCGCGAACAGTTTAGATGAGTAC
CTTGTTCTTT-TGTTGTCGATCTATGCGATTGTGGCTTGGTTCATCTATTTCCTGATGAA--TAGAACGAGAAATATTAG
GACATGCTGTTTGTGATTTAGCAAATTTGTGGGCTGATTTTAGGTTCTCCCTTG-TAGTTAATAAGGAGGT---------
--------CTTCTACTTTCTATGTGGATTTTGGAAGTGACCAAGGATGGGGC-TTATGCTTGCGTTTTGCACACCGTCCC
TCGTTTTTTATGCTGAATGTCCTGTGCACTTAATTCGATGTTGTACTGCTGAGTACCCTCTGTATTGCGTGACTATATCT
GCCTTATATTCCATGATGATCTAGTACTACAACTCTGAATTTCTTAAATTTCATCAGCTATTATGATAATAACTTAATAG
AGATCTTCTTATAAGAAGAAACTCAGATGCAACTTCTGTTAGCACCAAGTACTATCCTACTATCTAGGAACTATTGCATA
TCAGTGGCTCAGTTCTAGCTTATCTTCTTCCCAGAATGAATGTTGTAATT-CAGAATTAACGTATTGCTGGATGGTTTGT
GATCGTTTGGGATGTTTTGCAGCTCACACATCAAGACAATAAATAGAGCCTTGTCTGTTTGGGGCCAATCAAACCAAACA
ACAAGTTCATGTCTGATCTCGACGTCCAGGTTCCAACTGCTTTTGGTATGCACTCATTTCATTATCTCTTCATTAGGGAA
TCACA-------CCTGCCAATCTAGATCAATTT--GAGTCCTTAACCTGTAGATTTTGTTTATTTACGTTCTCTCTCCCG
CTGAATTAACCTAATAGACTGCTCTCAATATCTAATCTCATTAACCAACAGCATGCCATTATCTAGTTGATTATAAGTTG
TTGTATACCAACATATATGTATCATGCTGGACAAGAGCTTTTGCTAACCTTCCCTAGAGGTGGCACAGGTACATAGCTTA
GCTGCATTAATGAAGATGCACAGTCACAGATCACTGTATTAC--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAACATGGATCATTTGTTTTGCCTATAAATAACCTA
TATAGATTGTCTTTTCTTACGTTCTCTCTTACCCTAAATTACCTAATAGACTGTTCTCAATATCTAATTCTATTAACTAA
CAGAATACCACATCTAGTTGATCATGAGTTAGTAGTAGTTGTTGTATACCAACATACATTTATCATGCTGGACAAGAGCT
TTTCCTAACCTTCTCTAGAGGTGGCGCTGA---------TGCATATCTTATCTGTATTAATGAAGATGTGTGTCCACAGA
TGACTATGCCACAGAAA--CATGCATCTTTTTGGTTTG-CGTACAGT---ACACTGATTTGTGTATCCTCTGGTTGCCTT
GCCTAAGTATATCCTCTACCCAGAAGTTGACTTGGCATCTTCTTTGTAGATCCGTTTGCTGAGGCAAATGCTGAGGACTC
CGGCGCTGGTGCTGGATCAAAGAACTATGTGCATGTGCGTGTCCAGCAGCGCAACGGAAGAAAGAGTCTGACAACTGTTC
AGGGTCTGAAGAAAGACTACAGCTACAACAAGATTCTCAAGGATCTCAAAAAGGAATTCTGCTGTAATGGTACTGTAGTC
CAGGATCCAGAACTAGGCCAGGTACAGCGAGGTTCTCTTTTTTTGTTGGTAGCAAAATTCTCTCATCTAAGTGTGTATAT
GCTGATGAGTTATCTTCTATATTTTCAGGTCATCCAACTCCAAGGTGATCAGCGTAAAAATGTTGCTACTTTTCTAGTTC
AGGTAATTTACAATGCCATTTTATATTGTCATGCATATTGACTGTTGCGTCGTTCATCTTCTTAATTTGA----CAATTC
CTGTTTGGTTAGGCTGGACTTGCAAAGAAAGAGAGCATCAAGATTCACGGATTTTAGGCAACACACAAATGCTCGTGTGC
TGTCACCGAAGCCTGGAAGTTGTCGTATACTTGGTATTGTCACATCTAAGA-CATTTGAATTGCTAGTACTCGTGTGAGG
CATCTGTGTTTGATGCACTTTTACATCCAAGACATTTGAATTTGCATCGGTGTGTTGATGCAAGTTGTCCTTCAACATGG
TTTGTATGCGCCACCAGTATGGCAGTATGGTTTATCCAGGTTATTGTGCACTAAATAAATGTACTTCAGGCTTATCTTCT
CATGGTTGTGTGCATTGTGTGCTCTGTTCGTTT-TTTTTTTGTTTGTTTTCTCGAATTTGTTTATTTTCTCATGGTTGTG
CTCAGTCGTTGCCTTGGCCAGGGGCACTCCCTCCTTTTTGTTTTTGAGGGGTTCCTTTTTTTCTTTTCTTGACATGACAC
ATTGGTGGAGATAGTTTCTTAGGGCCATCTAGTTTTAAGCTTGGCAATGTTTATCAGGAAATCATTGGGATCACCTGACG
GAGCACGACACGTGCGTCCATCATCTCTGTGGCCGTTGGATCAGATTTTAATGAGATGGCAAGAAGCAACGTATTACCTA
A-----TTTTTGCAACTGAGTGGCTGTTTTGATTTCTCCCACCGCAACAACTGTGTGTTGCGGCAACTGTGTGTTGAGGG
ATCTGAAACTGGATCCCCTTGAGAGCAGCCACCACCCATGCTCCTCCAAAGCACTCCCGACGCGCCATCGCTCACGCCAG
------------CGGGCACACCCGTCTTGCCACCGCCAAACACCCCCGTTGTGCCATCGCTGATGTC-GCCGAGCACGTG
CTTCGCCGTCGTGGTTGTCGGTCGCGTCCACCACCATCCA--------------TCCTCTTCTCACGTTCATT-AGACCA
GGCGTTGGTAGCCGCGCCACCGCCGAGCACCCCGCT---GCCACCGTTGACGCTGGCAAGCACGCGCTCCTCCATCGCGA
TCGTCGATCGCCTCCACCACCATCAACCCTCTCTCCTTCTCCCTCTTCGCTCCTT
>chr3A_1
CGCCGTCCGCGGTTCTCTCCACCGAACAAGGTGATTCCCCCCTCTCCTCGCCCTCCCCCCCGTCGGCCGATTCGACGTTT
CCGTGCTCCCCCGGGGTTCGATTTCTAGCGGTTGACTCCGTCTCGCGATCGGTTGTTGCGGTTGCGCCGTCT----GATC
GCCCGCTCCTAATCTCGCTCCGAGCCGACCAGATCTCAATGGGGCTGTTCGGTTGATTTGTTGGTGTGCCGATTTTTGGC
CCCAATCGGTT------------------------------GGTTTCCGCACCTGGTAGGCCGGTTTTCTGGAAATCGGG
CGTT-TGATATTGGGGATTCGCTTAGGTTTGCGGGCGCGATTTGAACCGATCTGTTCGTGCGAGCAGTTTAGATAAGTGC
CTTGTTTTT--TGTTGTCGGCGTATGTGATTGTGGGCTGGTTTAGATATTTCGTGATGCGTCTAGAACGATCAATTTTGG
AACATGCTGTTTGTGATTTAGGAAATTTGTGGGCTGATTTTAGGTTCTCCCTTGGTAGTTAATAAGGAGGTAAATTACTT
TGTATGGTCTTCTACTTTCTATGTGGATTTTGGAAGTGACCAAGGATGGGGC-TTGTGCTTGCGTTTTGCACACCGTCCC
TCGTTTTTTATGCTGAATGTCCTGTGCACTTAATTCGATGTTGTACTGTTGAGTACCCTCCGTATTGCGTGACTATATCT
GCCTTAGATATTTCGTG--------ACTATAACTCTGAATTTCTTAAATTTCATCAGCTATAATGATAATAACTTAATAG
AGGTCTT-----AAGAAGAAATTCAGATGCAACTTCTGTCAGCACCTAGTAATATCCTACTATCTAGGAACTATTGCATA
TCAGTGGCTCAGTTCTAGCTTATACTCTTCTCAGAATGAATGTTGAAATTTCAGAATTAACGTATTGCTGGACGGTTTGT
AATTGTTTGGGATGTTTTGCAGCTCACACATCAAGACAATAAATAGAGCCTCGTTTGTTTGGGGCCAATCAAACCAAACA
ACAAGTTCATGTCTGATCTCGACGTCCAGGTTCCAACTGCTTTTGGTATGCACTCATTTCATTATCTCTTCATTAGGGAA
TCACA-------CCTGCCAATCTATAGCAATTT--GAGTCCTTAACCTGTAGATTGTGTTTCTTTACGTTCCCTCTT-CC
CTGAATTAACCTA-TAGACTGTTCTCAATATCTAATCTCAGTAACCAACAGCATACCATTATCACTA-GATTATAAGTTG
TTGTATAGCTACATATATGTATCATGCTGGACAAGAGCTTTTGCTAACCTTCCCTAGA---GGCACAGGTACATAGCTTG
TCTGCATTAATAAAGATGCACAGGCACAGATCACTATATTAC--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAACATGGATCATTTGTTTTGCCTATAAATAACC--
TATAGATTGTCTTTACTTACGTTCTCTCTTACCCTAAATTACCTAATAGATTGTTCTCAATATCTAGTTCTATCAACTAA
CAGAATACCACATCTAGTTGATTATGAGTTAGT------TGTTGTATACAT------ATTTATCATGCTGGACAAGAGCT
TTTCCTAACCTTCTCTAGAGGTGGTACTAATGCATATCTTGCATATCTTATCTGTATTC-TGAAGATGTGTGTTCACAGA
TATCTATGTCACAGAAA--CATGTATATTTTTGGTTTGTCCTACAGTCTAACACTGATTTGTGAATCCTCTGGCTGCCTT
GCCTAT-TATACCTTCTACCGAGAAGTTGACTTCGCATCTTCTTTGTAGATCCGTTTGCTGAGGCAAATGCTGAGGACTC
CGGCGCTGGTGCTGGATCAAAGAACTATGTGCATGTGCGTGTCCAGCAGCGCAACGGAAGAAAGAGTCTGACTACTGTTC
AGGGCTTGAAGAAAGATTACAGCTACAACAAGATTCTCAAGGATCTCAAAAAGGAATTCTGCTGTAATGGTACTGTAGTC
CAGGATCCAGAACTAGGCCAGGTACAGCGAGGTTCTCCTATTTTGTTGAAT-CAAAGTTCTCTAATGTAAAGGTATATAT
GCTGATGAGTTATCTTCTATATTTCCAGGTCATCCAACTCCAAGGTGATCAGCGTAAAAATGTTGCTACTTTCCTAGTTC
AGGTAATTTACGATGCTATTTTATATTGTCATACATATTGACTGTTGTGCATA-CATCTTCTAAATTTGGGTGGCAATTT
CTGTTTGGTTAGGCTGGACTTGCAAAGAAAGAGAGCATCAAGATTCACGGATTTTAGGCAACACACAAATGCTCGTGTGC
TGTCACCGAAGCCTGGAAGTTGTCGTATACTTGGTATTGTCACATCTAAGACCATTTGAATTGCTAGTAGTCACGTGAGG
CATCTGTGTTTGATGCACTTTTACATCCGAGACATTTGAATTTGCATCGGTGTGTTGATGCAAGTTGTCCTTCACCATGG
TTTGTATGTGCCACCAGTATGGCAGTATGGTTTATCCAGGTTATTGTGCACTAAATAAATGTACTTCAGGCTTATCTTCT
CATGGTTGT---------GTGCTCTGTTCGTTT-TTTTTTGTTTG-----CCTGAATTTGTTTATTTTCTCATGGGTGTG
CTCCATAGGTGCCTAGGCCAGGGACACTTCTTCCTTTTTGTTTCTTGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_297
TGTCTGATA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATTGGGGATTCGCTTAGGTTTGTGGGCGCGATTTGAACCGATCTGCTCGCGCGAGCAGTTTAGATGAGCAC
CTTGTTTTTTCTGTTGTCGGTGTATGCGATTGTGGGTTGGTTTAGATATTTCCTGATGCA--TAGAACGGTCAATTTTAC
AACATGCTGTTTGTGATTTAGGAAATTTGTGGGCTGATTTTAGGTTCTCCCTTGGTAGTTAATAAGGAGGTAAATTATTT
TGTATGGTATTCTACTTTCTATGTGGATTTTGGAAGTGGCCAAGGATGGGGAGTTATGCTTGCGTTTTGCACACCGTACC
TCGTTTTTTATGATGAATATCCTGCGCACCTTCTTCGATGTTGTACTGTTGTGCACTTTC--------------------
--------TTCCATGATGATGTACTACTATAACTCTGAATTTCTTAAATTTCGTCAGCTATTATGGTAATAACTTAATAG
AGATC---------------------------------------------------------------------------
----------------------------------------------------------AACGTATTGCTGGATGGTTTGT
AATTGTTTGGGATGTTTTGCAGCTCACACATCAAGACAATAAATAGAGCCT-GTCTGTTTGGGGCCAATCAAACCAAACA
ACAAGTTCATGTCTGATCTCGACGTCCAGGTTCCAACTGCTTTTGGTATGCACTCATTTCATTATCTCTTCATTAGGGAA
TCACAATTGACACCTGCCAATCCATAACAATTGGAGAGACCTTAACCTGTAGATTGTGTTTCCTTGCATTCTCTCTTGCC
CTGAATTAACCTA-TAGACTGTTCCCAGTATCTTATCTCATTAACGAATAGCATACCATTATCTAGTTGATTATGAGTTG
TTGTATACCAACATATAT-TATCATGCTAAAA-------------AACCTTGCCTAGAGGTGGTACTGATACATAGCTTA
ACTGCATTAATAAAGATGTAGATTCAGGGATCACTGTATTATACTCCCTCCGTTCCTAAATACAAGTCTTTGTAGAAATT
TCACTATAGACCACATACGGATGTATATAGATGCATTTTAGTGTGTAGATTCATTCATTTTGCTCCGTATGTGGTCCATA
GTGAAATCTCTCCAAAGACTTATATTTACGAACGGAGGGAGTAGAAAAATGGATCATTTGTTTTGCCC--AAATAACC--
TATAGATTGTCTTTTCTTATGTTCTCACTTACCCTAAATTATCCAATAGACTGTTCTGAATATCTAAATTATGAGT----
-----------------------------------TAGTTGTTATATACCAACATACAGTTATCATGCTGGACAAGAGCT
TTTCCTAACCTTCTCTAGAGGTGGTACTG---------------ATCTTATCTGTGTTAATGAAGATGTGTGTTCACAGA
TAAGCACAAAAACATGGATCATGGATCTTTTTTGTTTG-CCTACAGTCTAACTCTGATTTATGAATTCTCTGGTTGCCT-
----------ACCCTCCACCCAGAAGTTGACATTGCATCTTCTCTGTAGATCCGTTTGCTGAGGCAAATGCTGAGGACTC
CGGCGCTGGTGCTGGATCAAAGAACTATGTGCATGTGCGTGTCCAGCAGCGCAACGGAAGAAAGAGTCTGACAACTGTTC
AGGGCTTGAAGAAAGACTACAGCTATAACAAGATTCTCAAGGATCTCAAAAAGGAATTCTGCTGTAATGGTACTGTAGTC
CAGGATCCAGAACTAGGCCAGGTAGAGTGAGGTTCTCCTATTTTGTTGAAG-TGAAGTTCTCTCATTGGAAGGTGTATAT
GCTGATGAGTTATCTTCTGTATTTTCAGGTCATCCAACTCCAAGGTGATCAGCGTAAGAATGTTGCTACTTTCCTAGTTC
AGGTAATTTACGATGCCATTTTACATTATCATACATATTGACTGTTGCGTCGTTCACCTTCTTAATTTGA----TAATTT
CTGTTTGGTTAGGCTGGACTTGCAAAGAAAGAGAGCATCAAGATTCACGGATTTTAGGCAACACACAAATGCCCGTGTGC
TGTCACCGAAGCCTGGAAGTTGTCGTACACTTGGTATTGTCACATCTAAGA-CATTTGAATTGCTAGTAGTCGTGTGAGG
CATCTGTGTTTGATGCACTTTTACATCCAAGACATTTGGATTGGCATCGGTGTGTTGATGCAAGTTGTCCTTTACCATGG
TTTGTATGCGCCACCAGTATGGCAGTATGGTTTATCCAGGTTATTGTGCACTAAATAAATGTACTTCAGGCTTATCTTCT
CATGGTTGT---------GTGCTCTGTTCGTTTGTTTTTTGTTTG-----CTCGAATTTGTTTATTTTCTCATGGTTGTG
TTCAATCGGTGCCTAGGCCA------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr2D_2699
--------------------------------------------------------------------------------
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--------------------------------------------------------GGAAATGATTGGGATCACCCGAGG
GAACACGACGCTTGCATCCGCCATCTCCGTGGTTGTTGGGTCAGATTTTAGTGTGATAGCTAGAAGCAACGTATTACCTA
GACTAGTTTTTGTAACTGAGTGTTTGTTGCGATTTCTCCCACCGCAAAAATAG---------------GTGTGTTGCAGG
ATGTGAATCTGGATCCCCTAGAGAGCAGCCACCACCCATGCTCCTCCAGAGCACCCCCGATG------------CACCAC
TGCTGACGCCGACGAGCACCCCCGTCGCGCCACCGCCAAGCACCCCCGATGTGCCACCGCTGACGCC-G-CGAGCACGCG
CTCCGCCGTCGTGGTTGTCGGCCGCCTCCACCACCATCCACCCTTTCTCCTCCTCCCTCTTCTCACCTTCATCCAGACCA
ACCGCTGGCAACCACACCGCCGGCGAGCACCCCCGTTGCGCTACCGCTGACGCCGGCGAGCACGCGCTCCGCTGTCGCGG
TTGTCGGCCGCCTCCACCACCATCAACCCTCTCTCCTCCTCCCTCTTCTCTCCTT
>chr2B_2708
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-----------------------------------------------------------------TGGGATCGCCCGATG
GAACATGACGCGTGCGTCCGCCATCTCCGTGGCCGTTGGATCAGATTTTAATGAGATGGCTAGAAGCAACACATTATCTA
GGCTAGTTTTTGCAACTGAGTGGTTGATGCGGTTTCTCCCACCGCAACAACTC---------------GTGTGTTGCGGG
GTCATAATCTGGATCCCCTCGAGAGCAGCAACTACCCGTGCTCCTCCAAAGCACACCGGATG------------CGCCAG
------------CGAGCACCTCCGTCGCACGACCGCCAAGCACCCCAATTGTGCCACAACTGACGCCGG-CGAGCAAGCG
CTCCGCTGTTGTGGTCGTCGGCTGCCTCCACCACCATCCACCCTCTCTCCTCCCTCCTCTTCTCACCTTCATCCAGACCA
GGCGCTGGCAGCCGCATCGCCACCGAGTACCCCTGCCGCTCCACCGTTGATGTCGTGAGCAC--CGATCTGCCATCGCGG
TCGTCGGCCACTTCCACCACCTTCAACCATCTCTCCTCCTCCCTGTTCTCTCCTT
>SNPs
---------------S-S------S-----------SS-----------------------S-----------S------
--S----------S--S---------------S--------------------------------------SSSSS----
-------------------------------------S--S--------S-----S---S-S------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----S-S---S-S-------SS---SS--
SSS-S----------------------SS-----S--------------------S-------S----------------
------S------------S-S-------------S------S-SS------------S-----------SS---S----
S--------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-----------S-------------------
------S-------------S--S-----S--------------------------------------------------
-------SSSSS---------S-----------------S------S----S----------------------------
-----------------------SS-----S--------------S----------------------------------
S--S-----------------------------------------------S----------------------------
--------------------------------------------------------------------------------
------------------------S-S----------------------------S-----S--------------SS-S
-------------S-------S--------------------------------S-------------------------
--------------------------------------------------------------------------------
S----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------SS
-------------------------------------------------------------------------S------
----------------------S----------SS---------------------------------------------
------------------------SS-----------------------------------------------S------
-S------S--------------S----------------S----------------------S----------------
-----SS----S---------------------S----------------------------------------------
--------------------------------------------------------------------------------
----SS--------------------------------------------------------------------------
-------------------------------------S-S--------SSSS----S---------S---SS--------
------------------------------------------------------------------------S-------
-----------S--------------------S----------------------------------------------S
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
---------SSSSSSSSS----------------------SS--SSSSSS------------------------------
----S---S-----S--------S----S-S------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------S--S-
--S------S---------SS------S--------------------------------S-------------------
S----------------------S----SS-----------------------SSSSSSSSSSSSSSS--------S---
-------S-----------S----------------------------------S-----S-SSSSSSSSSSSS------
--------------S----S------SS-----------S----------------S------S-S---S--------S-
--S------------------S---S----------------------------------------S-----S-------
----S---S------S--S--------------SS------------------S----------------S--------S
------SS-----------------------------S----------S------
>forward_267
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GGTTTGTTTTGTGCGGTGGA-----------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_1904
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------TATCCTCTGGTTGCCTT
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_275
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------TTGTGCGGTGGATGATGAGT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_2400
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
CTGTTTGGTTAGGCTGGACT------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1926
--------------------------------------------------------------------------------
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------------------------------------------------------------------CCTCTGGTTGCCTT
GCCTAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_2980
--------------------------------------------------------------------------------
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-------------------ATCATCTCTGTGGCCGTTGG-----------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
