>input_sequence_57147
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--------------------------------------------------------ATGGACGGCAAGGGCTACACCACA
CCGCCCACCGCCCCCGCGGCGCAGGCCGAGGCCGGGGCGCCGCCGCACTCCTACCCCCCGACGCAGC---------ACGG
CAACGACGCCGCGGCGCCACAGCCGGGATCGCAGGTTTCCTATCCCTCGATGGAACACGCCATGGACGGTCTGGACGCCA
CCGCGCCACAGCCGGGCGCGCCGCCGCACCCGTCCTCCCCCCTGACGCAGCAGGCCATGGAGATGGAGGGCAAGTACGCC
GCCCCGCAGCCGGGCACGGGAGCGCCGCCGCCATCGTCCTCCCCACTGGCGCAGCAATCCATGGACGGCAAGGACGCCGC
CCCGGCACCGCCCGCGGA------------CGCCGAGTCGGCGAAATGGGGCACGCGGCAGATGGGCCCGCCGGCGGCCC
CGGGGGCGCACCCGGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGACCAGGAGCTGCCGCCGTACGTCATC
ATGGGGGGGCCGGAGCCGGCGCCGGCGGCATCCACGCGGCGGACGGACAAGGAGACCAAGGACAGCCCCATGGAGCACAT
CCTCGACTTCTTCAACGTATGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATCTGGCTCAACCGTAAGCACAAACCCA
TCCAACAAATCCAACCT------------TCATCAAGATGATACTCCGCTTCTGCTCTGCTCAC----ACCGTTTTCTTC
TTTGTTCTTGCAGTCAAGACGGCGCCGTCCATGTCGGACGCGGCCATGGGGAAGCTGAGCCTGGGCGCCAAGGCGATCAC
GGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTGAAGAAGACGTTCGCCTGCT
ACCTGTCCACGGCCACGGGGCCCGTCGCCGGCACGCTCTACCTCACCAACCTGAACGTCGCCTTCTGCAGCGACCGCCCG
CTCTCATTCACCGCGCCGTCGGGCCAGACCGCATGGAGCTACTACAAGATCGTGATCCCGCTGGCCAAGCTCGCAGCCGT
CGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTGGACTCGCACGACTTCTGGTTCA
TGGGCTTCGTCAGCTACGACAAGGCCGTGCGCCACCTGGGCGGGGCCGTCTCGTCGTCGCAGCACCACGGCGCCGCTCCC
ACCGCGGCGCCGGCGCCGGC------ACCCACCTACGAGTGA--------------------------------------
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>chr5B_1_TraesCS5B01G502200
GCGCGCACACGTATGCTATTTTTTTTTGCCACGAGCTCCTCAGATGTCATTTCAACACGAAAATTTGCACACGCCTTGCG
CACCTGAGAATCTTTGATGGCAAAAAATTCAGATTTTTTTGCTATTCTTTTGAATTTACTGTTCATCACCGAGTACATGT
AGTTTTTTTTTTTTTTGCCGCGAGCTCTTCAAACATCCAAACATGACAAAAATTGGCACGCACCTTACGGACCTAAGTAT
CTTCGACGTAAAAGAAATTCAGATTTTTTTGTTTGTTTTTGCTAAAAATCTTCACTTCTACTGTTCATCCATGCACTATT
CACCCCATGGGCCAAACAGGATTGATTTAGCGGCGAAATCCCGCAGGATAAAAAAGTGGCTGGTTGTGAGAGTTTGTGAT
GCAATCTATACGGTTTTAGAGTTGAGGAACTAAAAGAGAGCAAACCGAAGAATTGAGGGACAAAAAATGAACTTTTCTCC
TTTCTTAATGAGGGGAAGACAAAATAAATTTGAAAAGGTACTGTACATTTTTTTTAAATAGGAAATCGAGAAGTTGATGG
TCCAAGCCAACTCAGCAACGAGATGATGTCAGAGCACACCTGTCGTGCGTCGCCCGATCCAAGGTGTTTTGACTGTTCCA
AGAGAATTTTCCTTTTCGCTGCGAAGAAGCGGCGCGAGGACACGTCGTCGCCGCGGCTAAGCCTCCGCTCTCCACGTACT
CCCTCCTCCCGAAGGCTACCGCCTACCCTACCATGCCAAAGCTGGAAGGTCCTTGCTCATGAAGCAGACGACACGCAGCT
TCGTGGCGCCCCTCGTCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAAACACAGTCCCTCCCTTATCCACCT--
-CAACATCAAAATCAATCGTCTCACACTTGCGGTTCCAAATCAACCACCGCCACCATCACCTTCCTGCT----------C
CCCGAGCCCACGCCCCCCCTGCCCCGCAGCACCAGCACCACCAGCTAGC---AGCCATGGACGGCAAGGGCTACACCACA
CCGCCCACCGCCCCCGCGGCGCAGGCCGAGGCCGGGGCGCCGCCGCACTCCTACCCCCCGACGCAGC---------ACGG
CAACGACGCCGCGGCGCCACAGCCGGGATCGCAGGTTTCCTATCCCTCGATGGAACACGCCATGGACGGTCTGGACGCCA
CCGCGCCACAGCCGGGCGCGCCGCCGCACCCGTCCTCCCCCCTGACGCAGCAGGCCATGGAGATGGAGGGCAAGTACGCC
GCCCCGCAGCCGGGCACGGGAGCGCCGCCGCCATCGTCCTCCCCACTGGCGCAGCAATCCATGGACGGCAAGGACGCCGC
CCCGGCACCGCCCGCGGA------------CGCCGAGTCGGCGAAATGGGGCACGCGGCAGATGGGCCCGCCGGCGGCCC
CGGGGGCGCACCCGGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGACCAGGAGCTGCCGCCGTACGTCATC
ATGGGGGGGCCGGAGCCGGCGCCGGCGGCATCCACGCGGCGGACGGACAAGGAGACCAAGGACAGCCCCATGGAGCACAT
CCTCGACTTCTTCAACGTATGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATCTGGCTCAACCGTAAGCACAAACCCA
TCCAACAAATCCAACCT------------TCATCAAGATGATACTCCGCTTCTGCTCTGCTCAC----ACCGTTTTCTTC
TTTGTTCTTGCAGTCAAGACGGCGCCGTCCATGTCGGACGCGGCCATGGGGAAGCTGAGCCTGGGCGCCAAGGCGATCAC
GGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTGAAGAAGACGTTCGCCTGCT
ACCTGTCCACGGCCACGGGGCCCGTCGCCGGCACGCTCTACCTCACCAACCTGAACGTCGCCTTCTGCAGCGACCGCCCG
CTCTCATTCACCGCGCCGTCGGGCCAGACCGCATGGAGCTACTACAAGATCGTGATCCCGCTGGCCAAGCTCGCAGCCGT
CGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTGGACTCGCACGACTTCTGGTTCA
TGGGCTTCGTCAGCTACGACAAGGCCGTGCGCCACCTGGGCGGGGCCGTCTCGTCGTCGCAGCACCACGGCGCCGCTCCC
ACCGCGGCGCCGGCGCCGGC------ACCCACCTACGAGTGATTGGCTGATTGCCGTCGTGTCCCTGCCCGC-GGCTCTC
TGCTTTTCATTGCCGTGTGTGTGC--TCTGTTTTTCGGGCGGATCTGTTTAGTGAGTGCTCTCGTGTGTAGTGGATTTCC
GTGTGGTTATGTACTGTTGTCTATACGCTTTTGTCGAAATTTAACGTTATCTTCTTGATTCCTTTAAAAAATATTGTCCT
CCACCTCTTGCCCGATGTATATTTGTGTTCTTCGGAGTTGGACAATGTATTTGAAATTTGAGCATGTTTGCTAGTTATCC
ATTCTATGTTGTCAGGTTTCTAGCATGTCACCTC-------TAATCCACAGT------TACTTATGGCTTGCCGATCTAT
CTCCTGGGGGCTTGAGAACCATTGAGGGGGAATCAGAAAACGCTTTGAGAGAGGGATAAGGCGATTGACCGCTAACCCTA
GCCACCCTCCGCCGTCTCCCCCTCCCGGTGCCGACGGAGGTGGCCTCGGGAAGTCTTGGAGCCGGAGGTCTGTTGTGGTA
GGCGGAACGTCAGGTCCACGGGAAAGACAGCGCGATGCAACTGGCATCAGCGTCTTTTGTTAGCGGCGTCAGGTGGTGCT
CGATGGCGGCGTCCGAAGGAATCCAACACGACGATCTTCAACGGCGGCCCGACATGGCTAGGCCACCAGAGAAGATGGCG
TTGATGCA---------------TCGGCCTCAGATTTGGACATGGCGTGTAGAGGCATGGGTACGTCAGATTCAGACATA
GCGTGTAGAGGCACGGGCAATTTGTCTCAAATTTTCCTTTAAGGAGTCTTGGGGTTCGGTTTGGGACTGTGTGGCTACGA
CGCTGTCCTGGTGTAGGAATAATGCCTTCATCACACTATTCCTATCTTATTGCTGAACTTTTCATTGGCGGAGGGTGTGT
GGAAATGTGTCTCCGACAAGTCTTTTGGGATTAGTCGGTTTAGATTTTCAGTGGATCCGCCTAAGTTCGACCGGCTCTCA
TGGTCTTCCGAGTGGCCTTTGTTAACGTTCCGA
>chr5A_671
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------------------------------GGCTCGAGGCCACGTTGTCGCCGCGGCTAAGCGTCCGACCTCCACGTATT
CCCGCTTCCCGAAGGCTTCGGC-----CTACCATGCCCAAGCTGGAAGGTCCTTGCTCATGAAGCAGACG-----CAGCT
TCGTGGCGCCTC---TCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAAACCCACACCCTCCCTTATCCACCT--
-CAACATCAAAATCAATCGTCTCGCACTTTCGGTACCAAAC-----CCAAC------CACCTCCATCATCTCCCTGCACC
CCCGAGCCCACGCTTCCCCTGTCCCGCAGCACCAGTACCAGCACCACCGGCTAGCCATGGACGACAAGGACTACGCCACA
CCGCCCACCGCTCCCGCGCCACAGGCCGAGGCCGGGGCGCCGCAGCACTCCTACCCCCCGACGCACCACGCCATGGACGG
CAAGGACGCCACCGCGCCGCAGCCGGGACCGCAGGTCTCCTATCCCTTGATGGAACACGCCATCGACGGTCTGGACGCCA
CCGCGCCACAGCCGGGAGCGCCGCCGCATCCGTCTTCCCCCCTGACGCAGCAGGCCATGGAGATGGAGGGCAAGTACGCC
GCCCCGCAGCCGGGCACGGGAGCGACGCCGCCCTCGTCCTCCCCCCTCATGCAGCAAGCCGTCGACGGCAAGGACGCCGC
CCAGGCACCGCCCGGCGCGTCAGTGCCGCCCGCCGAGTCGGCGAGGTGGGGCACGCGGCAGATGGGCCCGCCGGCGGCGC
CGGGGGCGCACCCCGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGATCAGGAGCTGCCGCCGTACGTCATC
ATGGGGGGACCGGAGCCGGCGGCGGCGGCGTCGGCGCGGCGGACGGACAAGGAGACCAAGGACAGCCCCATGGAGCACAT
CCTCGACTTCTTCAACGTCTGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATCTGGCTCAACCGTAAGCACAAACCCA
TCC---------AACCT------------TCATCACGATGATACTTTGCTTCTGCTCTGCTCACACCGACCGTTTTCTTC
TTTGTTC---CAGTCAAGACTGCGCCGTCCATGTCCGACGCGGCGATGGGGAAGCTGAGCCTGGGCGCCAAGGCCATCAC
GGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTAAAGAAGACGTTCGCCTGCT
ACCTGTCCACGGCCACGGGCCCCGTCGCCGGCACGCTCTACCTCACCAACATGAACGTCGCCTTCTGCAGCGACCGCCCG
CTCTCCTTCACCGCGCCGTCGGGCCAGACCGCCTGGAGCTACTACAAGATCATGATCCCGCTGGCCAAGCTCGCCGCCGT
CGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTCGACTCGCACGACTTCTGGTTCA
TGGGCTTCGTCAGCTACGACAAGGCCGTGCACCACCTGGGCGGGGCCGTCTCCTCGTCGCAGCACCACGGCGCCGCTCCC
GCCGCGGCGCCGGCGCCGGC------ACCCACCTACGAGTGATTGGCTGATTGCCGCCGTGTTCCATGTTCGTGGCTCTC
TGCTTTTCATTGCCGTGTGTGTGCGCTCTGTTTTTCGGGCGGATCTGTTTAGTGAGTGCTCTGGTGTGTAGTGGATTTTC
GTGTGGTTATGTGCTGTTGTCTATACGC----------------------------------------------------
----------------------TTGTGTTCTTCGGAGTTGGACAATGTATTTGAAATTTGAGCATGTTTGCTAGTTATCC
ATTCTATGCTGTCAGGTTTCTAACATGACACGTGTGATTGATAATCCAAAGT------TACTTATGGCTTGCC-------
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>chr5D_676
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-----------------------------------GAGGCCACGTTGTCGCCGCGGCTAAGCCTCCGTCCTCCACGTATT
CCCGCTTCCCGAAGGCTTCGGC-----CTACCATGCCAGAGCTGGAACGTCCTTGCTCATGAAGCAGACGACACGCAGCT
TCGTGGCGCCCC---TCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAGAACCTGCCCCGCCTCTGTCCACCTCA
ACACCATCAGAGTCAATCGTCTCACACTTTCGGTTCCAAACCAAATCCAAC------CACCTCCCTGCT----------C
CCCGTGCCCACGCTTCCCCTGCCCCGCA-CACCAGCACCACCAGCTAGC---AGCCATGGACGGCAAGGGCTACACCACA
CCGCCCACCGCCCCCGCGCCACAGGCCGAGGCCGGGGCGCCGCCGCACTCCTACCCCCCGACAGAGCACGCCATGGACGG
CAAGGACGCGGCCGCGCCACAGCCGGGATCGCAGGTCTCCTATCCCTCCATGGAACACGCCATGGACGGCCTGGACGCCA
CCGCGCCACAGCCGAGAGCGCCGCCGCACCCGTCCTCCCCCCAGACGCAGCAGGCCATGGAGATGGAGGGCAAGTACGCC
GCCCCACAGCCGGGCACGGGAGCGACGCCGCCCTCGTCCTCCCCCCTTACGCAGCAATCCGTGGACGGCAAGGACGCCGC
CCCGGCACCGCCCGCGGA------------CGCCGAGTCGGCGAAATGGGGCACGCGGCAGATGGGCCCGCCGGCGGCCC
CGGGGGCGCACCCCGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGACCAGGAGCTGCCGCCGTACGTCATC
ATGGGGGGGCCTGAGCAGGCGCCGGCGGCGTCGGCCCGGCGGACGGACACGGAGACCAAGGACAGCCCCATGGAGCACAT
CCTCGACTTCTTCAACGTCTGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATCTGGCTCAACCGTAAGCACAAACCAA
TCC---------AACCTCCCTCACGTTCTTCATCACGATGACACTCTGCTTCTGCTCTGCTCACACCGACCGTTTTCCTA
ATTGTTCTTGCAGTCAAGACGGCGCCGTCCATGTCGGACGCGGCGATGGGGAAGCTGAGCCTGGGCGCCAAGGCCATCAC
GGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTGAAGAAGACCTTCGCCTGCT
ACCTGTCCACGGCCACGGGGCCCGTCGCCGGCACGCTATACCTCACCAACATGAACGTCGCCTTCTGCAGCGACCGCCCG
CTCTCCTTCACCGCGCCGTCGGGCCAGACCGCCTGGAGCTACTACAAGATCATGATCCCGCTGGCCAAGCTCGCCGCCGT
CGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTCGACTCGCACGACTTCTGGTTCA
TGGGCTTCGTCAGCTACGACAAGGCCGTGCGCCACCTGGGCGGGGCAGTCTCGTCGTCGCAGCACCACGGCGCCGCTCCC
GCCGCGGCGCCGGCGCCGGCACCAACACCCACCTACGAGTGATTGGCTGACTGCCGTCGCGTCAGTATCCGC-GGCTCTG
CT-TTTTTATCGCCGTGTGTGTGC--TCTGTTTTTCGGGCGGATCTGTTTAGTGAGTGCTCTCGTGTGTAGTGGATTTTC
GTGTGGTTATGTACTGTTGTCTATACGCTTTTGTCGAAATTTAGCGTCATCTTCTTAATTCCGTTCAAAAATATTGTTCT
CCACCTCTTGCCCGATGTATATTTGTGTTCTTCGGAGTTGGACAATGTATTTGAAATTTGAGAATGTTTGCTAGTTACCC
ATTCTATGCTGTCAGGTTTCTAACATGACACCTG-------TGATTGATAATCCACAGTACTTATGACTTGCCGATCTAT
CTCAT--GGGCTTGAAAACTATCGAGGGGGGATCACAAAACGCACCCACAAGGGTGGTGGGTATGTCTCTTTACGTGTGC
TCGGTGTTGGTGACGCCG--------------------------------------------------------------
----------------------------------------------------------------GGCGTCAGGTGGTGCT
CGCTGGCGGCAGCCGAAGGAATCCAACACGACGATCTTCAACGGCGGCCCAACCTGGCTAGGCAACCAGAGAAGTTGGTG
CATCGGCCTGGATGGTGATGAGTTCGACCTCAGATTTGGACATGGCGTGTAGAGGCATGAGTACGTCAGATTCAGACATA
GCGTGTAGAGGCATGGGCTATTTGTCTCGAATTTTCTTTTAAGGAGCCTTCGGGTTCGGTTTGGGACTGTGTGGCTACGA
CGCTGTCCTGATGTAGAATAATGCT-TTCCTCACATTATTCCTATTTTATTGCTGAACTTTTCATTGCTGGAGGGTGTGT
GGAAATGTGTCTCCGACAAGTCTTTTGGGATTAATCGGTTTAGACTTTCAGTGGATCCGCCTAAGTTCGACCGGCTCTCA
TGGTCTTTCGAGTGGCCTTTGTTAACGTTCCGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----S-----S---------------------SS---------S-
---S-S-----------S-S--SSSSS-----------------------------------------------------
------------SSS-----------------------------------------S---S-------------------
-----------------------------S----------S---SSS-SS-SSSSSS-----S-----------------
-------------SS-----------------------------------------------------------------
------------------S-S-----------------------------------------------------------
---S--------S-----------------------S-------------------------------------------
----------------S---------------------------------------------------------------
------------------------S-------S-----------S--SS-----------S-------------------
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-------------S------------------------------------------------------------------
-----------------------------S--SS----------------------------------------------
------------------S-------------------------------------------------------------
---SSSSSSSSS-----------------------S----------S---------------------------------
--------------------------------------------S-----------------------------S-----
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--------------------------------------------------S-----------------------------
-----S--------------------------S------------------S----------------------S-----
---------------------------------------------------------S----------------------
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S-----------------------------------------------------------------SS------------
------------------------------------------------------------------------------S-
-------------------------------------------S---S--------S-----S--S-----------S--
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--------S-------------S----S-----S--------------S-------------------------------
---S-SS--------S---S--S-------S----S-------SSSS-S-SS--SSSSS--SSSS-SS-SSSSSSSSSSS
S-SSSSS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--S-------SS--------------------------------------S--S---------S----------S---S-
SSSSS--S------------------S--------------------------------S--------------------
-------------S----S---------S-------S---------S---S-----------------------------
----------S-----S-SS-SSSSS---S-----S---------S---------------------SS-----------
---------------------------------S----------S-----------------------------------
-------S-------------------------
>forward_605
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-------------------------ATGTCAGAGCACACCTGTCG-----------------------------------
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>reverse_2646
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-----GGGGGCTTGAGAACCATTGA-------------------------------------------------------
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