>input_sequence_57159
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----ATGAGCAGCTTGGCCCTCTTCTCGCCAAGCTCCTCCTCCTCCTCTCTGTTCCTCACAAAGCAGGCCAACCCTACCA
AGGGGAGGGCGCCTACGGTTGTGAGGTGCAGCTATGGGCCCACCCTGTCAGGATCACATGAAGAAGAGGGGAGAGAGGGG
GTGATGGTGGCCTTGGTAGGGAGGAGAAATGCACTGGCCTCTGCAGCAGCAGCTTGTGGAGTTTCGGTGCTTGGCTTTGC
AGGCGATGGCCTGGCAGCGGCCAAGCAGGGCCCGCTGGCAGGGAGGATCCCCGGGCTGTCTGGCCCTGATCAGAATGGTT
GGTTCTT----GCTGCCACCTTGATCTACTAATTCCATGTGATATACTCCGTAGGATGTTTTTGTTCTTGCTAGTTCAGT
TCAGAGGAAGT----------------CTTCCATATTCTCATGGTGCATGTCATAAGGATGTAATTTGTTCAGATAGGTT
GGAAAACATACCGCAGGCCGGACGAAAAGTCTGGCGGCCACGGAGTCGGCTGGAGCCCGATCATCCCGTACAGCTTCAAA
GTTCCTGATGGCTGGGAAGAGGTGAGAACTCGAGCTACCGACAGAAATTCGGTCTTCAGAACATGCTTGGTCACACAATC
TCTGATGCAAAACTCGTGTTCTAATGTAGACACCAGTGTCGATTGCTGATCTCGGTGGCACGGAGATCGACCTGCGGTTC
GGAAACCCCAAGGAGGGCCGATTATCTGTCATTGTAGCGCCCACTCGTAGGTTTGCAGGTGAGCCCTCAAGAAATTGTTC
TTTCCTGGCATACTCATTTCTTAGTGTGGTAACTGTCTCACGGTACTGACTAGCATGCTGAAACTGCCAAGATGACCTTG
ATGATGCAACAATCGAGAAGATCGGCACACCGGAGAAGGTGATCAACGCCTTTGGACCGGAGGTCATCGGCGAGAATGTG
GAAGGGAAGGTTCTGTCCACAGCCACAGCTGAGTACTCCGGAAGAACTTACTACCAGTTCGAGCTGGAACCACCTCACAT
CTTCATCACAGCTACGGCTGCTGGGAATAGGCTCTACCTGTTCAGCGTAACTGCAAACGGTGAAATAACTGTCCTTATCA
CTATATAGTGTTGATTTCTGTGGTCACTTTTCTCATC---AAAAGGAATTATGTAT-TTTTGCAGGGCTGCAATGGAAGA
GGCATTACAAGGATCTGAAGCAAATAGCAGAATCATTCCGCGTAGTCTAG------------------------------
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------------
>chr2D_1_TraesCS2D01G352700
GGGTTGCCGGTGGAGCCCGACGAGGGCGAGCGGCTCCTCACTTGGGTCTACCGTCGGTCGTTTACGACGACAGATACGGA
CGCTTGACGACTCCGTCAGAAGAACGCCAAGGCGCTCCAGCTTGCCATTAAGCAGTCGGAGCGTGAGGCGGCGGA-----
---------------AGCGGCTCGGGTGGCGAAGCTCA-GCGGTAGCAAGACAGAGTCGTCGGGCGGCTCAAAGGGCTCA
TCGTCCTCTCCGACTCCTCCTCCGA------TGACGTCGACGACCACAACGCCTTCTCCGACGACTCGGACGATTCTCCA
CCAGCCGCCGACGCCTACAGCTACATCGTCGGCCGAAAGGGGAAAGGACCGGTGAGGAAGTGGTGAAGATCCGCCGTCTC
CA-CTTTAATTTCAAGTTTTTAT--ATGTAGTTTAAACTTTGTCGTCGT-TTATGTGCATTATTTGAACTTTGGCGATCT
TTTGAAGATCCGTTGGTGATTTTTTGGTGAACGGATTGTGTATTTCTATGTCCGATTCTACGTCCG-TCTTATGATCTAC
ATA-GTTTTATCCATGTTGCATGGTTTAGTATAGATGTAGGGGATTGGATATGAGATACACGGATGTGAATGACTCAATT
TGAGGACTGACCGGTCAG--CCCGTGGACGTGCCTGGACGCGTCCGCGAGCGTTTGAGGGCCCGGATTTTCGGCTGTAGA
TGCTCTTATTTACTCAGATTTTACGTGCAAAGCCAAAGCCAAAAGTGAAAAAAAAAA-----TCCAATTGAGCTAGGCAC
GGCAGAAAACAAACTGGGTAAAGGTGAGATGTTTGGTCTCAACCCTCAACCCCTCCTGGCCACTCATCGCCTGCGGCCCA
CAGCAGCCCGC--GGAGTATGTATGATGAAGATGAACCGAACAAAA-AGAGATAATTCTCTCTAGGCAAAACCAGAAGCA
GCAGCAGTACCCAAGAAACAC-ACAGGCAGAGCCGAATCACACACACCCTGCAGGAGAGGCAGGAACACTTCTAGCTAGC
AGAGATGAGCAGCTTGGCCCTCTTCTCGCCAAGCTCCTCCTCCTCCTCTCTGTTCCTCACAAAGCAGGCCAACCCTACCA
AGGGGAGGGCGCCTACGGTTGTGAGGTGCAGCTATGGGCCCACCCTGTCAGGATCACATGAAGAAGAGGGGAGAGAGGGG
GTGATGGTGGCCTTGGTAGGGAGGAGAAATGCACTGGCCTCTGCAGCAGCAGCTTGTGGAGTTTCGGTGCTTGGCTTTGC
AGGCGATGGCCTGGCAGCGGCCAAGCAGGGCCCGCTGGCAGGGAGGATCCCCGGGCTGTCTGGCCCTGATCAGAATGGTT
GGTTCTT----GCTGCCACCTTGATCTACTAATTCCATGTGATATACTCCGTAGGATGTTTTTGTTCTTGCTAGTTCAGT
TCAGAGGAAGT----------------CTTCCATATTCTCATGGTGCATGTCATAAGGATGTAATTTGTTCAGATAGGTT
GGAAAACATACCGCAGGCCGGACGAAAAGTCTGGCGGCCACGGAGTCGGCTGGAGCCCGATCATCCCGTACAGCTTCAAA
GTTCCTGATGGCTGGGAAGAGGTGAGAACTCGAGCTACCGACAGAAATTCGGTCTTCAGAACATGCTTGGTCACACAATC
TCTGATGCAAAACTCGTGTTCTAATGTAGACACCAGTGTCGATTGCTGATCTCGGTGGCACGGAGATCGACCTGCGGTTC
GGAAACCCCAAGGAGGGCCGATTATCTGTCATTGTAGCGCCCACTCGTAGGTTTGCAGGTGAGCCCTCAAGAAATTGTTC
TTTCCTGGCATACTCATTTCTTAGTGTGGTAACTGTCTCACGGTACTGACTAGCATGCTGAAACTGCCAAGATGACCTTG
ATGATGCAACAATCGAGAAGATCGGCACACCGGAGAAGGTGATCAACGCCTTTGGACCGGAGGTCATCGGCGAGAATGTG
GAAGGGAAGGTTCTGTCCACAGCCACAGCTGAGTACTCCGGAAGAACTTACTACCAGTTCGAGCTGGAACCACCTCACAT
CTTCATCACAGCTACGGCTGCTGGGAATAGGCTCTACCTGTTCAGCGTAACTGCAAACGGTGAAATAACTGTCCTTATCA
CTATATAGTGTTGATTTCTGTGGTCACTTTTCTCATC---AAAAGGAATTATGTAT-TTTTGCAGGGCTGCAATGGAAGA
GGCATTACAAGGATCTGAAGCAAATAGCAGAATCATTCCGCGTAGTCTAGGGTGGTTCCACTGGGTTCGTTCATCACATA
ATCTGTTTCATTACTAGAGAAAATGAGGGATGCCGTTATGTAAAGGGAGGGTAAGTACACATCATTTGTAACGATGATTT
TGTAGCTGAAGAAATTGAACATTGTATGTAAGCTTCCTCTTCTAGTTACAGTAAGAATTCAGACCTAAAGGTGCCTTCAG
G-GGCGCATATAACAACTTCCAGGCCAAAACGCATAAATGCGCGTTTTAAGTTTCCTTGGCTATAGCCTACTACAGGTCA
AATCTATATGACTGGCAATGAACTGATAGACTGATACATGTAGAGTTGTTTCACTGCACTTGCCGGCCTCCATATACTCA
TATAGGGTTCTTACATCTAGATCAGGGAAAGAATGATGCCCTTGCCTGACTTGTGTGAACGCGTCATGGAGTATGAGTGT
GATTTAAACTTTCAAGGCATCACTAGAGCTCCAGTATATGTGA-------------------------------------
------TATGTAGCTGTAAATAAGAACAGTTCAAAGTTCACTCAAATGGTTCTAGGATATGCTAA--------AGTTTGA
T-GAATAAAGCAATACAAATGACTACAGAATGATAT------------------------GAGCAGCAACTACAACATAA
ACAAAAAATATATATAGTGTATACATAATAACCTCATGGGTAACCTAAAAGGAAAATCTCAATCAGAGTCATAGAAGAAC
CAGCATTATGCTAGAGTTGCTGAAAGCATTATCATTAAATCGATATTCACAGGCAAGCTAGAACAGA-AAGTTAACTCTA
GGGTAGGAA-GGGACTCCCCTCCCGATATCTTAAAAATTGCTCTA---TGGTTAACTTTTGCTGTACTTGGGTCTTCATA
CAACACATATTTTTCATGTAGTTGTCAGAAGATTGAAGAGACAAAATAACTATTAGCAAATGACTCATTTATATGATTTA
AACTACTTTTGATTCAAAAGTAAGTTACCTCCAAACTAACAAGTCTAGTATAATGCTGCTAGAGGACAGTGGCATACCTT
TACACCATCATC
>chr2D_1
GGGTTACCAGCCGAGCCCGACGAGGACGAGCGACTCCTTGCGTGGGTCTACCATCGATTTCTTACGACGGCGGAGACGGC
CGCTTGGCGGCTCCGCCGGAAGAATGCGAAGGCTCTCTGGCTTGCCATCAAGCAATCCGAGCGCAAGGCCAATGAGAAGG
CGACAGAGGCGGCTCGGC--------TGGCGAAGCTTAAGCAGTAGCAGGATCGGGCCGTCCAGCGGCTCAAAGGGCTCA
TCGTCGTCTCCTCCTCC------GA------CGACGACGACGACCATAGCGCCTCGTCCGACGACTCGGACGATCCTCCA
CCAGCCGCCGACAGCTACAATTGCGACGGCGACCGGAAGGGGAAAGGGCCGGCGAGGAAGTGGTGAAGATCCGATTTCTT
CA-ATTTAATTTCATGTACTTAG--ATGTAGTTTAAAGTTGTCTGTCAT----------TTGTGTGAACTCTGGTGGTCT
TTTGAACATCCGTTCATGATCTTTTGGTGAACGTATTGTGCTTGCCTATGTCT-------------ATTTGATGATCTAA
GTA-GTTTGATTGACGTTGCATGGTTTAGTATGGATATAGAAGATCGGATATGAGGTACACAGATGTGGATGACGCGATT
TGAGGAGTCACCGGCCAG--CCCACAGACGCAGCCGGACACGTCCGCGAGCGTTTGAGGGCCCGGATTT-----------
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------------
>chr7A_1
GGGTTGCCAAAGGAGCCCAACGAGGACGAGCGGCTCCTTGCTTGGGTCTACTGCCGGTCGCTTCTGACGGCGGAGACGAA
CACTCGGCGGCTCTGTCAGACGAACACTAAGGCGCTCCAGCTTGC-ATTGAGCAGTCGAAGGGCAAGGTGGCGGAGGCA-
--------GCGGCTCGGG--------CGGCGAAGCTCAAGCGGTAGCAGGACGGGGCCATCCGGCGGCTCAAAGTGCTCA
TCGCCCTCTCTGACTCCTTGTC---------------CAACGACCACAACGCCTCCGACGACGATTTGGATGATCCACCA
CCAGGCGCCGACGCCTACAGTTGCGTCGTCGACCGGAAGGGCAAAGGGCCGGCTAGGAAGTGGTGAAGATCCACCGTCTT
CA-CATTAATTTCAAGTTTTTAGTAATTTAGTTTAAGCTTGTCCATCGT-CTATGTGCATTATGTAAACTTTGGTGATCT
TTTGCAAATCCGTTGGTGATCTTTTGATGAACGGATTGTGCATTTCTATGTCCGATTCTATGTA-CATTGCACGATCTGC
ATA-GTTTTATCCATGTTGCATGGTTTAGTATGGATATAAGGGATCCAATATGAGATACACGGATATGAACGACACGAGT
TAAGAATGGACCGGTCAGTGCCCATGGACTCGCCCGGACGCTTCGGCGGATGTTTGAGGGCCCGGATTT-----------
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------------
>chr7B_1
GGGTTACCGGCGGAGCCCGATGAGGACGAGCGGCTCCTCGCGTGGGTCTACCGCTGGTCTCTTACAA-GGCAGAGACGGA
CAGCCGACGACTCCGTCAGAAGAACGCCAAGGCGCTCCGACTTGCCATTGAGCAGTAGGAGCGCGAGGCGGCAGAGGCAG
CGGCGCAGGCAGCTTGGC--------TGGTAAAGCTCAAG-GGTAGCATGGCAAGGTTGTCCGGCGGCTCAAAGTGCCAA
TCGTCCTCTCTTACTCC------GACTCCTCCGACGGCGACGACCACGACGCCTCGTCCGACGACTCAGACGACCCTCCA
CCAGCTGCTGACACCTACAGCAACGCCCTCGGTCAGAAGAGGAAAGAGTCGGCGAGGAAGTGGTGAAGGCCCATCTTCTC
CA-CCTTAATTTCAAGTTTTTAG--ATGTACTTTAAATTTGTCGGTCGTATTATGTGCATTACGTGAACTTTGACTATCT
TTTGAAGATCCGGATGTGAT------GTGAACGGATTGTGCATTTGTATGTCGT-TTCTATGTGCGC--TCGTGATCTTC
GTAGTTTTTATCAACGTTGCATGGTTTAGTATGGATATAGGGGTTCGGATATGAGATACGTGGATATGGGCAACAAAATT
TGAAGACGGTCCGGCCAGTGCCGGCGGACGCGCCTGGACGCGTCCGCGAGCGTTCGTGGGGCCAGATTT-----------
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------------
>chr1B_5
TGCAGGAGGAG-----CCGACAAGTACGCGCGGCTCCTCAAATGGGTCTAC-GCCGGTCTCTTACGACCGCAGAGACAGA
CGTGCGGCGGCTCCGCCGAAAGAACGCCAAGGTGCTCCGGATTGCCATTGAGCAGTCCGAGCGCGAGGCGGCGGT-----
-------GGCGGCTCGGC--------TCGAGAAGCTCAAGCTGCAGCGGGACAGGGAGGTCCGGGGGCTGAAATGGCTCA
TCATCCTCTCCGACACG------------TCCGACGACGACGACCATGGTTCCTCGTCCGACGGCTCAGACGATCTGCCA
CCAGCCGCCGACGCCTACAGCTACACCGGCGACCGGAAGGGCAAAGGGCCGGCGAGGAAGTGATAAATCTTCGTCCTCTC
CATCTTCAATTTTAAGCTTTTAGTAATCTAGTCTAAACTTGTCCGCCGT-TTATGTGAATTATGAGAACTTTGGCGATCT
TTTAGACATCCGTC-----------GGTGATCGAAATGTGCATTTCTATATCCGATTCTATCTTT-ATATGATGATCTAT
GTT-TTTTTATTTATATTGCATGC--TAGTGTGGATACGAGGGACCGGATATGACATACACGAATATGGACG---AAATT
TGAGGAATGCCCGGTCAATGTTAGTGGACGCGCCCGGGTGCATCCGCGGGT-TTTGAGGGACCGGATT------------
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------------
>chr3D_77
----------------------------------------------------------------------------CGGA
CGCTCGGTGACTCAGCCGGAAGAACACCAAGGCACTCTGGCTTGCCATTAAGCAGTCGGAGCACAAGGCGGCGAA-----
---------------GGC--------TGGCGAAGCTCAAGTGGCAGCAGGACATGGTCGTCCAGCGGCTCAAAGGGATCA
TCGTCCTCTCCAACTCCTAGTC---------------CGACGACCACGGCGCCTCCTCCGACGGCTCAAACAATCCACCA
CCAACCGCCGACGCCTACAGCTACGCCGTCGA----AAGGGCAAAGAGCCAGCGAGGAAGTGGTGAAGATCCGGCGTCTC
CA-CTTTAATTTCAAGTGCTTAGTAATGTAGTTTAAACTTATTCGTCGT-TTATGAGCATTATGGGAACTTTGGCAATCT
TTTGGAGATCCGTTGTTGATCTTTTGGTGAACGGATTGTGTATTTA------------TACGTC-CATTTCATGATCTAC
ATA-GTTTTATCCATGTTGCATGGTTTAGTATGGATGTAGGGGATCGGATATGAGATATATCGATGTGGACCACATGATT
TGAGGACTGACCGATCAG--------------------------------------------------------------
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>chr2A_377
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----TTTAATTTCTAGTTTTTAG--ATGTAGTTTAAACTTGGCCGTCGT-TTATGTGCATTATGTAAACTTTGGCGGTCT
TTTAAAGATCCGGTGGTGATCTTTTGGTGAACGGATTATGCATTTCTATGTCTGATTTTATGTCTCATTTCATGATCTAC
ATA-GTTTTATCCACGTTGCATGGTTTAGTATGGATATAGAGGATCGGATATGAGATACACGGATGTGGAAGACCCAATT
TGAGGACTGGTCGGTCAGT-------------------CGCGTCCGCAGGCATTTGAGAGCCCAGATTTCCGGCTGTAGA
TTCTCTTATTTACTCAGATTTTATGTGCAAAGCCAAAGCCAAAAGTAAAAAAGAAATGATTTTCCATTCGAGCCAGGCAC
GGCAGAAAACAAACAGGGCAAAGGTGAGATGTTTGGTCTCAACCCTCAAACCCTCCTGGCCACTCATCCCCTGCGGCCCA
CAGCAGCCCGC--GGAGTATGTATGATGAAGATGAACCGAACAAAAGAGAGATAATTCTCTCCAGGCAAAACCAGAAGCA
GCAGTTCC------CAAGAACAACAGGCAGAGCCGAATCACACAGA---------------AGGAAGACTTCTAGCTAGC
AGAGATGAGCAGCTTGGCCCTCTTCTTGCCAAGCTCCTCCTCCT---CTCTGTTCCTTACAAAGCAGGTTCACCCTACCA
AGGGGAGGGCGCCTGCGGTTGTGAGGTGCAGCGGTGGGCCCACCCTGTCAGGATCGCATGAGGAGGAAGAGAGAGAGGGG
GTGATGGTGGCCTTGGTAGGGAGGAGAAATGCACTGGCCTCTGCAGCAGCAGCTTGTGGAGTTTCGGTGCTTGGTTTTGC
AGGCAATGGCCTGGCGGCGGCCAAGCAGGGCCCGCTGGCAGGGAGGATCCCTGGGCTCTCTGGCCCTGATCAGAATGGTT
GGTTCTTACTTGCTGCCATCTTCATCTGTTAATTCCATGTGATA------------------TGTTCTTGGTAGTTCAAC
TTAGAGCAGATCAGACTTCAGATACGCCTTTCATATTCTCGTGGTGCATGTCGTAAGGATGTAATTTGTTCAGATAGGTT
GGAAAACATACCGCAGGCCGGATGAAAAGTCTGGTGGCCACGGAGTCGGCTGGAGCCCGATCATCCCGTACAGCTTCAAA
GTTCCTGATGGCTGGGAAGAGGTGAGAACTGGAGCTACTGGCAGAAATTTAGCTTTCAAAACATAGTCAGTCACACACTT
TCTGATCCAAAAGATGTGTTCTGATTTAGACACCAGTGTCGATTGCTGATCTCGGTGGCACAGAGATCGACCTGCGGTTC
GGAAACCCCAAGGAGGGCCGACTATCTGTCATCGTAGCGCCCACTCGTAGGTTTGCAGGTGAGCCCTGAACAAACTGTTC
TTTCCTGGCATATTTTGTAGC----GTGGTAACTGTCTCATGGTACTGACTATCATGCTGAAACTGCCAAGATGACCTTG
ACGATGCAACGATCGAGAAGATCGGCACGCCGGAGAAGGTGATCAACGCCTTTGGACCGGAGGTCATCGGCGAGAATGTG
GAAGGGAAGGTTTTGTCCACAGCCACAGCAGAGTATTCCGGAAGAACTTACTACCAGTTCGAGCTGGAACCACCCCATAT
CTTCATCACAGCTACGGCTGCTGGGAATAGGCTCTACCTGTTCAGCGTCACTGCAAACGGTGAAATAACTGTCCTTATCA
CTATATGGTGCTGATTTCTATGGTCACTTTTCTCATCTTGGAAAGGAATTATGTAT-TTTTGCAGGGCTACAATGGAAAA
GGCATTACAAGGATCTGAAGCAAATAGCAGAATCATTCCGCGTAGTCTAGGGTGGTTCCATTGGGTTCGTTCATCACGTA
ATCTGTTTTATTATTAGAGAAGATGAGGGATGCCGTTATGTAAAGGGAGGGTAAGTACACATCATTTGTAACGATGATTA
TCTAGCTGAAGAAATTGAACATTGTATGTAAGCTTCCTCTTCTAGTTACAGATAGAATTCAGACCTAAAGGCGCCTTCAG
G-G-CGCATATAACAACTTCCAGACCTGAATGCATAAATGCATGTTTGAAGTTTCCTTGGCTGTAGCCTACATGTCTAAT
CC-----ATGACTGGCAGTGAACTGATAGACTGATACATGTAGAGTTGTTTCACTACACTTGCCGGCCTC--------CA
TATAGGGTTCTTAGATCTAGATCAGCGAAAGAATGACGCCCTTGCCTGACTTGTGTGAAGGCATCATGGAGTATGAGTGT
GATTTCAACTTTCAATGCGTCACTAGAGCTCCAGTGGCCGAACTGAAACACCTAATATAGGCTGAGCAGCTGAGTATATG
TGACAGCATGTAG-TGCAAATAAGAACAGTTCAAAGTTCATTCAAATAATTCTAAGATATGCTAACTTGCTAGGGTTTGA
TGAAATGCAGCAATACAAATGGCTACAGCATGATATACAAACGGCTAGAGCATGATATAAGAGCAGTAACTATAAAACAT
TTAGAAAATG------GTATATGCATAATAACCTCATGGGTAACCTAAAAGGAATATCTCAATCATAATCATAGAAGAAC
CAGCATTAAGCTAGAGTTGTTGAAAGCATTATGATTAAATCAATATTCACAGGCAAGCTAGAACAAA-AAGTTAACTCTA
GGGTAGGAAGGGGACTCTCCTCCCAATATCTTAAAAATTGCTCTAAAGTGGTTAACTTTTGCTGTACTTAGGTCTTCATA
CAACACATATTTTTCATGTAGTTGTCAGAAGATTGAAGAGACAAAATAACTATTAGCAAATGACTCATTTATATGATTTA
AACTACTTTTGATTCAAAAGTAAGTTACCTCCAAACTAACGAGTCTAGTATAATGCTGCTAGAGGATAGTGGCATACCTT
TACACCATCATC
>chr2B_765
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----GAAAACAAACTCGGTAGAGGTGAGATGTTTGGTCTCAACCCTCAAACCCTCCTGGCCACTCATCCCCTGCGGCCCA
CAACAGCCCGTGTGGAGTACGTATGATGAAGACGAACCGAACAAA--AGAGATAATTCTCTCCAGGCAAAACCAGAAGCA
GCAGCAGCAGTGCACAAGAACAACAGGCAGAGCCGAATCACACAG--CCTGCAGGAGGAGCAGGAAGACTTCTAGCTAGG
AAAGATGAGCAGCTTGGCCCTCTTCTCGCCAAGCTCCTCCTCCTCCTCTCTGTTCCTCACAAAGCAGGCCCACCCTACCA
AGGCGAGGGCTCCTGCGGTTGTGAGGTGCGGCAGTGGGCCCACCCTGTCAGGACCACATGAAGAGGAGGAGAGAGAGGGG
GTGATGGTGGCCTTGGTAGGGAGGAGAAATGCACTGGCCTCTGCAGCGGCAGCCTGTGGAGTTTCGGTGCTTGGTTTTGC
AGGCGATGGCCTGGCGGCGGCCAAGCAGGGCCCGCTGGCAGGGAGGATCCCGGGGCTGTCTGGCCCTGATCAGAATGGTT
GGTTC----TTGCTGCCATCTTGATCTACTAATTCCATGTGTTA------GTAGGATGTTTTTGTTCTTGCTAGTTCAGT
TCAAAGGAAGTC----------------TTTCATATTCTCATGGTGCATGTCATAAGGATGTAATTTGTTCAGATAGGTT
GGAAAACATACCGCAGGCCGGACGAAAAGTCTGGCGGCCACGGAGTCGGCTGGAGCCCGATCATCCCGTATAGCTTCAAA
GTTCCTGATGGCTGGGAAGAGGTGAGAACTGGAGCTACTGACAGAAATCCAGCTTTCAGAACATAGTCAGT--CACACAT
TCTGATGCAAAAACCACGTTCTGATTTAGACACCAGTGTCGATTGCTGATCTTGGTGGGACGGAGATCGACCTGCGGTTC
GGAAACCCCAAGGAGGGCCGATTATCTGTCATCGTAGCGCCCACTCGTAGGTTTGCAGGTGAGCCCTCAAGAAACTTTTC
TTTCCTGGCATATTTCGTAGCC----TGGTAACTGCCTCACGGCACTGACTATCATGGTCAAACTGCCCAGATGACCTTG
ACGATGCAACAATCGAGAAGATCGGCACGCCGGAGAAGGTGATCAACGCCTTTGGACCGGAGGTCATCGGCGAGAATGTG
GAAGGGAAGGTTCTGTCCACAGCCACAGCTGAGTACTCCGGAAGAACTTACTACCAGTTCGAGCTGGAACCACCTCACAT
CTTCATCACGGCTACGGCTGCTGGGAATAGACTCTACCTGTTCAGCGTAACTGCAAACGGTGAAATAACTCTCCTTATCA
CTATATGGTGTTGATTTCTATGGTCACCTTTTTCATCTTGAAAAGGAATTGTGTAACTTTTGCAGGGCTACAATGGAAGA
GGCATTACAAGGATCTGAAGCAAATAGCAGAATCATTCCGCGTAGTCTAGGGTGGTTCCACTGGGTTCGTTCATCACGTA
ATCTG-TTTATTATTAGAGAAAATGAGGGATGCCGTTATGTAAAGGGAGGGTAAGTACACATCATTTGTAACGATGATTA
TTTAGCTGAAGAAATTGAACATTGTATGTAAGCTTCCTCTTCTAGTTACAGTAAGAATTCAGATCTAAAGGTGCCTTCGT
GAG-CGCATATAACAACTTCCAGGCCTAAACACATAAATGCACGTTTGAAGCTTCCTTGGCTATAGCCTACTACAGGTCA
AATCTATATGACTGGCAATGAACTGATAGGCTGATACATGTAGAGTTGTTTCACTACACTTGCCGGCCTC--------CA
TATAGGGTTCTTACATCTAGATCAGGGAAAGAATTATGCCCTTGCCTGACTCGTGTGAACGCGTCATGGAGTATAAGTGT
GATTTCAACTTTCAAGGCATCACTAGAGCTCCAGT----------------------------------------ATACG
TGACAGTATGTAGCTGCAAATAAGAACAGTTCAAAGTTCACTCAAATGGTTCTAAGATATGCTAA--------GGTTTGA
TGGAATAAAGCAATACAAATGGCTACAGAATGATAT------------------------GAGCAGCAACTACAACATAA
AAAAAAAATG------GTGTATGCATAACAACCTCATGGATAACCTAAAAGGAAAATCTCAATCAGAGTCATAGAAGGAC
CAGCATTATGCTAGAGTTGCTGAAAGCATTATCATTAAATCGATATTCACAGGCAAGCTAGAACAAATAAGTTAACTCTA
GGGTGGGAAGGGGCCTCCCCTCCCAATATCTTAAAAATTGCTCTAAAGTGGACAACTTTTTCTGTACTTAGGTCTTCATA
CTACACATACTTTTCATGTAGTTGTCAGAAGGTTGAAGAGACAAATA---------------------------------
---------------------AAGTTACCTCCAAACTAACAAGTC-AGTATAATGCTGCTAGAGGACAGTGGCATACCTT
AACACCATCATC
>SNPs
----------S--------------S----------------------------------S--------S----S-----
---------------------------------------------------------------S----------------
---------------S--SSSSSSSS----------------------S-----S------S------------------
------------------SS--S--------S----S-----------------S-------------------S-----
-----------------------------------S-----------S----S---------------------------
----------------------S-----------------S----------------------S----------------
--------------------S-----------------------------------------------S-S---------
--------------------------------S------------S----------------------------S-----
------------------------------S--------------------------------------S----------
-S---------------------S----------------------S-----S---S---------S-S----S------
-------------------------------------------------S------------------S-----------
--------------------------------------------------------------S-----------------
-------S-SSSS-S--SS-------------------------S-S----------SS-------S-------------
----------------------------------------------------------------------S---------
--------------S-----------------SS------------------------------S----S----------
--------------------------------------------------------------------------S-----
---------------S-----------------------------------S----------------------------
------------------S-------------------------SSSSSS------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------S-----------S-SS----------SS-SS--------S-S
------------SS--------S--S------------------------------------------------------
--------------------------------S-----------------------------------------S-----
------------S-SSS-SSSSSSS---------------------------S---------------------------
-S--------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S------------S-------------------------------------------------S----------
-----------------------------------------------------------------------------S--
--------S----S-----------------------------------------------------------------S
-S------------------------------------------------------------------------------
---S----------------------S--------------S-----S--------------------------------
-------------------------------------------------------S--------------SSSSSSSS--
--------------------------------------------------------------------------------
-----S-----------------------------SSSS-SSS-------------------------------------
----------------S-------------------------------------S------------------S------
---------------------S----------------------------------------------------------
-S-------SSSSSSS------S---------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------S--------------------------------------------S----------
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>forward_259
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-------------------------------------------------------------------------------A
TCGTCCTCTCCGACTCCTC-------------------------------------------------------------
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>reverse_1949
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----------------------------ACCGGAGAAGGTGATCAACG--------------------------------
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>forward_970
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----------------------------------------------------------------------ACCAGAAGCA
GCAGCAGTAC----------------------------------------------------------------------
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>reverse_2484
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---GCGCATATAACAACTTCCAGGC-------------------------------------------------------
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------------
